Whole-Slide Image Analysis

Overview

Whole-slide image analysis studies how to extract clinically useful information from gigapixel tissue scans, where relevant cells and tissue patterns may be sparse and spread across multiple scales. Common approaches divide slides into patches and use multiple-instance learning with slide-level labels, while newer methods add spatial graphs, multiscale models, pathology foundation models, or vision-language systems. These methods support tasks such as cancer classification, grading, lesion and cell localization, survival prediction, molecular profiling, and report generation. A central challenge is balancing accuracy and clinically grounded evidence with computational cost and reliable generalization across hospitals, scanners, and patient cohorts.

Latest papers

CardsList

214 papers35 papers in the last four weeks, up 75% on the four weeks before. 0.2% of all new papers.

  1. PathKGen: Pathology Knowledge Assisted MLLM for Explainable Histopathology

    Oct 24, 2026Nadun Rajapaksha, Sandun Herath, Devnith Wijesinghe +3Medical Report GenerationWhole-Slide Image Analysis

  2. AutoMIL: Automated Multiple Instance Learning for Whole-Slide Image Classification

    Oct 23, 2026Jonas Waibel, Frank Kramer, Dominik MüllerHistopathology Image ClassificationWhole-Slide Image Analysis

  3. Benchmarking Data-Free Continual Model Merging for Whole-Slide Image Survival Analysis

    Oct 23, 2026Vu Minh Tran, Doanh C. Bui, Maï K. Nguyen +1Survival AnalysisCancer Survival Prediction

  4. Attention-guided classification and tumor localization of combined hepatocellular-cholangiocarcinoma

    Oct 22, 2026Xiaowen Liang, Hélène Cazier, Aurélie Beaufrère +3Cancer Subtype ClassificationHistopathology Image Classification

  5. LEAF-Mamba: Feature Adaptation and Fusion for Whole Slide Image Analysis

    Oct 21, 2026Lubin Gan, Jing Zhang, Mingjun Ma +3Whole-Slide Image AnalysisFeature Fusion

  6. Look Beyond the Question: Preserve-Focus-Fuse for Whole-Slide Image Question Answering

    Oct 21, 2026Xiangyu Li, Jincheng Li, Tianle Du +6Visual Question AnsweringPathology VQA

  7. Scaling Vision Foundation Models for Toxicologic Pathology

    Oct 19, 2026Jessica Loo, Theodoros Pissas, Byunghak Kang +7Pathology Foundation ModelsComputational Pathology

  8. HGASurv: Hierarchical Granularity-Aware Multimodal Integration for Survival Prediction

    Oct 19, 2026Peike Yu, Wuchao Liu, Jihong Guan +1Multimodal Survival AnalysisCancer Survival Prediction

  9. SAR2Net: Learning Spatially Anchored Representations for Retrieval-Guided Cross-Stain Alignment

    Oct 19, 2026Tianle Shen, Fang Yan, Xiaofan ZhangMedical Image RegistrationWhole-Slide Image Analysis

  10. PRET is a few-shot system for pan-cancer recognition without example training

    Oct 18, 2026Yi Li, Ziyu Ning, Tianqi Xiang +17Computational PathologyHistopathology Image Classification

  11. Benchmarking and Improvement of Artifact Segmentation Methods in H&E-Stained Whole Slide Imaging

    Oct 16, 2026Julia Merta, Daniel Mendelsohn, Benedikt Schoser +2Histopathology Image SegmentationComputational Pathology

  12. ProtoGTX: Prototype-Aligned Graph Transformer for Explainable Whole-Slide Image Analysis

    Oct 16, 2026Iori Azuma, Hiroyuki Kusuhara, Tadahaya MizunoExplainable Medical Image AnalysisWhole-Slide Image Analysis

  13. Beyond the Dominant Label: Recovering Coexisting Lesion Evidence with Multiple Instance Learning

    Oct 15, 2026Lubin Gan, Jing Zhang, Xinming Zhang +3Multiple Instance LearningWhole-Slide Image Analysis

