Cross-Subject EEG Decoding

The development of generalizable electroencephalography (EEG) decoding models is essential for robust brain-computer interfaces (BCI) and objective neural biomarkers in mental health. Conventional approaches have been hindered by poor cross-subject and cross-task generalization, owing to high inter-subject variability and non-stationary neural signals. We address this challenge with a zero-shot cross-subject decoding framework on the large-scale Healthy Brain Network dataset, benchmarking a convolutional neural network baseline, a hybrid LSTM, and a Transformer-based foundation model. To adapt the Transformer for regression while averting catastrophic forgetting, we propose a novel progressive unfreezing strategy. The baseline yielded an nRMSE of 0.9991, whereas our fine-tuned Transformer achieved 0.9799 on unseen subjects. This work advances scalable, calibration-free EEG decoding for computational psychiatry and behavioral prediction.

Objective. EEG foundation models (FMs) report strong accuracy on clinical resting-state EEG. However, high accuracy under subject-disjoint cross-validation remains ambiguous: it can reflect a genuine clinical biomarker, or subject-identity features that correlate with the label. We name this the Identity Trap and ask whether it can be diagnosed at the representation level before fine-tuning. Approach. We propose FMScope, a frozen-representation protocol packaging five diagnostics: variance decomposition, subject-axis erasure, aperiodic 1/f ablation, layer-wise label probing, and within-subject direction consistency. We apply it to three pretrained FMs (LaBraM, CBraMod, REVE) across four datasets in a 2x2 layout: subject relation of label x presence of a consensus cross-subject EEG marker. Main results. (i) The Identity Trap is universal: frozen subject-variance is 13-89x a random null in 12/12 pairs, rising in all 12 under fine-tuning (+10 to +63 pp). This dominance is a removable linear axis: erasing it improves label decoding where the label varies within subject (+6 to +12 pp in primary cells; +4 to +27 pp across external cohorts). (ii) Aperiodic 1/f is one subject carrier: removing it drops the subject probe by 9-19 pp on LaBraM and CBraMod. REVE saturates subject identity without measurable aperiodic dependence. (iii) Fine-tuning amplifies label-variance only in cells with a literature-established cross-subject marker. Significance. The Identity Trap is a physically-grounded instance of shortcut learning: the preferred cue has a measurable physiological component, and subject-disjoint splitting alone cannot rule it out. FMScope separates gains reflecting a biological marker from those reflecting subject identity.

Interpretable brain-computer interface classifiers that generalize across subjects without calibration remain an open challenge. We test whether prototype-based cross-attention can provide competitive, interpretable event-related potential (ERP) classification under deployment-compatible conditions. We propose ERP-XTTN, a cross-attention architecture that routes input EEG patches to fixed difference-wave prototypes via query-key-only cross-attention with no value projection, so classification depends entirely on attention routing and attention faithfulness is structural rather than post-hoc. Prototypes are derived automatically from extrema in the training-fold difference wave. We evaluate across three public sources (BNCI Horizon 2020, HRI Cursor, and ERP CORE) spanning eight ERP components (ERN, LRP, ErrP, N170, P300, N2pc, MMN, N400), using leave-one-subject-out (LOSO) evaluation with causal filtering at two channel counts (3-channel and full montage), against EEGNet and xDAWN with Riemannian geometry (xDAWN+RG). The mean gap between the best baseline and ERP-XTTN was .018 AUROC at 3 channels and .034 at full montage, arising from two largely distinct sources: a temporal-flexibility cost relative to EEGNet and a spatial-exploitation cost relative to xDAWN+RG, the latter driven by signal-to-noise ratio at full montage. Beyond accuracy, the transparent routing reveals cross-subject signal structure that black-box models cannot: false positives resembled true positives more than true negatives did, indicating that classification errors are neurophysiologically explicable. ERP-XTTN generalizes across diverse ERPs under causal, calibration-free conditions with a small interpretability cost at minimal montages. To our knowledge, this is the first epoch-level LOSO benchmark on ERP CORE.

