EEG Foundation Models

Self-supervised EEG models often reconstruct masked waveforms or predict discrete codes. We study a task-aligned alternative: masked band-power prediction (MBP), which predicts fixed narrow-band log spectral energy for masked channel-time patches. This target retains rhythm power relevant to sleep staging while avoiding phase-sensitive waveform reconstruction and a learned codebook. Across three pretraining seeds, we compare band-power and waveform targets with matched backbones, pretraining data (2,388 hours), and training steps, including a 2x2 tokenizer-by-target design. On ISRUC and HMC sleep staging, MBP exceeds raw- and band-waveform reconstruction by 1.6-2.8 balanced-accuracy points with all labels and 4.7-7.3 points with 1% of labels under a strict linear probe; the target effect exceeds the tokenizer effect. Its frozen features reach 0.7916/0.7425 balanced accuracy, versus 0.7636/0.7227 for a matched rich handcrafted spectral baseline, although the gap is about one point with 1% of labels. Full fine-tuning reaches 0.8107/0.7669. The gains do not extend to every task with spectral cues, including motor imagery, depression screening, and vigilance regression. These results support choosing pretraining targets to match the physical quantities and spatial and temporal scales relevant to downstream labels.

Large-scale EEG foundation models have demonstrated promising transferability across neurological disorders, but often require millions of parameters and substantial computational resources. In this paper, we present the Universal Semantic EEG Foundation Model (USE-FM), a lightweight EEG foundation model that learns transferable neural representations through self-supervised signal reconstruction on the Temple University Hospital EEG Corpus (TUEG). After pretraining, the encoder is frozen and evaluated on two clinically distinct downstream tasks, abnormal EEG detection (TUAB) and epileptic seizure recognition (TUEP), using a unified frozen-transfer protocol against recent EEG foundation models, including LUNA-Base and CBraMod. With only 1.46 million parameters, approximately one-fifth the size of existing models, USE-FM achieves competitive overall performance, including strong sensitivity and F1-score on TUEP (SEN $75.00 \pm 14.14$, F1 $70.37 \pm 4.01$), while maintaining competitive performance on TUAB (AUC $85.24 \pm 5.61$). Beyond downstream classification, latent representation analysis using $k$-means clustering together with PCA and t-SNE demonstrates that USE-FM learns organized semantic EEG representations comparable to substantially larger foundation models. These results suggest that large-scale self-supervised pretraining enables lightweight architectures to learn transferable semantic EEG representations, providing a computationally efficient foundation for cross-disorder analysis and future clinical decision support in neurological disorders.

Electroencephalography (EEG) foundation models are often pretrained with a fixed channel vocabulary or a limited set of montages, making transfer difficult when electrode layouts change. We propose CortexBridge, a lightweight adapter that combines EEG features with electrode and atlas coordinates to map arbitrary montages into a shared cortical latent space. Evaluated with three frozen foundation models on five brain-computer interface (BCI) datasets from the Mother of All BCI Benchmarks (MOABB), CortexBridge improves performance in 13 of 15 evaluations. The gains in balanced accuracy average 0.80% for EEGPT, 0.70% for LaBraM, and 3.26% for CBraMod, with a maximum gain of 13.02% on 12-class steady-state visual evoked potential (SSVEP) classification. Visualizations of the learned atlas representations reveal task-dependent spatial patterns, with SSVEP showing a more concentrated representation in the Yeo Visual network than auditory P300. These results establish cortical alignment as a learnable and anatomically grounded routing mechanism from heterogeneous EEG montages to pretrained foundation models.

Electroencephalography (EEG) is recorded continuously over hours, with relevant dynamics spanning timescales from milliseconds to hours. Most EEG foundation models nevertheless process fixed windows independently, limiting their ability to capture information encoded in long-timescale dynamics. State-space architectures enable persistent recurrent processing, but long-range information remains implicitly compressed in recurrent states. We present NeurDuo-EEG, a causal EEG foundation model with channel-resolved persistent memory. NeurDuo-EEG introduces multi-timescale memory management with learned consolidation and selective retrieval, enabling persistent modelling of continuous EEG with fixed-size state. It is pre-trained on 3,955 hours of EEG from 17 public datasets using multichannel autoregressive prediction of discrete spectral codes. Across three short-window and two long-sequence downstream tasks, NeurDuo-EEG achieves the best performance on four of five benchmarks, including all three short-window tasks and seizure detection, where AUC-PR improves from $0.285$ to $0.471$ over the strongest non-NeurDuo baseline. NeurDuo-EEG also remains competitive on sleep staging and supports efficient streaming inference, with nearly constant per-chunk latency as the available history grows to one hour. Notably, the Small variant achieves this with only 4.7M backbone parameters. These results demonstrate the value of persistent, multi-timescale modelling for both long-sequence and short-window EEG analysis. Our code is available at https://github.com/YifaNNW/NeurDuo-EEG.

