Empirical Evaluation of No Free Lunch Violations in Permutation-Based Optimization

Permutation optimization arises whenever the components of a system are fixed but their ordering affects performance. We introduce PRISM, a predictive protocol for permutation optimization that measures a fitness landscape before selecting a search strategy. PRISM uses inexpensive landscape diagnostics, including one-step move autocorrelation and fitness-distance correlation, to predict useful mutation operators, identify when structured search is likely to outperform random sampling, and detect regimes in which search provides little advantage. Across synthetic permutation landscapes, neural architecture benchmarks, scientific machine learning pipelines, and large-language-model instruction ordering, the protocol makes testable predictions about search behavior before optimization begins. Exhaustive instruction-ordering experiments reveal substantial performance variation induced solely by permutation, while cross-model experiments show that useful ordering structure can transfer across model families and task difficulty. Additional experiments demonstrate that instruction ordering remains consequential after prompt wording is optimized, indicating that content optimization and ordering optimization are complementary. The results position PRISM not as a universally superior optimizer, but as a framework for determining when permutation search is useful, which representation and operator should be used, and when simpler alternatives are preferable.

Noisy evolution strategies under fixed evaluation budgets face a depth-fidelity trade-off: spending evaluations to denoise intra-generation rankings reduces the number of distribution updates the optimizer can execute. We argue for depth over fidelity and propose probabilistic elite membership (PEM), which replaces hard rank-based weights in evolution strategies with conditional expected rank weights that integrate over ranking uncertainty. PEM preserves the conditional mean update while reducing conditional update dispersion, a Rao-Blackwellization of the noisy rank-based step. We instantiate PEM via residual bootstrapping (RB-PEM) with capped per-generation overhead, complemented by an adaptive probe-and-switch mechanism for low-noise regimes. Across the COCO bbob-noisy suite and external tasks including RL policy search and hyperparameter optimization, RB-PEM achieves consistent gains in high-misranking, budget-constrained settings.

Neural combinatorial optimization (NCO) solvers report the best of many sampled solutions per instance, and the sample count is, by convention, identical for every instance. Whether a non-uniform allocation of a fixed total budget would buy anything has not been measured. We measure it, and we audit the measurement itself. First, on in-distribution workloads the allocation headroom is not detectable. Across three pretrained solvers (POMO, AM, SymNCO) on uniform TSP-100, an oracle allocation computed and evaluated on the same stored samples reports a 2.2-2.6% gain with intervals excluding zero; measured out of sample the same gain is indistinguishable from zero (0.457, 0.015, -0.512 percent). Following the customary in-sample procedure, all three solvers would have supported a published 2%-level gain that does not exist. We calibrate this bias against an instance-wise null in which the true gain is zero by construction; over the ranges we test it does not shrink with more samples or more instances. Second, the same correction that removes the phantom gains preserves a real one. Under distribution shift (a workload mixing uniform and clustered instances), a pre-registered confirmatory experiment finds that allocation guided by held-out sample statistics improves best-of-k by 11.5% (AM, primary endpoint; 95% CI [7.4, 19.7]) and 12.0% (SymNCO, replication) at equal evaluation budget, with the signal-acquisition cost not charged; a pre-registered negative control (POMO, an order of magnitude more robust to shift) shows -0.3% [-0.7, 0.24]. The gain exceeds a frozen distribution-label baseline by 4.2 points [1.9, 7.7]. An exploratory policy charging a 20-sample probe against the same budget retains 3.4% (AM) and 4.6% (SymNCO). We give a correction procedure and a reporting checklist, and release all data, code, and the pre-registration record.