No Image, No Problem: End-to-End Multi-Task Cardiac Analysis from Undersampled k-Space
Authors: Yundi Zhang, Sevgi Gokce Kafali, Niklas Bubeck, Daniel Rueckert, Jiazhen Pan
Organizations: Chair for AI in Healthcare and Medicine, Technical University of Munich (TUM) and TUM University Hospital, Munich, Germany · Department of Computing, Imperial College London, United Kingdom · Munich Center for Machine Learning, Technical University of Munich, Germany
Conventional clinical CMR pipelines rely on a sequential "reconstruct-then-analyze" paradigm, forcing an ill-posed intermediate step that introduces avoidable artifacts and information bottlenecks. This creates a fundamental mathematical paradox: it attempts to recover high-dimensional pixel arrays (i.e., images) from undersampled k-space, rather than directly extracting the low-dimensional physiological labels actually required for diagnosis. To unlock the direct diagnostic potential of k-space, we propose k-MTR (k-space Multi-Task Representation), a k-space representation learning framework that aligns undersampled k-space data and fully-sampled images into a shared semantic manifold. Leveraging a large-scale controlled simulation of 42,000 subjects, k-MTR forces the k-space encoder to restore anatomical information lost to undersampling directly within the latent space, bypassing the explicit inverse problem for downstream analysis. We demonstrate that this latent alignment enables the dense latent space embedded with high-level physiological semantics directly from undersampled frequencies. Across continuous phenotype regression, disease classification, and anatomical segmentation, k-MTR achieves highly competitive performance against state-of-the-art image-domain baselines. By showcasing that precise spatial geometries and multi-task features can be successfully recovered directly from the k-space representations, k-MTR provides a robust architectural blueprint for task-aware cardiac MRI workflows.
Figures & tables
Figure 1: Overview of the k-MTR framework. (a) S multi-view 2D+t slices are tokenized, concatenating image ( Qiu ) and k-space ( Qku ) tokens across slices for encoder input. (b–d) Training pipeline (single slice shown). (b) Unsupervised masked reconstruction of undersampled k-space and image slices. (c) Contrastive alignment between undersampled k-space ( Tku ) and fully-sampled image ( Ti ) embeddings. (d) Fine-tuning the pretrained k-space encoder via lightweight task-specific decoders.
Figure 2: 3D t-SNE visualization of the representations after alignment, colored by ground-truth phenotype groups.
Phenotype
Fully-sampled
Undersampled R=4
RN50
ViT
MAE
RN50 u
RN50 ku
MAE ku
k-MTR
LVEDV (mL)
6.58
11.53
9.03
7.35
9.57
12.88
8.15
LVSV (mL)
5.68
6.93
5.86
6.55
7.03
8.42
6.50
LVEF (%)
2.95
3.91
3.20
3.30
3.58
6.09
3.14
LVM (g)
5.51
7.85
5.87
7.01
8.00
10.09
7.20
RVEDV (mL)
9.24
13.75
9.49
10.49
11.33
14.76
10.60
Table 1: Mean absolute error ↓ for phenotype prediction. Image-based baselines are in gray . RN50: ResNet-50. Best are in dark green , second and third in lighter green .
Disease
Method
AUC-ROC ↑
F1 Score ↑
Recall ↑
Precision ↑
AP ↑
CAD (7.4%)
ViT
0.682
0.176
0.842
0.098
0.126
MAE
0.708
0.215
0.200
0.233
0.154
k-MTR (R=4)
0.737
0.282
0.500
0.197
0.234
High Blood Pressure (25.8%)
ViT
0.677
0.461
0.652
0.357
0.355
MAE
0.691
0.469
0.680
0.358
0.369
k-MTR (R=4)
0.697
0.474
0.781
0.340
0.386
Table 2: Disease classification performance. Fully-sampled image baselines are in gray ; k-MTR with undersampled k-space. Positive class ratios are shown as percentages of the cohort. AP: average precision. Best results are bold , second underlined .
Figure 3: Segmentation and Reconstruction Results. (a) Dice Score and example segmentation maps overlayed on fully-sampled images. k-MTR (R=8) is compared against the fully-sampled upper bound (nnU-Net) and undersampled (R=8) image-based baselines (nnU-Net u , LI-Net). (b) Image reconstructions from undersampled k-space compared to k-GIN.
Figure 4: Ablation of k-MTR’s phenotype prediction accuracy across varying undersampling factors, with 16x prediction failures highlighted in red.