Clinicians and neuroscientists have long analyzed intracranial electroencephalography (iEEG) through directly measurable physiological characteristics, which carry much of the information that downstream tasks depend on. Recent iEEG foundation models learn by reconstructing or predicting their inputs, which leaves the retention of these characteristics implicit. They are also evaluated mainly on cognitive decoding and a narrow clinical task, i.e., seizure detection. On a broad, clinically relevant benchmark such as Omni-iEEG, they remain below task-specific models when used frozen. We introduce PHASE, a physiology-guided foundation model that makes these characteristics explicit learning targets, pairing them with masked latent prediction in a temporal stage (PHASE-T) within each channel and a spatiotemporal stage (PHASE-ST) across synchronized channels. PHASE is pretrained on heterogeneous recordings from 222 participants at nine clinical sites. On all five Omni-iEEG clinical tasks, frozen PHASE-T outperforms every evaluated foundation model by up to 31%, and fine-tuned PHASE-T surpasses the task-specific models, setting a new state of the art. PHASE-T benefits from physiological supervision, outperforming variants trained with latent prediction alone or auxiliary waveform reconstruction on every task in matched ablations. PHASE-T generalizes to unseen institutions, outperforming the compared models with few or no local labels. PHASE-ST further improves seizure-onset-zone identification over PHASE-T and, when frozen, decodes sound volume and pitch on BrainTreebank better than published models. Beyond task performance, PHASE learns to encapsulate the physiological characteristics clinicians recognize, from seizure onset and its propagation to anatomical region identity, even though its pretraining contains no ictal recordings or anatomical labels.

Foundation models are increasingly adapted to individual users, but an apparent personalization gain can simply reflect a stronger population model. This distinction matters for brain-computer interfaces, where every new user must be calibrated. We evaluated personal adaptation of three frozen EEG foundation models (CBraMod, REVE and LaBraM) in 235 held-out subjects from three motor-imagery datasets, comparing each subject's adapter with the population model and with adapters fitted to other subjects. Using all first-half session labels, personal adapters improved mean balanced accuracy over the population model by 1.5-5.4 percentage points and outperformed exchanged adapters by 2.3-7.3 points in all nine model-dataset combinations. The size of this benefit depended on population training: with four times the original budget, median gains remained positive (1.0-2.0 points) but were smaller for every model, and no population model reached a confirmed plateau. Acquiring the benefit cheaply was unreliable: few-label calibration was consistently non-negative on only one dataset, and in CBraMod neither unlabeled context nor meta-learned initialization outperformed matched controls. Personalization should therefore be evaluated against both a population reference and exchanged parameters, across population-training budgets.

Physiological foundation models encode how a signal was recorded alongside the physiology it reflects. When recording conditions are associated with diagnosis, this acquisition provenance can become a shortcut, yet the usual evidence, shifted transfer and provenance decodability, does not show whether a predictor uses it. We introduce PhysioTRACE, a four-axis behavioral audit for frozen encoders that separates what a probe can decode from what a fixed task head relies on. Recover scores how decodable provenance is; Stress reverses only the provenance-target association on the same held-out records; Intervene removes a train-localized provenance component; and Verify certifies that removal only if it beats matched random projections within a declared utility margin. Each audit thus ends in one of three verdicts: no reliance, or reliance with the remedy certified or refused. Across EEG and ECG, five training objectives, and five frozen foundation models, the relation between Recover's calibrated score and out-of-distribution utility changes sign between datasets, so neither can stand in for a reliance test. On paired EEG views where the shortcut is known by construction, the audit detects it (the exposed head loses about 0.2 AUROC when the association is reversed, while a control head is unaffected) and certifies removal of a rank-two component that restores control-level behavior without measurable utility loss, for both encoder objectives tested. On real ECG device metadata it returns all three verdicts: it certifies a remedy that removes 91% of one model's excess vulnerability, finds no reliance where device and diagnosis are barely associated, and refuses the remedy for a second model whose localized direction also carries task signal. Robustness to how inputs were recorded therefore needs a behavioral test, and PhysioTRACE provides one that can pass, fail, or refuse a remedy.

