Generative Modeling

Projection-conditioned novel view synthesis (NVS) warps an explicit 3D reconstruction of the input view into the target camera and conditions a generator on the warped rendering. This works well for small viewpoint changes but degrades sharply under large orbital motion: the warp becomes sparse around the orbited object, where hidden surfaces dominate the new view and mirror-like artifacts emerge, causing the generator to lose both pixel content and the implicit camera cue carried by the warp. We introduce WarpHammer, a training-free framework that resolves this failure mode by augmenting the warped scene with an explicit 3D reconstruction of the object obtained from a native 3D generative prior (e.g., SAM3D). The reconstructed object adds missing foreground surfaces and occludes background points that should no longer be visible, restoring both appearance and camera cues without fine-tuning the base model. The same explicit object representation further unlocks a capability current NVS pipelines do not support: incorporating auxiliary views of the object from sources outside the target scene, for example, a casual snapshot of a car paired with a manufacturer studio shot of the same model. We process the reference and auxiliary images jointly with a pretrained multi-view geometry foundation model, which predicts a unified point cloud that we fuse into the 3D object reconstruction. This yields substantially more faithful geometry than single-image reconstruction, without requiring user-provided camera poses for the auxiliary views. On five benchmarks, WarpHammer produces stable novel views at viewpoint deviations where strong baselines collapse, and is the first scene-level NVS method that can naturally fuse auxiliary, pose-unknown object views from an external source.

Mapping a chemical reaction network, the graph of minima and transition states (TS) and the elementary reactions connecting them, is the natural language of chemistry, from catalysis to combustion to the origin of life. Constructing such a reaction network for a given chemistry has been impractical: it requires finding and characterizing tens of thousands of TS, a task for which traditional methods such as density functional theory (DFT) are typically prohibitively slow and require reactant and product as input. We introduce ReactionAtlas, which builds a reaction network $\textit{ab origine}$ from a handful of seed molecules and without hand-crafted rules. Specifically, our machine-learned generative model proposes reactions from kinetically sampled candidate compounds and a DFT-trained machine learned force field (MLFF) filters them to valid TS, the resulting products of which enter the search as new seeds. Starting from eight pre-biotic seeds (CH$_2$O, H$_2$O, OH$^-$, H$_3$O$^+$, CO$_2$, H$_2$CO$_3$, HCO$_3^-$, H), ReactionAtlas discovers $\sim$47,000 reactions among $\sim$12,000 compounds. The MLFF TSs match the PBE0 references within 0.5 Å RMSD in 85% of the cases and can be easily brought to the PBE0 level. Thus, ReactionAtlas maps small carbohydrate chemistry up to C$_4$H$_8$O$_4$ at unprecedented scale and accuracy, including charge and stereo information. It enables novel insights into many well-studied reaction paths, including the formose cycle, which we highlight for its centrality to the chemical origins of life. Notably, our framework also allows establishing alternative reaction pathways for formose chemistry.

Many modern generative modeling methods, including diffusion models, normalizing flows, and flow matching, estimate transport maps or plans between distributions without explicitly targeting an optimal transport (OT) map. In applications like generative modeling, the transport cost itself is irrelevant, and this makes it natural to target maps which are more tractable from either a statistical or computational standpoint. In this short note, we formalize the task of estimating any valid transport map in a rigorous minimax framework. One consequence of this framing is that it yields sample complexity lower bounds for any method whose learned object is evaluated as a transport map or plan, including flow matching and diffusion-based generative models, in settings where direct analysis would be challenging due to the analytic complexity of the methods and their target maps. We observe that, under standard, though strong, stability assumptions from the OT literature, estimating any valid transport map is statistically as hard as estimating the OT map. We complement these results with some examples showing that when these stability assumptions fail, alternative transport maps can be learned substantially more accurately than the OT map. Our minimax framing provides a rigorous foundation for understanding the statistical limits of modern transport-based generative methods and clarifies when targeting sub-optimal maps can provide real statistical advantages.

Aligning generative flow models on continuous spaces via online reinforcement learning is constrained by intractable trajectory likelihoods. Existing density-approximated policy gradient methods rely on stochastic SDE samplers to construct tractable transition kernels, which introduce training-inference inconsistencies and necessitates Classifier-Free Guidance (CFG). While implicit frameworks such as DiffusionNFT directly optimize forward-process velocity fields, its heuristic fixed-magnitude corrections prevent optimization strength from relative intra-group quality. We propose \textit{Flow Advantage-Weighted Rectification} (\textbf{FlowAWR}), a paradigm that recasts continuous generative policy optimization as supervised regression toward a theoretically optimal velocity field. Starting from the optimal policy of a KL-constrained reward maximization, FlowAWR derives the optimal velocity field that admits a magnitude-aware, advantage-weighted rectification form, yielding SDE-free optimization and CFG-free generation. In comparative evaluations on SD3.5-Medium, FlowAWR achieves improved alignment performance alongside a 2$\times$ to 5$\times$ convergence acceleration over DiffusionNFT (e.g., reaching a 24.12 PickScore in 1.2k steps, versus 23.82 in 2.0k steps for DiffusionNFT and 23.50 in $>$4k steps for FlowGRPO). Under multi-reward constraints, FlowAWR sustains generation quality, satisfying structural rules while maintaining stable out-of-domain performance.

