NeuDiff Agent: A Governed AI Workflow for Single-Crystal Neutron Crystallography

Automation underpins progress across scientific and industrial disciplines. Yet, automating tasks requiring interpretation of abstract visual information remain challenging. For example, crystal alignment strongly relies on humans with the ability to comprehend diffraction patterns. Here we introduce an autonomous system that aligns single crystals without access to crystallography and diffraction theory. Using a model-free reinforcement learning framework, an agent learns to identify and navigate towards high-symmetry orientations directly from Laue diffraction patterns. Despite the absence of human supervision, the agent develops human-like strategies to achieve time-efficient alignment across different crystal symmetry classes. With this, we provide a computational framework for intelligent diffractometers. As such, our approach advances the development of automated experimental workflows in materials science.

As scientific workflows shift from deterministic executables to LLM-based agents, the development practices on offer, such as fine-tuning, reinforcement learning, and prompt-and-go, bury the scientist's judgment. We propose treating agent construction as a workflow stage and introduce AgentBuild, which builds a scientific agent from a contract the scientist authors. The contract is a version-controlled rubric, a difficulty-graded curriculum, and a curated external knowledge base. A rubric-driven judge gates a meta-optimizer coding agent that edits the agent within a declared boundary, so the build compiles the agent, not the scientist's judgment. We instantiate this for Rietveld refinement of X-ray diffraction data through GSAS-II behind MCP and A2A, where a blank-harness construction run progresses through a lithium lanthanum zirconium oxide (LLZO) signal-to-noise ladder, reaches the 4 hour scan as a frontier case, and exposes the workflow-scope limits that remain. The same rubric that rewards credible fits also scores trajectory scope, making the frontier a contract failure rather than a pattern-fitting failure. As base models evolve, re-running AgentBuild is a re-tune, not a rebuild, and the scientist's authored contract remains the durable asset.

Crystal plasticity (CP) simulations predict the mechanical behavior of polycrystalline metals, yet their routine use is hindered by the manual effort of configuring heterogeneous tools, orchestrating multi-step data pipelines, and calibrating constitutive parameters against experiments. These bottlenecks impede productivity in systematic parameter studies, motivating interest in automated workflows. This study presents CP-Agent, a harness-engineered LLM-based agent that autonomously executes complete CP modeling workflows from natural-language tasks. Operating under the ReAct paradigm, the agent reasons about tool selection and sequencing while delegating numerical search to established optimizers. The harness comprises a minimal system prompt, typed tool definitions, a dispatcher, and a safety-bounded iteration loop, encoding domain knowledge through tool schemas rather than hard-coded logic. CP-Agent is demonstrated on four case studies: calibrating four slip parameters of additively manufactured stainless steel 316L against tensile data; validating the workflow against published copper benchmarks, reproducing stress-strain and texture evolution; recovering the initial crystallographic texture of copper, where the agent correctly identifies a diffuse initial texture; and reproducing the multi-pass rolling texture evolution of a Mg-Zn-Ca alloy, where the agent chains five deformation passes and recovers the experimentally observed weakened, split basal texture. In all cases, the agent inferred the correct execution sequence from the task statement, robustly across repeated runs, and delivered physically interpretable results. This work establishes harness engineering as a systematic approach to automating CP modeling workflows while maintaining physical interpretability and auditability through visible reasoning traces.