Sparse autoencoders (SAEs) decompose dense model activations into discrete latents, making individual features easy to interpret--and easy to misinterpret. In EEG foundation models, this creates a tempting inference: if removing alpha-band activity strongly changes a latent's activation, one might conclude that the latent represents alpha activity. Across 27 settings spanning three backbones, three EEG datasets, and three network depths, this interpretation initially appears compelling: alpha removal changes latent firing 7.3 times more than an equal-width sham notch (95% CI [6.2, 8.7], bootstrapped over settings). However, the alpha filter also deletes far more signal than the sham. After normalizing by removed spectral energy, the ratio falls to 0.28 (95% CI [0.22, 0.36]) and exceeds one in none of the 27 settings. Latents selected for their response to alpha removal are, on clean EEG, slightly anti-correlated with relative alpha power (mean r = -0.073), giving no support for a simple alpha-detector reading. Motivated by this failure case, we propose a validation ladder for semantic interpretations of SAE latents: it asks in turn whether a latent responds, whether that response survives controlling for how much signal the intervention removes, whether it is specific rather than broadly fragile, and whether the proposed property is visible on unperturbed data--while separately testing the stronger claim that the latent matters to a task classifier. Perturbation sensitivity alone does not establish what an SAE latent represents.

EEG foundation models hold promise for scalable brain-signal decoding across clinical and cognitive neuroscience applications, yet their pre-training pipelines remain poorly understood. Among design choices, the masking strategy is particularly critical: it determines what the network must predict and from which context. Yet it has never been ablated in isolation, as each new model bundles a new masking strategy with a new backbone and objective. In this paper, we formalize the design choices for spatio-temporal masking strategies and train various models with a single pipeline under varying masking configurations across two SSL frameworks (MAE and JEPA). We then systematically evaluate the resulting 58 pre-trained models on the 12 datasets of OpenEEGBench under a linear probe. Both frameworks agree on an optimal masking configuration and on shared failure modes. Outside these, performance is robust: 11 MAE and 9 JEPA configurations are statistically indistinguishable from the best. We further identify a novel JEPA-specific failure mode, tagged bias-inflation collapse, invisible to standard detectors. With a well-chosen mask, our pipeline reaches REVE-level downstream performance at a fraction of REVE's pre-training compute.

Pretrained EEG foundation models are increasingly proposed as general-purpose encoders for brain-computer interfaces, yet recent benchmarks disagree about when their representations transfer to downstream tasks. We audit LaBraM and CBraMod on motor imagery under a validation-locked protocol in which preprocessing, architecture, optimization, freeze depth, checkpoint, temperature, and method selection are determined using training-session data only. On four-class BCI Competition IV-2a, every supervised comparator evaluated here outperforms every foundation-model configuration, including validation-selected fine-tuning. We then examine a key confound: foundation models and task-specific decoders are normally evaluated using different input pipelines. Retraining three supervised architectures on the broadband arrays consumed by the foundation models produces matched-input accuracy differences of opposite sign across architectures: broadband input improves ATCNet by 0.078 accuracy while reducing EEG Conformer accuracy by 0.088. None of the three individual matched-input terms is significant after multiple-comparison correction at n = 9, so we treat the sign variation descriptively rather than as a formal architecture-by-pipeline interaction. These observed sign differences suggest that a single comparator may not provide an architecture-invariant decomposition of a pretrained-versus-supervised performance gap. The four-class deficit also does not reproduce uniformly across motor-imagery datasets: on two-class BNCI2014-004 we cannot detect the same separation between fine-tuned CBraMod and the supervised comparators. Finally, validation-fitted temperature scaling returns foundation-model calibration error to the supervised range despite substantially lower four-class accuracy.

Effective EEG decoding requires representations that preserve organization among channels, local waveform dynamics, and long-range temporal context. Existing EEG architectures often capture these structures using separate specialized modules or collapse them into a single token sequence, making it difficult to maintain their distinct roles and coordinate their interactions throughout the backbone. We propose TriDim, a reusable block that preserves the representation shape and keeps three EEG axes explicit: channel, sample position within each patch, and patch position across the recording. These axes correspond to spatial, short-term temporal, and long-term temporal information, respectively. Each TriDim block applies feed-forward transformations along individual axes and cross-axis attention to coordinate information exchange among them. By stacking TriDim blocks with a multi-level tri-axis readout, we construct TriDimEEG, a standalone EEG decoder. Under strict cross-subject evaluation on eight datasets spanning clinical diagnosis, sleep staging, motor imagery, and emotion recognition, TriDimEEG achieves the best overall performance among fifteen evaluated models, with a 4.3% relative improvement in average accuracy over the second-best model. Replacing Transformer blocks in three EEG foundation models with TriDim blocks yields an average relative improvement of 7.4% in downstream accuracy while reducing parameter counts by 17.0% to 47.3%. These results establish TriDim as an effective and reusable building block and TriDimEEG as a strong standalone EEG decoder. Code and parameters of TriDimEEG are available at https://github.com/ncclab-sustech/TriDim_model.

