Explainable Intrusion Detection

Machine-learning intrusion-detection studies commonly emphasize predictive accuracy while treating explanation generation as a computationally free post-processing step. This study jointly evaluates predictive effectiveness, explanation cost, local explanation stability, and selective explanation for binary Internet of Things (IoT) intrusion detection. A leakage-safe CICIoT2023 corpus was constructed using exact 39-feature hashes, non-finite-value handling, exact-feature deduplication, conservative label-collision removal, and deterministic hash-level partitioning. Logistic Regression, Decision Tree, Random Forest, and XGBoost were evaluated on natural and balanced test distributions. TreeSHAP cost was measured, stability was assessed under prediction-preserving perturbations, and validation-calibrated policies were used to allocate explanation workload. XGBoost provided the strongest overall predictive profile, while Random Forest produced the lowest false-positive rate. At 5,000 samples, TreeSHAP required 700.759 s for Random Forest and 1.471 s for XGBoost. Random Forest showed the strongest overall base-level explanation stability; XGBoost retained high rank and directional consistency but showed greater top-feature turnover and attribution-magnitude drift. On the balanced test, about 90% false-negative explanation coverage permitted 28-32% compute savings, while about 95% coverage permitted 15-23% savings. Savings were much smaller under the attack-heavy natural prevalence. These results show that operationally useful explainable IoT intrusion detection depends on predictive quality, explanation cost, local stability, workload prevalence, and selective invocation rather than detection accuracy alone.

Internet of Medical Things (IoMT) networks are hard to protect: devices are heterogeneous, computing resources are scarce, and traffic must be analyzed in real time. We present an intrusion detection system that addresses these constraints through feature selection. A Pearson correlation filter first removes redundant attributes; a hybrid strategy then combines model-based feature importance with SHAP attribution to pick a compact subset, on which we train Random Forest and LightGBM classifiers. SHAP and LIME explain what each retained feature contributes to the decisions. On CIC-IoMT 2024 and CIC-IDS 2017, the method cuts the feature space by up to 88% - from 40 to as few as 5 features - and accuracy and F1-score stay within a few points of models trained on all features. Compact, interpretable detectors of this kind are practical candidates for deployment on resource-limited medical networks.

Digital forensic investigations of network intrusions require analytical outputs that are traceable, reproducible, and court-defensible - requirements existing machine learning pipelines do not satisfy, since they treat original evidence as training data and produce opaque classifications without instance-level justification. This paper presents a forensic-oriented intrusion detection framework resolving both problems simultaneously, integrating synthetic data generation, binary classification, and explainability within a single pipeline governed by ISO/IEC 27037, 27041, 27042, and NIST SP 800-86. The framework operationalises the ISO/IEC 27037 requirement for strict separation between original digital evidence and derived analytical artefacts. Original datasets are treated as immutable, hash-verified artefacts; all training operates on parameterized synthetic derivatives via SDV + CTGAN. XGBoost binary classification provides high-performance detection on tabular network flow data, and SHAP TreeExplainer produces instance-level feature attributions mapping statistical predictions to observable network behaviour for forensic reporting. Train-on-Synthetic, Test-on-Real (TSTR) evaluation on CICIDS2017 achieves F1-macro = 0.96, within cross-validation variance of the real-data baseline (0.97). Kolmogorov-Smirnov testing confirms synthetic privacy preservation (mean |KS| = 0.38) alongside operational utility. Cross-dataset validation on UNSW-NB15 and Kitsune identifies feature space dimensionality as the primary determinant of synthetic training effectiveness, establishing a practical deployment boundary of approximately 30 numeric flow-level features. SHAP attributions for Brute Force, Port Scan, and DoS attacks are consistent across real and synthetic instances, confirming synthetic training preserves forensically relevant attack fingerprints required for expert witness testimony.