Practical non-invasive Brain-Computer Interface (BCI) systems require EEG decoders with strong cross-subject generalization and minimal calibration. However, inter-subject variability and signal non-stationarity often entangle motor semantics with subject-specific noise, limiting subject-independent decoding. Recent multimodal approaches use text as a semantic anchor, yet text provides sparse and static supervision for inherently dynamic motor processes. To address this issue, we propose EVA-Net, a two-stage framework that uses action videos as semantic priors for subject-independent EEG motor decoding. In the first stage, EEG and video features are aligned in a shared space using cross-modal and supervised contrastive objectives to reduce subject-specific variation. In the second stage, video category prototypes and knowledge distillation transfer video-derived priors to an EEG-only classifier without adding inference overhead. Experiments on two public datasets show that EVA-Net achieves strong subject-independent decoding performance, including an 8.66% LOSO accuracy gain on EEGMMI. Ablation results further suggest that video provides a more effective semantic anchor than the text baseline considered in this work.

In cross-subject EEG emotion decoding, neighboring windows can inform the representation of a target window, but they contain both background variation and sustained task signals. This creates a challenge for contextual representation learning because subtracting shared activity can also remove useful information. We introduce the Morlet Spectral Transformer (MST), which conditions target-window tokens on a structured spectral summary before attention. MST averages the Morlet log-amplitude spectra of unlabeled same-trial neighbors and uses frequency-specific electrode projections to combine the target spectrum with its reference-relative residual. This retains access to absolute activity while incorporating context into a fixed attended target-token grid. Without external pretraining, MST achieves 66.5%, 40.7%, 36.1%, and 27.9% accuracy on SEED, SEED-IV, SEED-V, and SEED-VII under leave-one-subject-out evaluation, averaged over three random seeds, outperforming the evaluated pretrained and from-scratch baselines. On FACED, MST achieves 17.52% accuracy in nine-class cross-subject evaluation, exceeding the strongest evaluated baseline by 1.15 percentage points. We also performed the ablation studies across all 15 SEED subjects to evaluate the contribution of different components of MST.

Cross-domain EEG decoding remains challenging despite advances in Riemannian deep learning: covariance matrices from different subjects occupy systematically distinct regions of the SPD manifold, yet existing domain adaptation methods either require target-domain calibration data or learn subject-specific components that cannot generalise across domains. We propose dynamic Stiefel routing: a pool of $K$ expert projection filters on the Stiefel manifold, each specialised for a different region of the SPD manifold, with each input covariance routed to the most appropriate filter via cross-attention, adapting the subspace projection per sample. A central finding is that this approach, implemented naively, provably collapses to ensemble averaging: when routing weights are uniform, the adaptive filter reduces exactly to an equal-contribution combination of experts, indistinguishable from a single fixed filter. Three structural properties break this degeneracy: a symmetric anchor $W_{\mathrm{base}} \in \mathrm{St}(n,k)$ that removes proximity bias among experts; a frozen domain-discriminative query encoder that decouples routing from task optimisation; and a decoupled key alignment loss that trains expert keys toward stable domain attractors. Together they produce the first genuinely committed and domain-structured routing on SPD manifolds, with consistent gains across three datasets: balanced accuracy improves from $0.773\to 0.823$, $0.757\to 0.809$, and $0.801\to 0.839$, with the alignment strategy determined automatically by a single data-driven rule and no dataset-specific hyperparameter search.

A central challenge in electroencephalography (EEG) foundation modeling is learning transferable representations across recordings with diverse tasks, montages, references, and spectral characteristics. Existing masked modeling approaches often rely on broadband continuous patches or a single discrete representation, which may underrepresent frequency-specific activity. This paper proposes BandVQ, a band-wise vector-quantized EEG foundation model that decomposes EEG into delta, theta, alpha, beta, and gamma bands, trains an independent VQ-VAE tokenizer for each band, and pretrains a shared Transformer encoder on the resulting discrete VQ code indices. The encoder uses masked code tokens, quantized absolute log-power tokens, channel and temporal embeddings, and metadata prefix tokens representing reference, band, task family, and phase. Region-based masking is also introduced to reduce the trivial reconstruction of spatially adjacent electrodes. The model is pretrained on 71 public EEG corpora comprising over 9,200 subjects and 357,000 single-channel hours and evaluated on six subject-independent classification datasets. Under the current evaluation setting, the proposed model achieves strong transfer performance, with the highest reported results on three cognitive tasks and competitive performance on three motor imagery tasks.