Intracranial electroencephalography (iEEG) is widely used to record electrical activity directly from electrodes inside the human brain, making it an attractive modality for neural decoding. However, progress in iEEG decoding, especially toward general-purpose foundation models, remains difficult to measure reliably: datasets are task- or institution-specific, limiting evidence of generalization across tasks and recording environments, and preprocessing choices can strongly influence performance, making model improvements difficult to distinguish from preprocessing gains. Thus, we introduce iMINDBench, an iEEG Multi-Institution Neural Decoding Benchmark that evaluates models on a shared suite of fifteen decoding tasks across three naturalistic movie-watching datasets. The benchmark additionally defines standardized preprocessing tracks and fixed evaluation splits to support consistent model comparisons. Using iMINDBench, we find that the evaluated pretrained systems generally outperform baselines within their respective preprocessing tracks, while strong spectral baselines remain competitive across institutional datasets. In our scaling study, adding up to 25 times more supervised data from other subjects or institutions yields only small or task-dependent gains over within-session training. Together, these findings highlight the need for iEEG models that improve on strong preprocessing baselines and make more effective use of data across subjects and institutions. Project website: https://imindbench.github.io/

EEG decoding tasks can rely on different temporal dynamics and cross-channel relationships. We test whether specialized modules improve a fully fine-tuned EEG foundation model by augmenting CBraMod with cross-depth Attention Residuals (AttnRes) and two soft-routed expert banks. Across matched three-seed experiments on FACED, ISRUC, SEED-V, and PhysioNet-MI, the complete model changes mean balanced accuracy relative to full fine-tuning by -0.12, +1.27, +0.77, and -1.27 points, respectively. AttnRes alone improves mean balanced accuracy on three datasets, whereas adding experts on top of AttnRes helps only FACED and SEED-V. These gains come with substantial overhead: AttnRes requires 2.11 to 2.88x runtime and 1.78 to 2.67x memory, while the complete model requires 2.41 to 3.04x runtime and 1.86 to 2.85x memory. Overall, the added modules produce dataset-dependent, sometimes opposing effects rather than consistent gains over full fine-tuning.

Brain signal analysis is essential for both neuroscience research and clinical diagnostics, yet current approaches face critical limitations. End-to-end models require task-specific retraining and exhibit limited generalization, while pre-trained models lack semantic depth and still depend on extensive fine-tuning. Meanwhile, general-purpose multimodal foundation models, though powerful in other domains, struggle to interpret brain signals due to representational misalignment and lack of domain knowledge. This study introduces a multimodal foundation model for zero-shot and multi-task brain signal analysis (METIS) through a unified language-signal alignment framework. METIS is pretrained on the largest and most diverse brain-signal corpus to date, comprising over 70,000 h of recordings from more than 11,000 subjects across 20 datasets. In a comprehensive zero-shot evaluation across 12 datasets, METIS outperformed the leading generalist model by over 20.9% in average accuracy. Remarkably, without any fine-tuning, METIS's performance matches or exceeds that of supervised, task-specific models. Furthermore, METIS demonstrates exceptional data efficiency and strong generalization, achieving an average AUROC advantage of over 16.0% in few-shot settings and 15.9% in cross-dataset transfer. This work establishes a new paradigm for general-purpose brain signal analysis, paving the way for next-generation neurotechnology.

EEG foundation models such as BIOT, LaBraM, and EEGMamba have achieved remarkable performance in neural signal decoding, but their black-box nature limits clinical trust and neuroscientific validation. We propose a unified attribution framework for interpreting EEG foundation models across heterogeneous architectures. The framework integrates gradient-, perturbation-, and activation-based explanation methods to analyze model behavior in spatial, temporal, and frequency dimensions. Spatially, it identifies critical EEG channels and visualizes their distributions using topographic maps. Temporally, it highlights decision-relevant signal segments through attribution heatmaps. In the frequency domain, it quantifies the contributions of canonical EEG rhythms via spectral perturbation analysis. To assess explanation reliability, we introduce a population-level evaluation combining Area Over the Perturbation Curve (AOPC) and cross-method consistency analysis. The framework further leverages Large Language Models (LLMs) to transform structured attribution outputs into natural-language reports, bridging low-level neural representations and high-level semantic reasoning. Experiments on benchmark datasets, including Mumtaz2016 and TUAB, demonstrate that the generated explanations are consistent with established neurophysiological markers, validating meaningful neural representations while exposing potential dependencies on artifacts and spurious patterns. The proposed framework provides a standardized approach for evaluating the interpretability, reliability, and physiological plausibility of EEG foundation models.

