Above-Ground Biomass

Spatially continuous quantification of forest above-ground biomass (AGB) is what makes carbon accounting credible and mitigation strategies actionable. While field inventories provide high localized accuracy, they are spatially sparse; conversely, spaceborne LiDAR from the Global Ecosystem Dynamics Investigation (GEDI) offers broad biomass samples but lacks spatial continuity and systematic underestimation of high-biomass forests. This paper presents an operational framework centered on a single globally trained convolutional neural network (CNN) that is seamlessly adapted to each new landscape through a lightweight empirical field-calibration workflow. The global model combines optical (Sentinel-2), C-band SAR (Sentinel-1), L-band SAR (ALOS-2 PALSAR-2), and terrain (DEM) data. It is trained once against GEDI Level-4A biomass reference data spanning multiple regions and both wet and dry seasons so that it learns the persistent woody-structure rather than a single-date appearance. To avoid retraining for every landscape, the framework applies a small number of local field plots to fit a scale-and-bias correction that aligns the global prediction with ground truth in each region. The pipeline harmonizes sensor data onto a shared 10 m grid, derives vegetation indices and polarimetric ratios, computes per-band normalization stats, and trains the CNN with a hybrid log-domain SmoothL1 with RMSE loss for skewed biomass distribution. On held-out validation the global GEDI-based model achieved R^2 approximately 0.78 and RMSE approximately 22 Mg/ha. A subsequent field calibration combining Random Forest fine-tuning under a 10-fold cross-validation eliminates localized regional biases. This improves local validation performance to R^2 approximately 0.82 and reduces RMSE to approximately 15 Mg/ha, outperforming both the uncalibrated global model and the ESA CCI Biomass product against field plots.

Precision nitrogen (N) management (PNM) for cotton requires in-season monitoring of crop growth parameters and N status indicators to decide fertilizer timing, placement, and application rates for optimal canopy development and yield. This study developed remote sensing and machine learning-based methods to estimate cotton dry biomass weight (DBW), plant N uptake (PNU), plant N concentration (PNC), critical N dilution (Nc), and nitrogen nutrition index (NNI) to support PNM. To achieve this, a three-year field-based N-management study was conducted and unmanned aerial vehicle (UAV)-based multispectral images were acquired between early vegetative growth and flowering stages, critical for fertilizer applications. Spatiotemporally consistent spectral and morphological plant features, including plant height (PH) and fractional canopy cover (FCC), provided reliable model training inputs. DBW, PNU, and PNC estimates from simple regression using vegetation indices (VIs), multiple linear regression (MLR) combining VIs, PH, and FCC, and decision-tree models, random forest regression (RFR) and extreme gradient boosting (XGB), combining spectral reflectance, PH, and FCC were evaluated using trial-held-out (THO) and leave-one-year-out (LOYO) validation methods. The best validation accuracies were from RFRTHO (R2 = 0.88 and MAPE = 23.14% for DBW; R2 = 0.84 and MAPE = 20.61% for PNU; R2 = 0.85 and MAPE = 7.82% for PNC) and XGBTHO (R2 = 0.87 and MAPE = 21.91% for DBW; R2 = 0.81 and MAPE = 21.40% for PNU; R2 = 0.86 and MAPE = 7.66% for PNC). Nc was calculated from model estimated DBW and PNC for high-yielding, medium-to-tall cotton varieties grown in the Texas Coastal Plains and validated using ground-truth biomass measurements. NNI derived from XGBTHO outputs performed marginally better than NNI from RFRTHO in identifying N-deficient plots and multi-level N-stress categorization.

Accurate estimation of Above-Ground Biomass (AGB) from satellite imagery is essential for the large-scale monitoring of carbon stocks, yet it remains a challenging regression task at global scale. Geospatial Foundation Models (GFMs) have recently emerged as a promising machine learning paradigm to derive general-purpose representations from Earth observation data, but their utility for quantitative regression tasks like biomass estimation remains largely unexplored, as most benchmarks emphasize classification and segmentation. Here, we present a comprehensive benchmark of GFMs for global-scale AGB estimation using the AGBD dataset, a machine learning-ready benchmark spanning diverse biomes and geographies. We distinguish two ways in which GFMs reach practitioners: (i) models distributed as weights to be run by the user, which we evaluate as frozen encoders within the PANGAEA benchmarking framework; and (ii) models distributed as ready-to-use, pre-computed embedding products, for which we evaluate AlphaEarth Foundations (AEF) and TESSERA. We compare 11 GFMs available on PANGAEA and both embedding products against a fully supervised state-of-the-art (SOTA) model, assess their geographical and temporal generalization abilities, as well as agreement with the ESA CCI biomass product on independent reference data. Our results show that GFMs run as frozen encoders substantially underperform with respect to the supervised SOTA model, whereas pre-computed embedding products prove highly effective. An MLP trained on AEF embeddings outperforms the supervised SOTA model trained on AGBD features, and the same SOTA model trained on AEF embeddings (optionally augmented with selected raw features) achieves the best overall result, while also generalizing better across space and time.