Machine learning network intrusion detection systems (IDS) rely on aggregate flow statistics that discard distributional structure, while established entropy measures require raw packet sequences unavailable in pre-aggregated flow datasets. We propose Multi-Level Distributional Entropy (MDE), an analytical framework that derives interpretable entropy features directly from flow-level summary statistics at three levels: within-flow Gaussian differential entropy, cross-directional Jensen-Shannon divergence (JSD), and Transmission Control Protocol (TCP) flag-pattern Shannon entropy, without raw packet access or training data. Across four benchmarks (NSL-KDD, CICIDS-2017, CICIDS-2018, UNSW-NB15) under a leakage-free fold-local pipeline, entropy-only features achieve weighted F1 of 0.708-0.989, matching conventional features without degrading performance. Full operational metric reporting then exposes failure modes that aggregate F1 conceals. On CICIDS-2018, F1=0.74 hides a detection rate (DR) of 0.48, and on held-out attack families F1 exceeds 0.998 while DR falls to zero. Under temporal shift, a pseudo-live replay of 703K flows reveals a threshold-ranking divergence in which score ranking is preserved (AUC=0.87) but fixed thresholds collapse (DR=0.082) and recalibration offers no recovery. SHapley Additive exPlanations (SHAP) fold-stability analysis (Spearman rho=0.80-0.95) confirms that entropy attributions are reproducible and domain-coherent across heterogeneous environments.

The detection of previously unseen network attacks remains a major challenge for intrusion detection systems. Although supervised learning methods often perform well on known attack classes, they are limited when new attack types are not represented in the training data. Unsupervised methods are more suitable for detecting zero-day attacks, as they do not require labelled attack samples, but they often suffer from high false positive rates, which limits their real-world usefulness. This paper presents UNAD+, an enhanced framework for unknown network attack detection derived from the previously proposed Unknown Network Attack Detector (UNAD). UNAD+ combines a benign-only unsupervised ensemble with Weighted Majority Voting (WMV), a supervised refinement stage trained on pseudo-labelled detections, and a post hoc explainability layer that provides both local and global explanations. The framework was evaluated on the CICIDS2017 and NSL-KDD benchmark datasets. The results show that UNAD+ improves on the original UNAD framework, achieving F1-scores above 98% across the benchmark datasets while significantly reducing false positives and enhancing transparency and deployment suitability through integrated explainability.

During thDuring the last few years, the term Mechanistic Interpretability, a specific area, under the umbrella of explainable artificial intelligence (XAI), has been introduced, to explain the decisions made by complex machine learning (ML) models in critical systems like UAV intrusion detection systems (UAVIDS). In this paper, we apply best-practices for data pre-processing and examine a wide range of tree-ensembles, deep neural networks, hybrid stacking models and the latest ensemble neural networks to detect intrusions in UAV, with stratified 10-fold cross validation. With our top-performing model, XGBoost, we proceed to Shapley Additive explanations (SHAP), to analyze the global and local feature importances and understand which features, each attack targets, to mimic normal traffic and where the misclassifications occur. Furthermore a distribution analysis follows, by visually comparing violin plots and the curves of kernel density estimations. With the Westfall-Young permutation test for multiple comparisons, the Bandwidth optimization of the KDEs and the selection of Jensen-Shannon Distance for the test, we discover the true causes of false predictions, observed in Wormhole and Blackhole attacks in UAVIDS-2025. The findings provide robust, reliable and explainable models for UAV intrusion detection, along with statistical insights, which capture and clarify the masked nature of the attacks, regarding the challenge of Density Support Intersection, between these attacks, in this dataset.

Machine learning-based intrusion detection requires complex models to capture patterns in high-dimensional, noisy, and class-imbalanced raw network traffic, yet deploying such models remains impractical on resource-constrained devices with limited processing power and memory. In this paper, we present a correlation-aware divide-and-conquer learning technique that decomposes a complex learning problem into smaller, more manageable subproblems. This enables lightweight models as simple as decision trees to be trained on focused subtasks, yielding up to 43.3% higher local accuracy and up to 257 times reduction in model size on real-world network intrusion detection datasets, while also improving adversarial robustness and explainability.