With the advancement of science and technology, the importance of emotion research has become increasingly evident. Electroencephalography (EEG)-based emotion recognition has emerged as an active research area in recent years, owing to its objectivity and high temporal resolution. However, most existing methods focus on optimizing encoder structures to enhance feature extraction capabilities, while paying relatively little attention to similarity calculation strategies, particularly overlooking the potential temporal misalignment of responses among different subjects. To address these shortcomings, this paper draws inspiration from the late interaction mechanism of ColBERT in natural language processing (NLP) and proposes a Temporal Asynchronous Alignment-based Contrastive Learning (TA2CL) framework. This method transforms the traditional global "hard alignment" similarity calculation approach into a fine-grained local matching mechanism, enabling the model to adaptively search for and align "locally highly correlated" segments between two EEG signals, thereby effectively mitigating the effects of inter-subject differences and temporal delays. Experimental results demonstrate that the proposed method achieves strong performance across multiple public datasets. Specifically, on the FACED dataset, it achieves an accuracy of 64.5% for the nine-class classification task and 79.5% for the binary classification task, while on the SEED and SEED-V datasets, it achieves accuracies of 86.4% and 70.1%, respectively, validating the method's effectiveness and generalization capability.

Intracranial EEG (iEEG) provides high-fidelity neural recordings essential for clinical and brain-computer interface applications, but acquiring these signals requires invasive surgery. While recent studies have attempted to estimate iEEG from non-invasive scalp EEG, most rely on patient-specific models, creating a circular dependency: if surgery is required to collect training data, the non-invasive model offers limited practical benefit. In this study, we address the challenge of cross-subject iEEG reconstruction by predicting intracranial signals for unseen patients using models trained on other individuals. We propose CAST (Cross-Attention Spatial-Temporal Transformer), a machine learning framework that translates scalp EEG into multi-channel iEEG waveforms through a two-stage transfer learning strategy. First, a temporal encoder extracts multi-scale neural representations at three different resolutions. Then, because electrode placements vary substantially across patients, a channel-aware decoder is calibrated using only a few minutes of data from the target subject. We evaluated the proposed method using leave-one-subject-out cross-validation on two public datasets comprising 1,282 iEEG channels. Experimental results demonstrate that CAST reconstructs cortical signals located near the scalp surface substantially better than deep subcortical activity. In highly observable sensorimotor regions, the model achieved peak correlations of up to r=0.864 in the precentral gyrus. Furthermore, with a channel selection strategy, CAST obtained a mean correlation of r=0.545 on viable subjects, outperforming previous within-subject baselines. These findings indicate that cortical iEEG signals can be reconstructed for unseen subjects from scalp EEG without extensive patient-specific training, and that only a brief calibration phase is sufficient to adapt the model to new hardware configurations.