In this paper, we propose a method for predicting bone volume fraction (BVF) and fracture position by constructing a random forest model based on multichannel S-parameters. A nine-antenna microwave scanning system is designed and fabricated to acquire the multichannel S-parameter data. Bone-mimicking phantoms are developed, and corresponding experiments are conducted to validate the effectiveness of the proposed approach. Both synthetic and experimental results demonstrate the validity of the method.

Earth Observation regression tasks such as building height, canopy height, and above-ground biomass estimation underpin critical applications in urban planning, forest monitoring, and climate policy, where both accuracy and reliability are critical. Yet most deep learning models yield only deterministic predictions, providing no indication of per-pixel reliability. These regression tasks are inherently challenging due to heterogeneous land surfaces, skewed target distributions, sensor noise, and signal saturation at high target values, making uncertainty (UC) estimation essential for reliable inference. We address this gap by modeling aleatoric uncertainty using year-long Sentinel-1 SAR and Sentinel-2 MSI time series, proposing two complementary approaches: (i) Gaussian UC, which jointly predicts mean and standard deviation under a Gaussian assumption, and (ii) Quantile UC, which estimates the 10th, 50th, and 90th quantiles to capture asymmetric and heteroscedastic error distributions. Both models are evaluated on three representative EO regression tasks at 10 m spatial resolution. Results show that both approaches match or surpass deterministic benchmarks and existing global products, while delivering well-calibrated, interpretable, and operationally useful confidence estimates. Notably, both models outperform the current 10 m state-of-the-art uncertainty-aware model for canopy height estimation. Our implementation will be available at: https://github.com/RituYadav92/EO-Regression-Uncertainty-Estimation

Conventional modeling approaches for LiDAR-based above-ground biomass (AGB) estimation rely on discrete plot-level inventory aggregates. This methodology introduces boundary-effect uncertainties that may severely degrade model performance within small field plots. To solve this limitation, we evaluate a Horizontal Biomass Distribution (HBD) reference mapped continuously from Quantitative Structure Models (QSMs). We trained a sparse 3D U-Net on simulated broadleaved forest structures using three AGB reference types: a standard forest inventory (FI) plot-level aggregate, an edge-effect-free QSM plot-level aggregate, and a continuous HBD mapping. Evaluating training plot sizes scaling from 100 to 2500 $m^2$ , QSM-based models systematically outperformed FI approaches at small plot sizes. Specifically, for 100 $m^2$ plots, the HBD reference reduced the relative root mean square error (RRMSE) by 16.84 $\pm$ 4.37 % and increased $R^2$ by 0.22 $\pm$ 0.05 against the FI baseline. By replacing plot level aggregates with HBDs as AGB reference, this methodology corrects for edge-effects and shows that using an HBD-based reference enhances model performance for small plot sizes.

The accurate estimation of Above-Ground Biomass (AGB) in mature tropical forests remains a critical challenge in remote sensing, primarily due to the saturation of Synthetic Aperture Radar (SAR) signals in high-density areas and persistent cloud cover affecting optical imagery. To overcome these physical limitations, we propose the Trimodal Coherent Co-attention Transformer (TCCT), a physics-informed deep learning architecture. The TCCT natively fuses optical surface reflectance (Landsat-5) with complex-valued Polarimetric SAR Interferometry (PolInSAR) data from both P and L bands. Unlike traditional fusion methods, our architecture employs complex-valued encoders to preserve spatial phase coherence, coupled with a dynamic co-attention mechanism that acts as an adaptive gating module, reducing the weight of cloud-corrupted optical pixels and shifting reliance to microwave phase data. We also derived a localized spatial allometric calibration model via Levenberg-Marquardt optimization, tailored to the specific wood density of the Paracou region in the Amazon basin. Evaluated using a two-stage protocol, the TCCT first underwent a rigorous 5-fold cross-validation to establish robust global weights (achieving a global RMSE of 4.19 m). Subsequently, following a localized spatial fine-tuning phase over 200 epochs, the model attained an absolute RMSE of 3.78 m and an $R^2$ of 0.33 for Canopy Height Models (CHM), outperforming standard Random Forest, CNN, and Vision Transformer baselines. Our ablation study confirms that preserving phase coherence mitigates deep-canopy signal saturation. When converted to AGB, the fine-tuned TCCT map yielded a Relative RMSE (rRMSE) of 4.51% in dense forest areas above 50 Mg/ha. By meeting the European Space Agency (ESA) BIOMASS mission requirement of less than 20% error, the TCCT provides a robust framework for continuous carbon stock mapping in tropical biomes.

