Regulatory Networks

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1 papers in the last 28 days · 0.0% of indexed attention

Twelve weeks of publication activity for this topic as it is defined today.

Also in Transcriptomics

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TranscriptomicsSingle-Cell RnaGenome-Wide Association StudyGenes

25 papers

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  1. Orchestra: Corroboration-Based Regulatory Candidate Discovery via Composed Bioinformatics MCP Agents

    Aug 27, 2026Jose A. BirdRegulatory NetworksThe Cancer Genome Atlas Datasets

  2. Control-Anchored Residual Flow Matching Conditioned on Gene Geometry for Virtual Cell Perturbation Modeling

    Aug 7, 2026Quanquan Li, Yihe Chi, Liuyang Song +10Single-Cell Perturbation PredictionTranscriptomics

  3. CASCADE: An Agentic Regulatory Network Framework for Patient-Data-Validated Downstream Perturbation Prediction

    Aug 5, 2026Jose A. BirdThe Cancer Genome Atlas DatasetsTranscriptomics

  4. Continuous surrogates versus threshold Boolean networks for modeling Arabidopsis ISR gene regulation

    Jul 25, 2026Gonzalo A. RuzRegulatory NetworksSurrogate Modeling

  5. Amortized Bayesian Causal Discovery of Extended Factor Graphs

    Jul 24, 2026Yichen Gu, Yuxuan Song, Weizhou Qian +2Causal GraphCausal Discovery

  6. BRIDGE: Bottleneck-Aware Regulator-Set Inference and Diagnosis for Cooperative Gene Regulatory Recovery

    Jul 21, 2026Maryam Rahimimovassagh, Clayton Thomas Barham, Ivan Garibay +1Regulatory NetworksRegulation

  7. Deep and Probabilistic Models for Gene Regulatory Network Inference

    Jul 17, 2026Claudia Skok GibbsRegulatory NetworksGenome-Wide Association Study

  8. CoDiffGRN: Rethinking Gene Regulatory Network Inference via the BEELINE-KGC Benchmark and Co-evolutionary Discrete Diffusion

    Jul 14, 2026Jiaze Song, Runhao Zhao, Minghao Xu +2Regulatory NetworksTranscriptomics

  9. Deep Gaussian Processes on Directed Acyclic Graphs

    Jul 10, 2026Federico L. Perlino, Oliver Hamelijnck, Adam M. Johansen +1Directed Acyclic GraphGaussian Process

  10. Causal ASCEND: Scalable Two-tier Causal Discovery on High Dimensional Multi-omics Data

    Jul 5, 2026Stephen Asiedu, David WatsonCausal DiscoveryRegulatory Networks

  11. DevoTG: Temporal Graph Neural Networks for Modeling C. elegans Developmental Connectomics

    Jun 20, 2026Jayadratha Gayen, Bradly AliceaTemporal Graph Neural NetworksFunctional Networks

  12. CisTransCell: Single-Cell Perturbation Prediction via Gene Function, Regulatory Control, and Cellular Context

    Jun 10, 2026Wei Zhang, Xun Jiang, Yuesi Xi +1Single-Cell Perturbation PredictionTranscriptomics

  13. Biological Reasoning-Informed Regression for Interpretable Regulatory DNA Activity Prediction

    Jun 6, 2026Yi Duan, Zhao Yang, Jiwei Zhu +3Regulatory NetworksBiological

  14. The Dark Regulome: Disentangling Predictability from Regulation in Genomic Foundation Models

    Jun 5, 2026Chahat Baranwal, Aaditya Baranwal, Lakshya Nitin TandonRegulatory NetworksTranscriptomics

  15. BRIDGE: Biological Evidence Refinement and Heterogeneous Dynamic Gating for Gene Regulatory Networks

    Jun 2, 2026Ziyang Dong, Shanwen Tan, Hengchuang Yin +5Regulatory NetworksSingle-Cell Rna

  16. Prior-Guided Multi-Omic Transformers for Single-Cell Gene Regulatory Network Inference

    May 30, 2026Tianyang Xu, Tianci Liu, Niraj Rayamajhi +4Regulatory NetworksGenes

  17. Applications of temporal graph learning for predicting the dynamics of biological systems

    May 27, 2026Manuel Dileo, Andrea SottorivaRegulatory NetworksTemporal Graph Neural Networks

  18. Evolving Causal Regulatory Networks (ECR-Net)

    May 24, 2026Govind Vallabhasseri Binish, Abdhul Ahadh, Rano Roy Kavanal +1Causal DiscoveryRegulatory Networks

  19. WTKO-CNN: Deep Learning Reveals Sequence Motifs Distinguishing Wild-Type and Knockout ATAC-seq Peaks

    May 21, 2026Lopamudra DeyRegulatory NetworksMotif

  20. SCOPE: Siamese Contrastive Operon Pair Embeddings for Functional Sequence Representation and Classification

    May 10, 2026Akarsh Gupta, Kenneth Rodrigues, Sagnik ChatterjeeRegulatory NetworksSequence

  21. When Does Gene Regulatory Network Inference Break? A Controlled Diagnostic Study of Causal and Correlational Methods on Single-Cell Data

    May 6, 2026Miguel Fernandez-de-Retana, Ruben Sanchez-Corcuera, Unai Zulaika +2Regulatory NetworksSingle-Cell Rna

  22. Partially Observed Structural Causal Models

    May 5, 2026Turan Orujlu, Jordan Matelsky, Martin V. Butz +2Structural Causal ModelPartial Observability

  23. Towards Universal Gene Regulatory Network Inference: Unlocking Generalizable Regulatory Knowledge in Single-cell Foundation Models

    May 1, 2026Jiaxin Qi, Hang Li, Yan Cui +2Regulatory NetworksSingle-Cell Rna

  24. Learning biophysical models of gene regulation with probability flow matching

    Apr 27, 2026Suryanarayana Maddu, Victor Chardès, Michael J. ShelleyRegulatory NetworksConditional Flow Matching

  25. Central Dogma Transformer II: An AI Microscope for Understanding Cellular Regulatory Mechanisms

    Feb 9, 2026Nobuyuki OtaRegulatory NetworksRegulation