Motor imagery electroencephalography (MI-EEG) decoding offers a non-invasive route for post-stroke rehabilitation, but cross-patient use remains difficult because pathological neural reorganization changes task-related EEG dynamics, aperiodic activity, local excitability, cross-regional coordination, and trial-level brain-state context. This makes source-learned MI representations unreliable for unseen patients. To address this problem, we propose CFSPMNet, a cross-patient adaptation framework that models post-stroke MI-EEG as latent neural-state organization. CFSPMNet combines a Fourier-Reorganized State Mamba Network (FRSM) with Shared-Private Prototype Matching (SPPM). FRSM represents each trial as a latent physiological token sequence, reorganizes token states in the Fourier domain, and uses Fourier-derived trial context to guide Mamba state-space propagation. SPPM improves target pseudo-label updating by combining semantic confidence with shared-private physiological consistency, filtering confident but physiologically inconsistent target predictions. Leave-one-subject-out experiments on two stroke MI-EEG datasets show that CFSPMNet outperforms representative CNN-, Transformer-, Mamba-, and adaptation-based baselines, achieving average accuracies of 68.23% on XW-Stroke and 73.33% on 2019-Stroke, with gains of 5.63 and 8.25 percentage points over the strongest competitors. Ablation, sensitivity, feature-alignment, pseudo-label selection, and neurophysiological visualization analyses further support the roles of Fourier-domain token-state reorganization and calibrated pseudo-label updating. These results suggest that latent neural-state modeling can improve rehabilitation-oriented cross-patient BCI decoding. Code is available at https://github.com/wxk1224/CFSPMNet.

Deep learning for cross-subject EEG decoding is hindered by high inter-subject variability, which introduces a severe domain shift between training and unseen test subjects. This survey presents a comprehensive review of deep learning methodologies specifically engineered to address this cross-subject generalization challenge. To ground this analysis, we formalize the cross-subject setting as a multi-source domain problem and delineate the rigorous, subject-independent evaluation protocols required for valid assessment. Central to this survey is a systematic taxonomy of the current literature into discrete methodological families, including feature alignment, adversarial learning, feature disentanglement, and contrastive learning. We conclude by examining three critical elements for advancing robust, real-world decoding: the theoretical limitations of current methodologies, the structural value of subject identity, and the emergence of EEG foundation models.

We tested whether auditory-evoked EEG supports subject-independent five-vowel perception decoding when trial identity, model identity, prediction provenance, and participant-level inference are controlled within a single benchmark. We reconstructed Study 2 event tables from OpenNeuro ds006104 version 1.0.1 and analysed the consonant-vowel pair task. One-to-one marker-stimulus pairing yielded 3,840 independent trials; control-condition selection and artifact rejection retained 1,094 epochs from 16 participants and 61 EEG channels. Thirteen unique implementations were evaluated using leave-one-subject-out testing, with participant metrics reconstructed from 36,102 trial predictions across 33 complete prediction replicas. Random Forest was numerically highest at 21.474% balanced accuracy (95% participant-bootstrap interval, 19.526-23.482%; chance, 20%), but neither its participant-level tests nor any implementation survived correction across the 13-model family. Deep-model performance was close to chance, and several architectures showed substantial seed-dependent variation and low trial-label agreement. An exploratory MDM analysis comprising 9,616 genuine refits across training cohorts of 3-15 participants showed no monotonic performance gain. Within this dataset and protocol, evidence for reliable cross-subject five-vowel decoding is limited. The benchmark provides a reproducible chain from source rows to retained epochs, predictions, participant-level metrics, multiplicity-adjusted inference, and bounded diagnostic analyses.

Source-free domain adaptation (SFDA) provides a practical solution to cross-subject EEG decoding by adapting source-pretrained models to unlabeled target domains without accessing source data. However, existing SFDA methods rely solely on the limited internal knowledge of source-pretrained models, leading to inferior cross-domain generalization and unreliable pseudo-labels. Although EEG Foundation Models (FMs) pretrained on large-scale data exhibit strong generalizability, their potential in SFDA remains largely unexplored. To this end, we propose FUSED, a Foundation-guided Source-free EEG Decoding framework that integrates a large-scale FM with a compact Specialist Model (SM) via dual-branch co-adaptation. Specifically, we introduce a Co-adaptation mechanism equipping both branches with linear and prototype views, enabling cross-branch pseudo-label generation. Additionally, we design a Consensus Filtering Mechanism that exploits the FM's inherent stability to identify high-quality samples, along with a Two-Stage Pseudo-Label Refinement scheme to suppress error accumulation through cross-branch arbitration. Finally, we calibrate the FM's decision boundaries via mutual information maximization with the SM, followed by knowledge distillation from FM to SM, forming a principled calibrate-then-distill pipeline. To our knowledge, FUSED is the first work to leverage EEG FMs within the SFDA framework for cross-subject EEG decoding. Extensive experiments across three EEG paradigms, including motor imagery, emotion recognition, and SSVEP, demonstrate consistent state-of-the-art performance, validating the effectiveness of foundation-guided synergy for robust and privacy-preserving EEG decoding.