Urban tree biomass remains less spatially explicitly quantified than biomass in managed forests because many estimates rely on inventories or coarse products that cannot resolve individual crowns or fine-scale heterogeneity. We present a crown-level above-ground biomass (AGB) framework for an 810km$^2$ landscape in Ontario, Canada, using leaf-off airborne LiDAR (8--10pulsesm$^{-2}$) and near-infrared RGB orthophotography (0.16--0.20m) from 2018 and 2023. A dual-stream cross-attention network trained on rule-based pseudo-labels produced semantic marks for buildings, needleleaf trees, and deciduous trees, supporting crown delineation and functional-type assignment. On independently annotated withheld tiles, global/mean precision, recall, and Dice scores were 0.86, 0.83, and 0.84. Crowns were delineated with multiscale watershed segmentation in mapped tree areas, and AGB was estimated from a crown area--height power-law proxy calibrated to species-specific allometry (Lambert et al., 2005) for 21,921 inventory trees. For 18,713 inventory--segment matched pairs from a 90,726-tree held-out test set, AGB prediction achieved $R^2=0.609$ using inventory crown geometry and $R^2=0.570$ under operational segmentation, identifying crown delineation as the remaining uncertainty source. Aggregated to 30m, estimates yielded total AGB stocks of 1.73Tg in 2018 and 1.81Tg in 2023 (811--850GgC), local densities up to ${\sim}140$Mgha$^{-1}$ along the Niagara Escarpment, and a net carbon gain of 39Gg~C over five years. Deep-ensemble uncertainty maps highlighted high-epistemic-uncertainty areas linked to underrepresented land covers and guided assignment of uncertain crowns to a pooled allometric equation. The framework uses standard provincial data, requires no manual annotation, and produces a public bitemporal crown-level AGB database for trees outside forests at management-relevant resolution.

Remote sensing is increasingly relied upon to deliver actionable science for forest and wildfire risk management across large landscapes. Wall-to-wall, annually updated maps are a persistent need for effective forest management. Many planning systems and data collections combine disparate data sources with different purposes, vintages, and prediction quality, which leads to confounding behavior in operational planning systems. We introduce the VibrantForests framework, developed and applied to map forest attributes and provide a coherent foundation for effective forest and wildfire planning. VibrantForests includes a satellite-based forest structure model trained on lidar-derived samples and applied across the contiguous United States to concurrently generate estimates of canopy cover, canopy height, aboveground live tree biomass, basal area, and quadratic mean diameter at 10-meter resolution. We demonstrate predictive capability spanning the full spectrum of forest conditions ranging from sparse-canopy/low-biomass to dense-canopy/high-biomass. Results show that our model extends the range at which saturation is commonly encountered in comparable passive-sensor models, and reduces regression-to-mean behavior that commonly produces overestimation of forest attributes in small/sparse conditions and underestimation in large/dense conditions. The VibrantForests framework addresses a key limitation in large-area forest and wildfire planning by delivering coherent wall-to-wall estimates of management-relevant attributes at annual cadence and 10m resolution.

Accurate, spatially explicit characterization of tropical forest structure is essential for carbon accounting and ecosystem monitoring, yet most ML pipelines predict canopy-top height proxies (e.g., RH95/RH98) or AGBD as separate scalar targets, rather than learning the forest vertical structure as an ordered profile. The community lacks a ML-ready multimodal benchmark for predicting the entire GEDI RH profile jointly with AGBD, or for evaluating methods that enforce physically consistent ordering across RH percentiles. We address this with Biomazon, a 20 m multimodal benchmark dataset over the Amazon Basin that pairs GEDI RH and AGBD targets with multi-sensor predictors (Sentinel-1/2, ALOS-2 PALSAR-2, Copernicus DEM, Dynamic World LULC, and AlphaEarth embeddings) under standardized spatial splits and evaluation protocols. Using a shared encoder-decoder with task-specific heads as a baseline framework, we conduct a comprehensive ablation study of (i) backbone/model scale, (ii) modality contributions, and (iii) the use of auxiliary embeddings under standalone and fusion settings, and we report both single-target and joint-target results to quantify tradeoffs under a unified training protocol. Finally, we contextualize baseline performance through regionally aligned comparisons against existing gridded products, including GEDI L4D RH10-RH98 and AGBD, at matching temporal scale. Biomazon, together with the accompanying protocols and baseline results, establishes a reference benchmark for future work on structurally consistent RH-profile prediction and structure-biomass modeling in tropical forests.

