Structure-aware Riemannian Growth Fields for 4D Plant Modeling
Authors: Meng-Yu Jennifer Kuo, Ryo Kawahara
Organizations: Nara Women’s University, Japan · Kyoto University, Japan
Abstract
In this paper, we introduce a novel framework for 4D plant growth modeling that reconstructs the continuous geometric and topological evolution of plants from sparse temporal observations. Existing methods mainly rely on dense registration, yet reliable dense sequences are hard to obtain due to scanning constraints and self-occlusions, leaving these approaches struggling under large temporal gaps where rapid organ emergence violates local rigidity. To overcome this, we bridge these gaps by formulating plant morphogenesis as a continuous procedural process on a structure-aware Riemannian growth field; this jointly models topology evolution and geometric deformation, preserving botanical hierarchies and stable spatio-temporal correspondences across distant timepoints. Our key idea is to ground symbolic growth rules within a continuous geodesic flow, where organ development follows biologically modulated trajectories that preserve structural coherence under topological changes. We further contribute a 10-day dual-species dataset with dense geometric and semantic annotations. Experiments demonstrate that our method accurately tracks individual organ growth over time and significantly outperforms state-of-the-art baselines in both geometric accuracy and correspondence consistency.
Quantifying plant growth dynamics from sparse longitudinal 3D observations is fundamental for agriculture and plant sciences. Yet, plants pose unique challenges: they undergo intricate non-rigid deformations, exhibit changing topology as new organs emerge, and often lack explicit temporal correspondences between consecutive data acquisitions due to newly formed tissue. Methods designed for general scenes struggle to model topology changes and asynchronous organ growth characteristic of plants. To address these challenges, we introduce GrowFields, a compositional dynamic neural field representation for organ-aware 4D plant growth modelling from point cloud time series. Our approach decomposes a plant into its constituent organs and aligns each organ into its own canonical coordinate frame, isolating intrinsic growth patterns from global plant motion. We then learn a shared continuous neural deformation field that models temporal dynamics across all organs, conditioned on learnable per-organ latent codes capturing organ identity and growth characteristics. The resulting modular yet unified representation naturally accommodates the asynchronous development of plant organs while remaining grounded in the practical setting of organ-level plant tracking. We evaluate GrowFields on growth sequences from four plant species, assessing geometric fitting and organ tracking accuracy using manually annotated leaf-tip trajectories. Results demonstrate consistent improvements in spatial precision, temporal coherence, and morphological fidelity over a range of existing representations.
Joaquin Gajardo, Michele Volpi, Marko Mihajlovic +3
Recent 4D generation methods complete scene-level missing information using generative models and reconstruct the scene into radiance-based representations. However, these pipelines often present geometric inconsistencies in the generated content, and the radiance-based reconstruction requires expensive optimization. Furthermore, radiance-based representations often absorb these geometric inconsistencies into their view-dependent nature, failing to enforce the grounded geometric consistency. To address these issues, we propose Geometric 4D Stitching, an efficient framework that explicitly identifies missing geometric regions and complements them with geometrically grounded 4D stitches. As a result, our method constructs 4D scene representations in under 10 minutes on a single NVIDIA RTX 5090 GPU per one-step scene expansion, while improving geometric consistency. Moreover, we demonstrate that our explicit 4D stitching supports interative expansion of 4D mesh as well as 4D scene editing.
Accurate 3D plant organ segmentation is fundamental to automated phenotyping. Existing approaches rely on annotated training data or species-specific model configurations. We present an annotation-free pipeline for 3D plant organ segmentation, combining text-prompted SAM3 segmentation with semantic neural radiance fields (NeRFs). Given only multi-view RGB images and a list of class names, our zero-shot pipeline produces semantically labeled 3D point clouds without manual annotation, per-species fine-tuning, or domain-specific preprocessing. Multi-view NeRF fusion acts as effective implicit consensus mechanism that lifts imperfect per-frame masks into accurate 3D labels. On a controlled Begonia maculata testbed the SAM3 pipeline achieves 92.6% mIoU, reaching 95.9% of the oracle upper bound established with perfect ground-truth masks. The pipeline was further evaluated on a new dataset spanning ten diverse plant point clouds reaching an average 0.856 mIoU, with leaf and pot IoU above 0.91 and 0.90 for every species, respectively. These results demonstrate that annotation-free 3D plant organ segmentation is now feasible and approaching the range of supervised methods.