Invertible Logits Transformation for Accuracy-Preserving Post-Hoc Uncertainty Calibration

Reliable confidence estimates are essential in semantic segmentation, especially in safety-critical settings where overconfident errors can mislead downstream decisions. Yet modern segmentation models often remain miscalibrated. Post-hoc calibration offers a practical way to correct confidence estimates without retraining the segmentation model, but its use in dense prediction raises structural issues that are often overlooked. We study two such issues. First, adding a constant to all logits leaves the softmax probabilities unchanged, but several standard calibrators can still depend on this arbitrary offset. As a result, two logit representations encoding the same predictive distribution may yield different calibrated probabilities. We define translation-invariant (TI) calibrators as those whose outputs are unchanged under such shifts, characterize which common calibrators satisfy this property, and construct TI counterparts of shift-sensitive calibrators to isolate the effect of removing representation dependence. Second, post-hoc calibration is typically fitted by minimizing a likelihood-based objective, whereas segmentation models are trained with task-specific metrics such as Dice. This mismatch can cause calibration to alter class orderings and degrade the deployed segmentation map. We study decision-preserving calibration under argmax- and order-preservation constraints. Since enforcing these constraints collapses affine softmax calibrators to temperature scaling, we introduce class-conditional affine calibrators that can be made argmax- or order-preserving while retaining greater expressivity, allowing us to quantify the calibration-segmentation trade-off induced by decision preservation. Across natural-image and medical segmentation benchmarks, and under corruption-based covariate shift, matched comparisons show that TI variants generally improve calibration metrics, while decision-preserving variants prevent segmentation degradation and retain strong calibration performance. These results provide practical design principles for well-defined post-hoc calibration pipelines in semantic segmentation.

Reliable probability estimates are critical in many machine learning applications, yet modern classifiers are often poorly calibrated. Post-hoc calibration provides a simple and widely used solution, but the large number of proposed methods, combined with small-scale and inconsistent evaluations, makes it difficult to determine which approaches are truly effective in practice. We introduce a large-scale, standardized benchmark for post-hoc calibration, covering nearly 2000 experiments across tabular and computer vision tasks, including binary, multiclass, and large-scale classification settings. Our benchmark aggregates predictions from a diverse set of classical models, modern deep learning architectures, and foundation models, and provides unified, reproducible implementations of dozens of calibration methods within a common evaluation framework. We argue that Post-Hoc Improvement (PHI) in proper scoring rules offers a principled alternative to traditional calibration error estimators for comparing post-hoc methods, capturing both calibration quality and potential degradation to the model's predictive performance. Using this framework, we conduct the most comprehensive empirical study of post-hoc calibration to date. Our results reveal consistent patterns across domains: smooth calibration functions outperform binning-based approaches, dedicated multiclass methods are essential in high-dimensional settings, and generic machine learning models are not competitive without calibration-specific design. To facilitate future research, we release all data, code, and evaluation tools, providing a plug-and-play benchmark for developing and comparing calibration methods.

Deep neural networks often produce poorly calibrated confidence estimates, overstating their certainty even when predictions are incorrect. Temperature Scaling remains the most widely used posthoc calibration method due to its simplicity and effectiveness, yet its global, uniform rescaling of logits fails to correct the highly heterogeneous structure of miscalibration observed across the confidence spectrum. In particular, the largest correctness confidence discrepancies arise in different quantile regions depending on the setting, low confidence predictions, where uncertainty matters most, tend to exhibit the largest correctness confidence discrepancies, which standard TS leaves largely unaddressed. We introduce Quantile Adaptive Temperature Scaling (QaTS), a simple and efficient post hoc calibration method that adapts the temperature as a function of a predictions empirical confidence quantile. By mapping confidences into the quantile space, QaTS normalizes the calibration problem, makes the structure of miscalibration explicit and enables a monotone temperature function that adapts across quantiles while leaving well calibrated high confidence predictions largely unchanged. preserving high confidence behavior. This quantile aware formulation aligns naturally with a reparameterized Expected Calibration Error (ECE) objective and yields a sample wise temperature that is robust across a variety of challenging scenarios, such as class imbalance and distributional shifts. Across a broad range of datasets, architectures, evaluation scenarios and diverse tasks, QaTS consistently, and substantially, outperforms state of the art post hoc calibration methods, delivering more reliable and trustworthy confidence estimates without modifying model predictions.