Alternatives to soil-based horticulture, such as hydroponics, have been developed to respond to food distribution concerns for dense urban centers. A new system was developed to track an individual lettuce plant's growth in a hydroponic environment, utilizing streams of measured information and available models to continuously update the growth trajectory estimates for a plant. These "digital twin" models were integrated into an operating hydroponic greenhouse, with custom horticultural and sensor hardware to grow and measure relevant information. To aid in updating model parameters, plant yield was continuously measured with a custom neural network, using RGB-D images of the plants as an input. The network, trained on a collected dataset of 1300 images, was able to estimate mass within 1.5 g of the ground-truth value. After integration into the custom system, digital twin growth projections could approximate future yield between one and four days in the future, maintaining around a 2 g forecasting error.

Estimating forest aboveground biomass (AGB) from Earth observation combines two structurally incompatible label sources: spaceborne lidar provides canopy structure at millions of locations but no biomass estimate, and ground-based plots provide biomass at thousands of biased locations but no metrics of structure. No single training sample carries labels for all target variables, plot labels are missing not at random (MNAR), and biomass is linked to the structural variables by known but biome-specific allometric laws. We formalise this as multi-task dense regression under heterogeneous disjoint partial supervision with MNAR labels and inter-task physical constraints, and propose StruMPL to address it jointly. A shared encoder feeds per-variable regression, imputation, and propensity heads for spatial MNAR correction, and a learnable physics module that evaluates the inter-task constraint on the model's own predictions at every pixel. The supervised loss uses an Augmented IPW (AIPW) pseudo-outcome with stop-gradients on the propensity and on the imputation baseline; we show analytically and empirically that both are necessary for joint optimisation to recover IPW-weighted stationary points while keeping the loss bounded. On two ecologically distinct biomes, StruMPL outperforms ablation variants and the closest published method on AGB RMSE and bias, with a stratified analysis showing AIPW reduces high-AGB bias by ~54%.

Quantifying fish community structure is essential for understanding biodiversity and ecosystem responses in a changing environment, yet existing survey methods provide limited high-frequency, quantitative observations. Conventional approaches, including catch-based methods, underwater visual censuses, and environmental DNA metabarcoding, either require intensive labor or lack reliable estimates of abundance and biomass. Here, we develop an automated framework for quantifying fish communities from underwater video using computer vision. Using videos acquired with a custom-made stereo camera system, the framework integrates deep learning-based fish identification, multi-object tracking, and 3D reconstruction to estimate species-level abundance and biomass. We applied the approach to a reef fish community over a 20-day period with hourly daytime observations, revealing dynamic fluctuations in species richness, abundance, and biomass associated with changes in species composition. By comparing fish communities estimated from visual census and environmental DNA surveys, we demonstrate that our method provides complementary strengths for continuous, non-invasive, and quantitative monitoring of consistently observed species. This approach provides a scalable foundation for long-term monitoring and advances the capacity to resolve fine-scale temporal dynamics in fish communities.

We present a curated multi-platform LiDAR reference dataset from an instrumented ICOS forest plot, explicitly designed to support calibration, benchmarking, and integration of 3D structural data with ecological observations and standard allometric models. The dataset integrates UAV-borne laser scanning (ULS) to measure canopy coverage, terrestrial laser scanning (TLS) for detailed stem mapping, and backpack mobile laser scanning (MLS) with real-time SLAM for efficient sub-canopy acquisition. We focus on the control plot with the most complete and internally consistent registration, where TLS point clouds (~333 million points) are complemented by ULS and MLS data capturing canopy and understory strata. Marker-free, SLAM-aware protocols were used to reduce field and processing time, while manual and automated methods were combined. Final products are available in LAZ and E57 formats with UTM coordinates, together with registration reports for reproducibility. The dataset provides a benchmark for testing registration methods, evaluating scanning efficiency, and linking point clouds with segmentation, quantitative structure models, and allometric biomass estimation. By situating the acquisitions at a long-term ICOS site, it is explicitly linked to 3D structure with decades of ecological and flux measurements. More broadly, it illustrates how TLS, MLS, and ULS can be combined for repeated inventories and digital twins of forest ecosystems.