Masked reconstruction is widely used for EEG foundation models, but optimizing reconstruction on low-SNR waveforms does not necessarily produce the most useful latent representation. We introduce MANAS-2, a new EEG foundation model that combines a Raw-Band Hybrid (RBH) masked autoencoder with Constrained Reconstruction (ConRec), a physics-motivated regularizer. RBH jointly reconstructs temporal waveform patches and compact spectral-band targets, while ConRec acts only on the temporal decoder output, penalizing differences in RMS energy between adjacent short windows of the reconstructed waveform. ConRec is intended to shape the encoder by biasing it toward the organization of oscillatory-envelope information. Across seven held-out EEG datasets, adding ConRec to an otherwise identical RBH model increases frozen ridge recovery of six-band spectral power from mean R^2=0.860 to 0.906 and recovery of inter-patch band-energy dynamics from R^2=0.283 to 0.354, while temporal waveform information remains highly recoverable from the frozen latents. Applied to a temporal-only masked autoencoder, ConRec also improves frozen downstream transfer and frequency-dependent latent geometry despite receiving no spectral targets: i.e., the effects of ConRec are architecture-independent. MANAS-2 also outperforms leading EEG Foundation Models on most downstream knowledge-transfer tasks. From the effects of ConRec, we see that a physically motivated constraint imposed through the decoder can make for a more spectrally organized and transferable latent space. MANAS-2 therefore provides a new EEG foundation model built around constrained reconstruction as a mechanism for shaping representation--rather than reconstruction--quality.

Electroencephalography (EEG) is a non-invasive technique for measuring neural activity and has been widely used in neuroscience applications. Recent advances in EEG foundation models have enabled strong performance across diverse neural decoding tasks. However, no single foundation model consistently performs best across datasets or individual EEG instances, while instance-level model selection remains largely unexplored. To address this limitation, we formulate EEG foundation model selection as an instance-level Algorithm Selection (AS) problem. We propose \textbf{EEG-AS}, an instance-level algorithm selection framework that characterizes each EEG instance using inference-available latent EEG embeddings, handcrafted neurophysiological features, and an anchor foundation model. During training, EEG-AS learns to reconstruct unavailable foundation-model behaviors from privileged prediction tokens conditioned on an anchor foundation model, while during inference it estimates these behaviors without executing the entire model portfolio, enabling efficient selection from seven EEG foundation models. Experiments on seven public EEG benchmarks demonstrate that EEG-AS substantially narrows the gap between the Single Best Solver (SBS) and the oracle upper bound for each instance. These results highlight the effectiveness of instance-level AS for adaptive deployment of EEG foundation models.

Motor imagery (MI) electroencephalography (EEG) decoding could support post-stroke rehabilitation, but models developed on healthy cohorts may not transfer reliably to pathological EEG. We evaluated whether Low-Rank Adaptation (LoRA) can efficiently adapt three pretrained EEG foundation models (i.e., LaBraM-base, REVE-base, and REVE-large) for binary left- versus right-hand MI decoding. Frozen-backbone head-only baselines and LoRA adaptation were evaluated using subject-wise five-fold cross-validation on the PhysioNet EEG Motor Movement/Imagery Dataset and a binary subset of the UET175 dataset comprising 30 stroke participants. On EEGMMIDB, LoRA increased accuracy to 0.822 for LaBraM-base and 0.957 for REVE-base. On UET175, all head-only models performed near chance. With LoRA, LaBraM-base remained near chance (0.499$\pm$0.009), whereas REVE-base reached 0.847$\pm$0.194 and outperformed REVE-large (0.806$\pm$0.178), indicating that increased model capacity alone did not improve stroke-domain adaptation. The strongest stroke configuration, REVE-base LoRA, was further evaluated using within-cohort leave-one-subject-out cross-validation (LOOCV), showing 0.952 mean accuracy, but subject-wise accuracy ranged from 0.586 to 1.000, revealing a small low-performing tail. Zero-shot transfer from EEGMMIDB to UET175 remained near chance (0.464$\pm$0.072). These findings show that healthy-benchmark performance does not ensure transfer to stroke EEG. Translation of EEG foundation models to pseudo-online or real-time rehabilitation BCIs should therefore include target-domain adaptation and subject-level assessment of temporal informativeness, spatial sensitivity, and physiological discriminability.