  14. Pathology foundation models for training-free case retrieval in salivary gland tumors

    Oct 15, 2026Maximilian J. Roesel, Niklas Kiermeyer, Philipp Keyl +1Computational PathologyMedical Image Retrieval

  15. PlanPath: Exploration-Guided Orchestration for Patient-Level Pathology Reasoning

    Oct 13, 2026Jiusong Ge, Mingzhao He, Qidong Liu +8Pathology VQAMedical VQA

  16. Morphology-aware deep learning predicts colorectal cancer survival from whole-slide images

    Oct 13, 2026Hikmat Khan, Metin N. Gurcan, Anil Parwani +3Cancer Survival PredictionComputational Pathology

  17. Beyond Sparse Captions: Aligning Slide-Level Text and Patch-Level Vision in Pathology

    Oct 12, 2026Daniel Shao, Dongmin Bang, Luca L. Weishaupt +6Computational PathologyMedical VLMs

  18. PathPilot: An Adaptive Question-Conditioned Multi-Magnification Navigation Agent for Whole-Slide Image Analysis

    Oct 12, 2026Zhengyang Xu, Han Li, Jingsong Liu +5Whole-Slide Image AnalysisComputational Pathology

  19. ProtoPur: Prototype-Purity Pseudo-Labeling for Weakly Supervised Instance Learning in Pathology

    Oct 11, 2026Chen Shu, Chengyang Zhang, Boyu Fu +5Weakly Supervised LearningComputational Pathology

  20. Masked Feature Encoding for Large-Scale Whole Slide Image Representation

    Oct 7, 2026Haoyu He, Basile Tessier-Cloutier, Yang Wang +1Whole-Slide Image AnalysisMedical Image Representation Learning

  21. CHARTER: Auditing Reference Substitution in Hierarchical Compact-Evidence Evaluation for Computational Pathology

    Oct 6, 2026Hyun Do Jung, Jungwon Choi, Soojung Choi +2Computational PathologyAlgorithmic Auditing

  22. Anchor-driven Multi-modal Multi-scale Expert Selection for Survival Prediction

    Oct 6, 2026Tao Zhou, Ying Hu, Huazhu Fu +3Cancer Survival PredictionMixture of Experts

  23. Cross-Modal Contrastive Learning for the Retrieval of Immunotherapy-Associated Molecular Signatures from Histopathology

    Oct 4, 2026Sigrid Vila-Bagaria, Mar Teixidó, Miquel Piñol +3Computational PathologyCross-Modal Retrieval

  24. One Tile, Multiple Instances: Rethinking MIL for Sparse Diagnostic Evidence

    Oct 4, 2026Runsheng Liu, Cheng Jin, Hao Jiang +1Multiple Instance LearningWhole-Slide Image Analysis

  25. AI-assisted mitotic counting improves reproducibility and efficiency across multiple tumour types

    Oct 1, 2026Simon Graham, Mostafa Jahanifar, Quoc Dang Vu +15Computational PathologyHuman-AI Collaboration

  26. Nonparametric Distribution Matching for Self-Supervised Whole-Slide Image Condensation

    Sep 30, 2026Duong M. Nguyen, Trong Nghia Hoang, Hang Thi Nguyen +3Computational PathologyDistribution Matching

  27. The Effect of Tissue Detection on False Positives of Diffusion-Based Artifact Detection in Histopathology

    Sep 30, 2026Konstantinos Moutselos, Ilias MaglogiannisComputational PathologyDiffusion-Based OOD Detection

  28. GATE-ST: Gene-Aware Text-image Encoder for Spatial Transcriptomics

    Sep 30, 2026Lucas Ni, Jian Luo, Wentao Huang +1Spatial TranscriptomicsMultimodal Embedding

  29. Towards Scalable Context-Aware Single-Cell Spatial Transcriptomics Prediction from Histology Images

    Sep 29, 2026Zijun Gao, Chunbin Gu, Jinxi Xiang +2Spatial TranscriptomicsSpatial Attention