Software-Defined Networking (SDN) is another technology that has been developing in the last few years as a relevant technique to improve network programmability and administration. Nonetheless, its centralized design presents a major security issue, which requires effective intrusion detection systems. The SDN-specific machine learning-based intrusion detection system described in this paper is innovative because it is trained and tested on the InSDN dataset which models attack scenarios and realistic traffic patterns in SDN. Our approach incorporates a comprehensive preprocessing pipeline, feature selection via Mutual Information, and a novel ensemble learning model, SDNGuardStack, which combines multiple base learners to enhance detection accuracy and efficiency. In addition, we include explainable AI methods, including SHAP to add transparency to model predictions, which helps security analysts respond to incidents. The experiments prove that SDNGuard-Stack has an accuracy rate of 99.98% and a Cohen Kappa of 0.9998, surpassing other models, and at the same time being interpretable and practically executable. It is interesting to see such features like Flow ID, Bwd Header Len, and Src Port as the most important factors in the model predictions. The work is a step towards closing the gap between performance intrusion detection and realistic deployment in SDN, which will lead to the creation of secure and resilient network infrastructures.

Anomaly-based Intrusion Detection Systems (IDSs) ensure protection against malicious attacks on networked systems. While deep learning-based IDSs achieve effective performance, their limited trustworthiness due to black-box architectures remains a critical constraint. Despite existing explainable techniques offering insight into the alarms raised by IDSs, they lack process-based explanations grounded in packet-level sequencing analysis. In this paper, we propose a method that employs process mining techniques to enhance anomaly-based IDSs by providing process-based alarm severity ratings and explanations for alerts. Our method prioritizes critical alerts and maintains visibility into network behavior, while minimizing disruption by allowing misclassified benign traffic to pass. We apply the method to the publicly available USB-IDS-TC dataset, which includes anomalous traffic affected by different variants of the Slowloris DoS attack. Results show that our method is able to discriminate between low- to very-high-severity alarms while preserving up to 99.94% recall and 99.99% precision, effectively discarding false positives while providing different degrees of severity for the true positives.

Network Intrusion Detection Systems (NIDS) face important limitations. Signature-based methods are effective for known attack patterns, but they struggle to detect zero-day attacks and often miss modified variants of previously known attacks, while many machine learning approaches offer limited interpretability. These challenges become even more severe in IoT environments because of resource constraints and heterogeneous protocols. To address these issues, we propose MA-IDS, a Multi-Agent Intrusion Detection System that combines Large Language Models (LLMs) with Retrieval Augmented Generation (RAG) for reasoning-driven intrusion detection. The proposed framework grounds LLM reasoning through a persistent, self-building Experience Library. Two specialized agents collaborate through a FAISS-based vector database: a Traffic Classification Agent that retrieves past error rules before each inference, and an Error Analysis Agent that converts misclassifications into human-readable detection rules stored for future retrieval, enabling continual learning through external knowledge accumulation, without modifying the underlying language model. Evaluated on NF-BoT-IoT and NF-ToN-IoT benchmark datasets, MA-IDS achieves Macro F1-Scores of 89.75% and 85.22%, improving over zero-shot baselines of 17% and 4.96% by more than 72 and 80 percentage points. These results are competitive with SVM while providing rule-level explanations for every classification decision, demonstrating that retrieval-augmented reasoning offers a principled path toward explainable, self-improving intrusion detection for IoT networks.

Software-Defined Networking (SDN) improves network flexibility but also increases the need for reliable and interpretable intrusion detection. Large Language Models (LLMs) have recently been explored for cybersecurity tasks due to their strong representation learning capabilities; however, their lack of transparency limits their practical adoption in security-critical environments. Understanding how LLMs make decisions is therefore essential. This paper presents an attribution-driven analysis of encoder-based LLMs for network intrusion detection using flow-level traffic features. Attribution analysis demonstrates that model decisions are driven by meaningful traffic behavior patterns, improving transparency and trust in transformer-based SDN intrusion detection. These patterns align with established intrusion detection principles, indicating that LLMs learn attack behavior from traffic dynamics. This work demonstrates the value of attribution methods for validating and trusting LLM-based security analysis.