Electroencephalography (EEG) decoding models often generalize poorly across datasets and subjects due to domain shifts in acquisition protocols and individual neurophysiology. We propose EEG-PRIME, a two-stage EEG foundation model for cross-dataset multi-task decoding. EEG-PRIME combines masked pretraining with prototype-aligned instruction tuning to enable instruction-aware and subject-invariant decoding across diverse BCI paradigms. During pretraining, an EEG encoder learns transferable representations through masked reconstruction with frequency-cutoff spectral augmentation. During instruction tuning, EEG-PRIME incorporates task-semantic, dataset-specific, and subject-invariant conditioning. The resulting conditioning signal modulates the Q-Former through Layer-wise Query Modulation, while frozen text embeddings of class labels serve as prototypes for cosine-similarity-based prediction across heterogeneous label spaces. Experiments on sixteen datasets covering motor imagery, emotion recognition, ADHD detection, covert speech, and mental workload show consistent improvements over state-of-the-art baselines and prior EEG foundation models under cross-subject settings. On two additional held-out datasets, EEG-PRIME achieves balanced accuracy comparable to within-session calibration models without target-domain optimization, calibration, or linear probing, demonstrating promising zero-shot transfer capability.

Recent advances in EEG foundation models have demonstrated the potential of large-scale pretraining to enable generalizable neural decoding across subjects, recording environments, and datasets. However, dominant pretraining paradigms face key challenges: masked autoencoding tends to prioritize low-level signal reconstruction over task-relevant semantics, while autoregressive modeling creates a mismatch between continuous neural dynamics and discrete token spaces. To address these challenges, new strategies are needed to effectively align continuous EEG representations with natural-language semantics and enable their integration with large language models. Accordingly, we propose Brain Latent Predictive Model (BLPM), an EEG-language foundation model that reformulates heterogeneous EEG decoding tasks as a continuous semantic embedding prediction problem. BLPM introduces a Continuous EEG Latent Predictive (CELP) encoder that learns transferable representations through latent target prediction. Building on these representations, a Multi-Query Semantic Decomposition (MQSD) module extracts task-relevant information and aligns continuous EEG representations with textual semantics within a shared latent space according to their semantic relationships. Experiments across multiple benchmarks demonstrate consistent generalization performance across diverse tasks, establishing continuous latent semantic prediction as an effective paradigm for EEG-language foundation models.

This work investigates whether Electroencephalograph (EEG) foundation models (EFMs) can be made faster and locally deployable without sacrificing accuracy. EEG foundation models are a major trend, offering strong general-purpose representations. However, their computational burden grows quadratically with input length, hindering deployment on resource-constrained scenario, particularly for real-time clinical monitoring. EEG's low SNR further suggests many of these tokens are redundant and compressible with little accuracy cost. We propose ZIPBrain, a novel redundancy-aware EEG token pooling module that leverages this low-SNR characteristic to reduce token count. Given a token sequence, ZIPBrain partitions tokens into redundant and unique groups, then merges each redundant token with its most similar counterpart in the unique group. Furthermore, ZIPBrain serves as a training-free, plug-and-play module that seamlessly integrates into standard Transformer encoders with negligible computational overhead. Extensive experiments across multiple EEG foundation models show ZIPBrain's strong versatility, achieving 1.3%-10.5% average improvement over baselines, while reducing wall-clock inference time by 32.7% (up to 41.8% with CUDA Graph) compared to the original EEG foundation models.

Brain-computer interfaces (BCIs) have been widely used in motor rehabilitation, disease diagnosis, and other neural engineering scenarios. However, conventional neural signal decoding algorithms often suffer from limited generalizability and high adaptation costs, motivating recent interest in BCI foundation models. Existing approaches still struggle to jointly achieve general transferability, accurate decoding, and efficient downstream adaptation. We present STEAM, a hierarchical transfer framework that reconciles general-purpose representation learning with paradigm-specific specialization in EEG foundation models. The framework is instantiated as a dual-branch spatio-temporal encoder in which a shared soft mixture-of-experts (SSMoE) module aligns the spatial and temporal branches, allowing complementary representations to exchange information through a compact set of soft slots. Across seven downstream datasets and fourteen evaluation settings, STEAM attains the best average rank among the compared methods at a competitive inference cost measured in FLOPs. Building upon the Stage-I general initialization, the hierarchical pre-training strategy further specializes the model to a target paradigm without retraining from scratch, yielding consistent gains in paradigm-specific decoding accuracy.

Increasing EEG pretraining data scale or model capacity does not consistently improve downstream performance. We identify a persistent low-frequency bias in representations learned by diverse EEG foundation models, which remains across dataset scales, model capacities, and pretraining objectives. Our analysis links this bias to the interaction between EEG's $1/f^α$-like spectral structure and neural networks' tendency to preferentially learn low-frequency components. In masked autoencoders, the $\ell_2$ reconstruction objective further amplifies this imbalance: under comparable relative reconstruction errors, high-power low-frequency components contribute disproportionately to the loss. To address this issue, we introduce FAME, a frequency-balanced masked autoencoding framework that reconstructs time--frequency activity in predefined EEG bands from masked EEG inputs. FAME independently standardizes the reconstruction targets within each band and assigns equal weight to all band-specific losses, thereby balancing supervision across the EEG spectrum. Evaluated on 41 downstream tasks in OmniEEG-Bench, FAME learns more spectrally balanced representations and achieves state-of-the-art performance on 24 of them. These results underscore the importance of balanced spectral supervision for learning transferable EEG representations.