In real-world applications of noninvasive electroencephalography (EEG), specialized decoders often show limited generalizability across diverse tasks under subject-independent settings. One central challenge is that task-relevant EEG signals often follow different temporal organization patterns across tasks, while many existing methods rely on task-tailored architectural designs that introduce task-specific temporal inductive biases. This mismatch makes it difficult to adapt temporal modeling across tasks without changing the model configuration. To address these challenges, we propose DSAINet, an efficient dual-scale attentive interaction network for general EEG decoding. Specifically, DSAINet constructs shared spatiotemporal token representations from raw EEG signals and models diverse temporal dynamics through parallel convolutional branches at fine and coarse scales. The resulting representations are then adaptively refined by intra-branch attention to emphasize salient scale-specific patterns and by inter-branch attention to integrate task-relevant features across scales, followed by adaptive token aggregation to yield a compact representation for prediction. Extensive experiments on five downstream EEG decoding tasks across ten public datasets show that DSAINet consistently outperforms 13 representative baselines under strict subject-independent evaluation. Notably, this performance is achieved using the same architecture hyperparameters across datasets. Moreover, DSAINet achieves a favorable accuracy-efficiency trade-off with only about 77K trainable parameters and provides interpretable neurophysiological insights. The code is publicly available at https://github.com/zy0929/DSAINet.

Stroke patient cross-subject electroencephalography (EEG) decoding of motor imagery (MI) brain-computer interface (BCI) is essential for motor rehabilitation, yet lesion-related abnormal temporal dynamics and pronounced inter-patient heterogeneity often undermine generalization. Existing adaptation methods are easily misled by pathological slow-wave activity and unstable target-domain pseudo-labels. To address this challenge, we propose PA-TCNet, a pathology-aware temporal calibration framework with physiology-guided target refinement for stroke motor imagery decoding. PA-TCNet integrates two coordinated components. The Pathology-aware Rhythmic State Mamba (PRSM) module decomposes EEG spatiotemporal features into slowly varying rhythmic context and fast transient perturbations, injecting the fused pathological context into selective state propagation to more effectively capture abnormal temporal dynamics. The Physiology-Guided Target Calibration (PGTC) module constructs source-domain sensorimotor region-of-interest templates, imposing physiological consistency constraints and dynamically refining target-domain pseudo-labels, thereby improving adaptation reliability. Leave-one-subject-out experiments on two independent stroke EEG datasets, XW-Stroke and 2019-Stroke, yielded mean accuracies of 66.56% and 72.75%, respectively, outperforming state-of-the-art baselines. These results indicate that jointly modeling pathological temporal dynamics and physiology-constrained pseudo-supervision can provide more robust cross-subject initialization for personalized post-stroke MI-BCI rehabilitation. The implemented code is available at https://github.com/wxk1224/PA-TCNet.

Electroencephalography (EEG)-based emotion recognition remains challenging in cross-subject settings due to severe inter-subject variability. Existing methods mainly learn subject-invariant features, but often under-exploit stimulus-locked group regularities shared across subjects. To address this issue, we propose the Group Resonance Network (GRN), which integrates individual EEG dynamics with offline group resonance modeling. GRN contains three components: an individual encoder for band-wise EEG features, a set of learnable group prototypes for prototype-induced resonance, and a multi-subject resonance branch that encodes PLV/coherence-based synchrony with a small reference set. A resonance-aware fusion module combines individual and group-level representations for final classification. Experiments on SEED and DEAP under both subject-dependent and leave-one-subject-out protocols show that GRN consistently outperforms competitive baselines, while additional analyses confirm the effects of prototype learning, PLV/coherence resonance, and leakage-safe reference construction.

