Do We Need Bigger Models for Science? Task-Aware Retrieval with Small Language Models

Agentic science envisions many autonomous agents investigating concurrently while building on a shared, evolving body of scientific knowledge. This requires a knowledge foundation that supports high-concurrency access, preserves traceable and reusable reasoning, and grows incrementally. We propose the Large Knowledge Model (LKM), a growing, agent-native knowledge foundation that provides a general representation of scientific knowledge across disciplines. LKM organizes the scientific literature into reasoning graphs, with claims as the core nodes and associated reasoning chains that make explicit how premises and evidence support conclusions. These source-grounded objects are persistent and addressable; cross-paper links organize them into aligned question, workflow, and evidence views. Newly extracted papers extend the foundation incrementally while preserving existing object identities. Building on this foundation, we develop an agent-native, reasoning-aware scientific retrieval system that retrieves claims together with their reasoning chains and sources, enabling agents to inspect and reuse the evidence underlying scientific conclusions. Across benchmarks, agents using LKM retrieve more evidence, cite more faithfully, and answer scientific questions more accurately: LKM nearly doubles the known supporting and contradicting evidence retrieved on SciFact-Open (818 versus 443 claim-paper pairs), reasoning graphs raise citation F1 on ScholarQABench by more than 5 points over the same retrieved papers, and LKM retrieval improves a fixed answering model by 9.3, 4.2, and 14.7 points over no retrieval on ChemBench, PubMedQA, and SciBench. LKM lays the foundation for a scientific ecosystem in which AI scientists not only recall accumulated knowledge but also extend it, returning new questions, workflows, and evidence to a memory that every subsequent investigation can build on.

For emerging scientific research domains, local Small Language Models (SLMs) are becoming more attractive, as they offer stronger privacy control and more stable deployment pipelines than Large Language Models. However, in practice, scientific question-answering on SLMs often operates under inevitable constraints: small literature collections, fragmented evidence, limited context window and reasoning abilities. We propose the Evidence-Grounded Typed Knowledge Graph (EGT-KG), a retrieval framework to improve information retrieval with local SLMs. We assessed three question-answering settings: a vanilla Retrieval-Augmented Generation (RAG) workflow and two EGT-KG workflows: an automatically generated relation schema (AS) and an expert-defined relation schema (ES). Our experiments were evaluated with a six-dimensional evaluation framework (S3CRF: Soundness, Correctness, Completeness, Conciseness, Relevance, Fluency) on a Biopolymer-bound Soil Composite literature benchmark, showing that EGT-KG outperforms the vanilla RAG method in most settings, with the best improvement from llama3:8b: a Final Score of 70.37 (+14.67%) and 68.82 (+12.14%) by AS/ES EGT-KG variants.

Large language models (LLMs) have recently shown strong progress on scientific reasoning, yet two major bottlenecks remain. First, explicit retrieval fragments reasoning, imposing a hidden "tool tax" of extra tokens and steps. Second, multi-agent pipelines often dilute strong solutions by averaging across all candidates. We address these challenges with a unified framework that combines implicit retrieval and structured collaboration. At its foundation, a Monitor-based retrieval module operates at the token level, integrating external knowledge with minimal disruption to reasoning. On top of this substrate, Hierarchical Solution Refinement (HSR) iteratively designates each candidate as an anchor to be repaired by its peers, while Quality-Aware Iterative Reasoning (QAIR) adapts refinement to solution quality. On Humanity's Last Exam (HLE) Bio/Chem Gold, our framework achieves 48.3% accuracy - the highest reported to date, surpassing the strongest agent baseline by 13.4 points and leading frontier LLMs by up to 18.1 points, while simultaneously reducing token usage by 53.5% and agent steps by 43.7%. Results on SuperGPQA and TRQA confirm robustness across domains. Error analysis shows that reasoning failures and knowledge gaps co-occur in over 85% of cases, while diversity analysis reveals a clear dichotomy: retrieval tasks benefit from solution variety, whereas reasoning tasks favor consensus. Together, these findings demonstrate how implicit augmentation and structured refinement overcome the inefficiencies of explicit tool use and uniform aggregation. The code is available at https://github.com/tangxiangru/Eigen-1.