Electroencephalography (EEG) foundation models aim to learn reusable representations from large-scale unlabeled recordings. A common pretraining strategy is masked waveform reconstruction, but applying supervision directly to noisy EEG may encourage models to recover predictable background activity, acquisition effects, and artifacts rather than neural structure that transfers across tasks. This raises a central question: what should an EEG foundation model predict to learn transferable representations? We introduce EEG-JEPA a structured latent-prediction framework for EEG foundation modeling. Rather than reconstructing masked voltage samples, a masked context encoder and predictor infer contextual latent states produced by an exponential-moving-average target encoder that observes the complete input. EEG-JEPA organizes target design along three complementary dimensions: target content specifies what representation is predicted, target support specifies where prediction occurs over structured electrode--time regions through Neurotopology-Aware Multi-scale Electrode-Temporal Masking (N-MET), and target depth specifies at which encoder layers supervision is applied. Together, these designs shift EEG pretraining from recovering missing measurements to inferring latent states from structured electrode--time context. We evaluate EEG-JEPA through controlled objective comparisons, frozen multitask transfer, and full fine-tuning. Under the same backbone, pretraining corpus, and training duration, EEG-JEPA improves the 14-task frozen macro balanced accuracy from 40.49% to 50.42% over CBraMod-style masked waveform reconstruction. Multi-source continuation further raises this result to 52.94%, the highest average among the EEG foundation models evaluated on EEG-FM-Bench. Under protocol-matched full fine-tuning, EEG-JEPA also improves the nine-task average balanced accuracy from 68.98% to 70.65%.

Foundation models offer a promising paradigm for Electroencephalography (EEG) analysis, leveraging generalizable representations from vast unlabeled datasets. Yet, Transformer-based architectures face a critical bottleneck: global attention mechanisms couple the attention memory state to the signal duration, causing memory overflow during continuous monitoring. To address this, we introduce S-CEReBrO (Streaming CEReBrO), an evolution of the CEReBrO architecture designed for continuous monitoring. Our novel Windowed Alternating Attention mechanism factorizes attention computation into fixed-size spatiotemporal windows, so that under streaming, only the active window remains resident and the attention state is bounded independently of signal duration. Empirical scaling analysis shows that windowed alternating attention can process signals 100X longer than full self-attention and 3X longer than low-rank linear attention. Compared to low-rank linear attention on long contexts, windowed alternating attention requires 55% of the memory while increasing inference throughput by 2.1X. Pre-trained on >25,000 hours of recordings from >12,000 subjects, S-CEReBrO achieves state-of-the-art performance on 7 of 11 downstream tasks, with up to 60% fewer parameters. This work represents a significant step toward the realization of efficient, generalizable, and continuous EEG monitoring. An accompanying code repository is available. An accompanying code repository is available.

We introduce ZUNA1.1, a 380M-parameter diffusion autoencoder for flexible EEG signal reconstruction. ZUNA1.1 is capable of reconstructing variable length sequences of up to 30s, with an arbitrary number of EEG channels at arbitrary scalp locations, and can reconstruct arbitrary temporal intervals within channels in addition to reconstructing entire channels. We demonstrate that ZUNA1.1 performs at least on par with our earlier ZUNA1 model, while being far more flexible and capable of handling a wide range of reconstruction tasks. ZUNA1.1 continues to substantially outperform standard EEG denoising and reconstruction methods such as spherical spline interpolation, which is ubiquitously deployed in the MNE package. The ZUNA1.1 model is released open source under the permissive Apache 2.0 license.

EEG foundation models pretrained on thousands of hours have shown large gains over task-specific networks for motor imagery, seizure detection, sleep staging, and emotion recognition, but their transfer to speech decoding - arguably the most demanding non-invasive BCI application - remains untested. We present the first systematic benchmark of EEG foundation models against strong convolutional baselines for speech decoding, using two corpora: UGR-MINDVOICE (overt and covert Iberian Spanish) and BCI Competition 2020 Track 3 (imagined speech). We compare two foundation models (LaBraM, EEGMamba) against three established baselines (EEGNet, ShallowFBCSPNet, EEGConformer) under a unified preprocessing and fine-tuning protocol. Large-scale EEG pretraining yields no consistent advantage over a 16K-parameter CNN on speech tasks, indicating that current general-purpose EEG pretraining does not yet transfer to speech production and motivating speech-specific foundation models.