Cross-subject motor imagery decoding remains a fundamental challenge in EEG-based brain-computer interfaces due to substantial inter-subject variability. Recent approaches have leveraged Riemannian geometry by representing EEG signals as covariance matrices on the symmetric positive definite (SPD) manifold. However, existing methods primarily focus on manifold-based representations while largely overlooking subject-specific variations in covariance dispersion and orientation. In this work, we address these challenges through geometry-aware congruence transformations and propose three complementary models: (i) Discriminative Congruence Transform (DCT), (ii) Deep Linear DCT (DLDCT), and (iii) Deep DCT-UNet (DDCT-UNet). The proposed models are evaluated both as manifold alignment modules for downstream classifiers and as end-to-end discriminative architectures optimized via cross-entropy with a custom logistic regression head. Experiments on challenging cross-subject motor imagery benchmarks demonstrate consistent improvements in transductive decoding performance, achieving 2-3% higher accuracy than strong baselines. These results highlight the effectiveness of geometry-aware congruence learning for mitigating inter-subject variability in EEG decoding.

Electroencephalography (EEG)-based emotion recognition plays a critical role in affective Brain-Computer Interfaces (aBCIs), yet its practical deployment remains limited by inter-subject variability, reliance on target-domain data, and unavoidable label noise. To address these challenges, we propose a Multi-domain Aggregation Transfer learning framework with domain-class prototypes (MAT) for emotion recognition under completely unseen target domains. MAT introduces a feature decoupling module to disentangle class-invariant domain features from domain-invariant class features, enabling more robust and interpretable EEG representations. A Hierarchical-Domain Aggregation (HDA) mechanism based on Maximum Mean Discrepancy (MMD) constructs superdomains to model shared distributional structures across subjects, while adaptive prototype updating refines domain and class prototypes to capture stable intrinsic representations. Moreover, a pairwise learning strategy reformulates classification as similarity estimation between sample pairs, effectively mitigating the effect of label noise. Extensive experiments on three public EEG emotion datasets (SEED, SEED-IV, and SEED-V) show that the accuracy of MAT is improved by 2.87%, 3.84%, and 2.05% compared with the state-of-the-art (SOTA) model for unseen target domains. Our results provide a promising direction for emotion recognition under real-world unseen-subject scenarios.The source code is available at https://github.com/WuCB-BCI/MAT.

Cross-subject motor-imagery electroencephalography (MI-EEG) decoding remains challenging because substantial inter-subject variability can cause both negative transfer from poorly matched source subjects and persistent distribution discrepancies between source and target domains. Existing multi-source domain adaptation methods often incorporate all available source domains or estimate source relevance using signal-level or task-specific representations, while distribution alignment is frequently performed only at the feature level. These limitations may introduce irrelevant source knowledge and fail to preserve class-discriminative structures across subjects. In this study, we propose a brain foundation model-guided multi-source domain adaptation framework (BFM-MSDA) for cross-subject MI-EEG decoding. The method first utilizes representations learned by a pretrained brain foundation model to estimate source--target compatibility and retrieve target-relevant sources. Subsequently, a relevance-weighted dual alignment strategy is applied to the selected sources and the unlabeled target domain. Specifically, Cauchy--Schwarz (CS) divergence is used to reduce discrepancies in marginal feature distributions, while conditional Cauchy--Schwarz (CCS) divergence further aligns class-dependent decision distributions. Source relevance is incorporated into both alignment terms so that more transferable source subjects contribute more strongly to adaptation. Experiments on two public MI-EEG benchmarks achieve average accuracies of 86.16% and 78.41%, outperforming representative cross-subject decoding and domain adaptation methods. Additional experiments with a large source pool further demonstrate that target-aware source retrieval improves scalability while mitigating negative transfer. These results highlight the importance of informed source selection under cross-subject distribution shift.