Single-Subject Multi-View MRI Super-Resolution via Implicit Neural Representations

Resolving complex fiber geometries in brain white matter requires high-resolution diffusion MRI at the cost of long acquisition times. This leads many clinical protocols to opt for low-resolution scans, making downstream microstructure estimation and tractography challenging. Implicit neural representations (INRs) can model the diffusion signal continuously, enabling native single-subject super-resolution by querying the network at arbitrary spatial coordinates, yet existing methods often suffer from long training times and lack a mechanism to incorporate anatomical priors to regularize super-resolution by constraining the space of plausible reconstructions. To address these limitations, we propose a novel transfer-learning framework that pre-trains an INR on a high-resolution template and then adapts it to subject-specific scans via registration and fine-tuning. For $4\times$ through-plane super-resolution from 5 mm to 1.25 mm on Human Connectome Project (HCP) data, our method reduces NRMSE by 36-49% and increases FSIM by 24-43% over a recent baseline with $6\times$ faster training, outperforming competing INR-based methods across both image quality and domain-specific metrics. Code is available on the project page at https://abdulkaderghandoura.github.io/research/msc-thesis/ .

High-resolution Magnetic Resonance Imaging (MRI) is vital for clinical diagnosis but limited by long acquisition times and motion artifacts. Super-resolution (SR) reconstructs low-resolution scans into high-resolution images, yet existing methods are mutually constrained: paired-data methods achieve efficiency only by relying on costly aligned datasets, while implicit neural representation approaches avoid such data needs at the expense of heavy computation. We propose a zero-shot MRI SR framework using explicit Gaussian representation to balance data requirements and efficiency. MRI-tailored Gaussian parameters embed tissue physical properties, reducing learnable parameters while preserving MR signal fidelity. A physics-grounded volume rendering strategy models MRI signal formation via normalized Gaussian aggregation. Additionally, a brick-based order-independent rasterization scheme enables highly parallel 3D computation, lowering training and inference costs. Experiments on two public MRI datasets show superior reconstruction quality and efficiency, demonstrating the method's potential for clinical MRI SR.

Multi-contrast super-resolution (MCSR) is crucial for enhancing MRI but current deep learning methods are limited. They typically require large, paired low- and high-resolution (LR/HR) training datasets, which are scarce, and are trained for fixed upsampling scales. While recent self-supervised methods remove the paired data requirement, they fail to leverage valuable population-level priors. In this work, we propose a novel, decoupled MCSR framework that resolves both limitations. We reformulate MCSR into two stages: (1) an unpaired cross-modal synthesis (uCMS) module, trained once on unpaired population data to learn a robust anatomical prior; and (2) a lightweight, patient-specific implicit re-representation (IrR) module. This IrR module is optimized in a self-supervised manner to fuse the population prior with the subject's own LR target data. This design uniquely fuses population-level knowledge with patient-specific fidelity without requiring paired target-domain LR/HR training data or paired cross-modal HR reference-target training data. Here, 'unpaired' refers to the population-level training setting; at subject-specific inference, as in standard MCSR, the method uses a matched HR reference image from another contrast together with the subject's LR target image. By building the IrR module on an implicit neural representation, our framework is also inherently scale-agnostic. Our method demonstrates superior quantitative performance on different datasets, with exceptional robustness at extreme scales (16x, 32x), a regime where competing methods fail. Our work presents a data-efficient, flexible, and computationally lightweight paradigm for MCSR, enabling high-fidelity, arbitrary-scale reconstruction without the need for paired population-level supervision.