Pretrained EEG foundation models are proposed for clinical decoding, but whether reported gains transfer across populations or survive negative controls is unclear. We benchmark LaBraM, EEGMamba, CBraMod, REVE, LEAD, BENDR, and BIOT on five clinical tasks across four datasets. Primary analyses use frozen linear probes with subject-disjoint LOSO or grouped five-fold validation. Because CAUEEG releases no patient identifiers, it is evaluated at recording level with a patient-disjoint sensitivity. We challenge apparent gains using stronger classical comparators, label permutation, scrambled-label fine-tuning, and random-initialisation controls. In a matched 19-channel CAUEEG evaluation (Normal/MCI/Dementia; N = 1,187 recordings), classical features achieve 0.734 macro-AUROC versus 0.699 for BIOT, 0.669 for CBraMod, and 0.568 for REVE. A patient-disjoint sensitivity retains the classical-over-REVE ordering (0.717 versus 0.565). Dataset identity is decoded from frozen REVE embeddings at or near ceiling across Western-Korean and Western-Western pairs, including after PCA-50 and removal of line-frequency and amplitude-scale information. This establishes dataset membership, not a causal site or population effect. A matched random-initialised encoder exceeds pretrained REVE on CAUEEG (0.659 versus 0.570). On CHB-MIT cross-subject ictal detection (n = 23), REVE reaches 0.793, versus 0.739 for the best enhanced nonlinear comparator, 0.701 for random initialisation, and 0.505 for raw-signal random features. Because preprocessing removes absolute amplitude, this does not establish superiority over every plausible handcrafted baseline. Conclusions change materially after montage matching, patient-overlap checks, stronger comparators, and representation controls. We distill these checks into a reporting protocol for clinical EEG foundation-model studies.

Objective. We tested whether frozen representations from five EEG foundation models support decoding of long-range temporal correlations, measured as the detrended-fluctuation-analysis (DFA) exponent of the alpha-band amplitude envelope. Approach. REVE, LaBraM, BENDR, CBraMod, and BIOT were evaluated in CAUEEG and BrainLat. A common 240 s estimator used 8-13 Hz filtering, DFA over 2-23.8 s, artifact masking, and quality control. One fixed nested-cross-validation readout predicted DFA and a fixed-mode aperiodic exponent. Controls tested pre-pool order sensitivity and aperiodic residualization. Results. CAUEEG included 764 recordings and BrainLat 79. BIOT decoded DFA in CAUEEG (R-squared = 0.232; conditional subject-bootstrap 95 percent interval, 0.121-0.310), and CBraMod was positive but imprecise (R-squared = 0.121; 0.003-0.214). Neither replicated in BrainLat, where all five point estimates were negative. In contrast, CBraMod and BIOT decoded the aperiodic exponent in both cohorts (R-squared = 0.459-0.757). BIOT remained positive after removal of the measured linear aperiodic association in matched CAUEEG data (R-squared = 0.240). The post-hoc order control was batch- and configuration-sensitive. Because chronological EEG epochs are not exchangeable, it was descriptive, not an LRTC-specific test. No revised DFA transfer direction passed source-label permutation testing. Cohort membership was near-ceiling decodable from all five embeddings, but this is not a pure site effect. Significance. CBraMod and BIOT show a replicated, model-specific spectral-temporal dissociation: aperiodic decoding is present in both cohorts, whereas alpha-envelope DFA decoding is cohort-dependent. These findings bound the evaluated readouts; they do not establish representational absence or an architectural cause. Transfer and clinical associations remain exploratory.

Self-supervised foundation models have recently shown strong potential for electroencephalogram (EEG)-based analysis. However, existing approaches struggle to capture the inherently multi-scale temporal structure of EEG signals, where local neural patterns and long-range dependencies jointly encode task-relevant information. This limitation hampers cross-scale representation learning and generalization across diverse downstream tasks. To address this challenge, we propose MSBraM, a Multi-Scale self-supervised Brain foundation Model designed to learn hierarchical EEG representations. MSBraM follows a two-stage pretraining framework. First, a multi-scale neural tokenizer discretizes raw EEG signals into semantic codes at different temporal resolutions via vector-quantized reconstruction. Second, the model is pretrained to predict masked codes using a curriculum multi-scale masking strategy, progressively integrating fine-grained local patterns with global temporal context. We pretrain MSBraM on over 2,400 hours of EEG data and evaluate it across 10 downstream tasks on 12 public datasets. Extensive experiments show that MSBraM achieves superior performance on other state-of-the-art pretrained models, demonstrating strong generalization and transferability. These results indicate that explicitly modeling multi-scale temporal dynamics is critical for effective EEG foundation models.