The rapid adoption of the Internet of Medical Things (IoMT) is transforming healthcare by enabling seamless connectivity among medical devices, systems, and services. However, it also introduces serious cybersecurity and patient safety concerns as attackers increasingly exploit new methods and emerging vulnerabilities to infiltrate IoMT networks. This paper proposes a novel Tsetlin Machine (TM)-based Intrusion Detection System (IDS) for detecting a wide range of cyberattacks targeting IoMT networks. The TM is a rule-based and interpretable machine learning (ML) approach that models attack patterns using propositional logic. Extensive experiments conducted on the CICIoMT-2024 dataset, which includes multiple IoMT protocols and cyberattack types, demonstrate that the proposed TM-based IDS outperforms traditional ML classifiers. The proposed model achieves an accuracy of 99.5% in binary classification and 90.7% in multi-class classification, surpassing existing state-of-the-art approaches. Moreover, to enhance model trust and interpretability, the proposed TM-based model presents class-wise vote scores and clause activation heatmaps, providing clear insights into the most influential clauses and the dominant class contributing to the final model decision.

As the Internet of Things (IoT) continues to expand across critical infrastructure, smart environments, and consumer devices, securing them against cyber threats has become increasingly vital. Traditional intrusion detection models often treat IoT threats as binary classification problems or rely on opaque models, thereby limiting trust. This work studies multiclass threat attribution in IoT environments using the CICIoT2023 dataset, grouping over 30 attack variants into 8 semantically meaningful classes. We utilize a combination of a gradient boosting model and SHAP (SHapley Additive exPlanations) to deliver both global and class-specific explanations, enabling detailed insight into the features driving each attack classification. The results show that the model distinguishes distinct behavioral signatures of the attacks using flow timing, packet size uniformity, TCP flag dynamics, and statistical variance. Additional analysis that exposes both feature attribution and the decision trajectory per class further validates these observed patterns. Our findings contribute to the development of more accurate and explainable intrusion detection systems, bridging the gap between high-performance machine learning and the need for trust and accountability in AI-driven cybersecurity for IoT environments.

Intrusion detection in IoT and industrial networks requires models that can detect rare attacks at low false-positive rates while remaining reliable under evolving traffic and limited labels. Existing IDS solutions often report strong in-distribution accuracy, but they may degrade when evaluated on future traffic, unseen (zero-day) attack families, or adversarial feature manipulations, and many systems provide limited evidence to support analyst triage. To address these gaps, we propose ThreatFormer- IDS, a Transformer-based sequence modeling framework that converts flow records into time-ordered windows and learns contextual representations for robust intrusion screening. The method combines (i) weighted supervised learning for imbalanced detection, (ii) masked self-supervised learning to improve representation stability under drift and sparse labels, (iii) PGDbased adversarial training with scale-normalized perturbations to strengthen resilience against feature-level evasion, and (iv) Integrated Gradients attribution to highlight influential time steps and features for each alert. On the ToN IoT benchmark with chronological evaluation, ThreatFormer-IDS achieves AUCROC 0.994, AUC-PR 0.956, and Recall@1%FPR 0.910, outperforming strong tree-based and sequence baselines. Under a zero-day protocol with held-out attack families, it maintains superior generalization (AUC-PR 0.721, Recall@1%FPR 0.783). Robustness tests further show slower degradation in AUCPR as the adversarial budget increases, confirming improved stability under bounded perturbations. Overall, ThreatFormer- IDS provides a unified, deployment-oriented IDS pipeline that balances detection quality, zero-day behavior, robustness, and explainability.