Purpose: To assess whether breast lesion segmentation can be learned directly from acquired MRI k-space, and whether doing so improves robustness when data are accelerated or noisy. Materials and Methods: This retrospective study used public breast dynamic contrast-enhanced MRI (DCE-MRI) datasets with acquired and synthetic k-space, together with a within-dataset synthetic control. We compared four 3D U-Net variants: a hybrid k-space-to-image model, a native k-space model, and magnitude and complex image-space baselines. Models were evaluated under increasing undersampling and added complex Gaussian k-space noise. The primary outcome was patient-level Dice similarity coefficient under cross-validation, with the hybrid model prespecified as the main comparison against the magnitude image-space baseline. Results: At full sampling, the hybrid and image-space models performed similarly. As acceleration increased, the hybrid model retained substantially more segmentation accuracy and significantly outperformed the magnitude image-space baseline across moderate to high undersampling levels. The same pattern was observed when noise was added directly to k-space: the hybrid model degraded more slowly, whereas the image-space baseline failed under heavier noise. This advantage was reproduced in the within-dataset synthetic control. Feature analysis suggested that the k-space stage and image-space stage played complementary roles, with frequency-domain filtering concentrated before image-domain lesion localization. Conclusion: K-space-aware deep learning improves the robustness of breast lesion segmentation under MRI undersampling and k-space noise, while matching image-space methods at full sampling.
Lukas T. Rotkopf, Marco Schlimbach, Julius C. Holzschuh +3
Institute for AI in Medicine (IKIM), University Hospital Essen, Essen, Germany · Department of Physics, Technical University Dortmund, Dortmund, Germany · 3Division of Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany +4
Low-field magnetic resonance imaging (MRI) provides affordable access to diagnostic imaging but suffers from prolonged acquisition and limited image quality. Accelerated imaging can be achieved with k-space undersampling, while super-resolution (SR) and image quality transfer (IQT) methods typically rely on spatial-domain post-processing. In this work, we propose a novel framework for reconstructing high-field MR like images directly from undersampled low-field k-space. Our approach employs a k-space dual channel U-Net that processes the real and imaginary components of undersampled k-space to restore missing frequency content. Experiments on low-field brain MRI demonstrate that our k-space-driven image enhancement consistently outperforms the counterpart spatial-domain method. Furthermore, reconstructions from undersampled k-space achieve image quality comparable to full k-space acquisitions. To the best of our knowledge, this is the first work that investigates low-field MRI SR/IQT directly from undersampled k-space.
Daniel Tweneboah Anyimadu, Mohammed M. Abdelsamea, Ahmed Karam Eldaly
Department of Computer Science, University of Exeter, Exeter, United Kingdom · UCL Hawkes Institute, University College London, London, United Kingdom
Accelerated magnetic resonance imaging (MRI) aims to recover the k-space signal from acquired measurements, where accurate estimation of missing samples is essential for high-fidelity reconstruction. Existing k-space reconstruction methods estimate missing samples through interpolation operators or structure priors defined on discrete sampling grids. Although these formulations effectively exploit local interpolation relationships and global k-space redundancy, they reconstruct only discrete frequency coefficients and therefore do not explicitly model the underlying continuous signal. To overcome this limitation, we propose K-space Gaussian Representation (KGR), the first explicit continuous representation formulated directly in the native k-space domain. Rather than estimating unknown samples on discrete grids, KGR parameterizes the continuous signal using Gabor-Gaussian primitives with shared spatial geometry, yielding a compact representation that naturally preserves inter-coil correlations. Because unconstrained continuous fitting does not necessarily satisfy the intrinsic structural properties of multi-coil signal, the estimated representation is projected onto a low-rank manifold to enforce the algebraic constraints arising from smoothly varying phase and coil redundancy. A frequency-adaptive fitting strategy accommodates the heterogeneous characteristics of different k-space regions. Comprehensive validation across multiple datasets and sampling schemes shows consistent improvements over representative reconstruction baselines in both quantitative metrics and visual quality. These results suggest that explicit continuous parameterization of native k-space provides a principled framework for integrating continuous signal modeling with structured low-rank reconstruction.
Yu Guan, Mingyu Hu, Jiale Hu +3
School of Advanced Manufacturing and the School of Information Engineering, Nanchang University, Nanchang 330031, China · Key Laboratory of Biomedical Imaging Science and System, Chinese Academy of Sciences, Shenzhen 518055, China · School of Information Engineering, Nanchang University, Nanchang 330031, China +1