Deterministic few-step generation succeeds on continuous image latents but collapses to incoherent text on continuous text latents, and we show the cause is geometric rather than a training or scaling deficiency: a smooth, regularity-limited deterministic map cannot resolve a discrete branch choice before a sharp categorical readout, so few-step failure is governed by decoder sharpness, not transport accuracy. In the overlapping regime of real text autoencoders, we prove (Theorem 3) that the posterior-mean terminal step flips tokens at the rate of the latent mass in an $O(s(t))$ tube around decision boundaries. Two diagnostics, DABI (readout sharpness) and CCI (categorical commitment), measured on published checkpoints show that four independently built continuous-text decoders amplify a boundary-aligned perturbation far beyond a norm-matched isotropic one (DABI from $5\times10^{2}$ to $>10^{5}$), while image decoders have DABI $\approx 1$. Two mechanisms escape the continuous bound: categorical commitment (autoregressive decoders succeed despite sharper readouts) and stochastic re-injection (deterministic ODE at $K=4$ gives PPL 294 versus SDE 50 on the same model). In the idealized separated regime we prove matching sharp transport laws, including a dimension phase diagram: the deterministic stiffness needed to separate $M$ modes grows as $Θ(\sqrt{\log M})$ once the latent dimension is $Ω(\log M)$ (and as $M^{1/n}$ in fixed dimension), with a depth-$B$ hierarchy giving a $\sqrt{B}$-smaller per-step peak (Theorems 5-7); a coarea identity links these to the overlapping tube (Theorem 17). The result is an accuracy-depth-stiffness tradeoff: within the deterministic-continuous class the cost is irreducible, and both escapes step outside it.

These notes recapitulate the high level mathematical principles behind different techniques for generative modeling. I show the connections between optimal transport and standard techniques such as Schr{ö}dinger bridge and flow matching.

Score distillation turns a pretrained 2D diffusion model into a 3D generator, but the per-step gradient is estimated from a single random view: this one-sample estimate has high variance (different views of the same partial scene disagree) and is blind to global shape consistency. Existing multi-view approaches address this by retraining the diffusion prior on multi-view data; this improves consistency but conflates the sampling contribution with the quality of the retrained prior. We instead isolate the sampling axis, leaving the prior frozen. We introduce Multi-View Aggregated Score Distillation (MV-SDI), a training-free sampler that replaces the single-view per-step gradient with an average over K views at a fixed UNet-call budget. Averaging K views lowers the per-step gradient variance toward 1/K of its single-view value. Drawing the K views as antithetic antipodal pairs adds no further variance reduction (measured antipodal correlation rho approximately 0) but stratifies angular coverage (every step covers both hemispheres) removing the same-hemisphere clustering of independent sampling. At a fixed 10,000-UNet-call budget on the 43-prompt SDI benchmark, K=2 halves the optimization steps and raises CLIP R-Precision from 74.8% to 83.8% and CLIP score from 0.297 to 0.312 over the single-view SDI baseline, with consistent gains on HPSv2 and ImageReward and a 0.0% divergence rate. K=4 gives a fourfold step reduction at R-Precision 86.9% and CLIP 0.307. The gains concentrate on hard prompts where single-view distillation collapses, at a measured cost in CLIP-IQA. MV-SDI is drop-in for gradient-based score-distillation pipelines, including Score Distillation via Inversion and plain SDS, and requires no retraining and no multi-view data. Code is available at: https://github.com/marianlupascu/MV-SDI

Recent progress in flow-based generative modeling has led to models that output high-quality samples while using only a small number of function evaluations. However, at present, there is a lack of similar advances in estimating the model likelihood. In particular, most existing methods either rely on restrictive architectures that enable exact calculations, or use stochastic approximations such as Hutchinson's trace estimator that introduce substantial variance. In this work, we introduce SCAlable LikeLihood distillation of flOw maPs (SCALLOP). SCALLOP builds on the recently proposed F2D2, a likelihood flow map model that can generate samples and their densities in a small number of function evaluations. While F2D2 uses Hutchinson's estimator during training, we introduce an alternative and more scalable likelihood distillation objective that is Hutchinson-free and admits a vectorized formulation. Empirically, we demonstrate the effectiveness of SCALLOP as a Boltzmann generator in molecular science, and further validate its benefit on image datasets. SCALLOP significantly reduces both training variance and training time while consistently improving performance compared to F2D2, and is competitive with the state-of-the-art while achieving up to 10x inference speedup over the fastest baseline.

We present a first study of a diffusion-based approach to accelerated sampling of the $N_f = 2$ lattice Schwinger model. Our work is inspired by recent and growing successes in developing such generative models for ensemble generation in LFT to overcome the well-known critical slowing down problem. We train a U(1)-equivariant score-based generative model to sample gauge link configurations from the marginal Schwinger model. By computing model likelihoods, we obtain unbiased estimates for observables that closely match those produced by MCMC simulations. We also demonstrate improvement over HMC as measured qualitatively by a reduction in topological freezing near critical parameters.

State-of-the-art flow models generate stunning images from text or image prompts. However, they suffer from diversity collapse when generating multiple samples under the same conditioning. Existing methods address this issue via either latent guidance, which has limited effectiveness, or sample selection, which relies on external reward models that incur significant inference-time overhead. In this work, we introduce an efficient, training-free self-guidance mechanism to mitigate diversity collapse without requiring additional reward models. Specifically, we disperse the internal features of the flow model during batch generation with feature self-guidance. Further, to keep the features close to the manifold, we introduce a manifold regularization step that projects these dispersed features back onto the data manifold, ensuring diverse generation without sacrificing alignment with the input conditions. Our method integrates seamlessly as a plug-and-play module into pretrained flow models, adding only a marginal inference cost. Experiments demonstrate significant improvements in diversity while preserving fidelity across several conditional flow models, including multi-step and few-step text-to-image, depth-to-image, and reference image generation.

Analog hardware platforms such as coupled oscillators and Analog Ising Machines naturally solve differential equations at a fraction of the energy cost of digital computation, making them attractive for low-power generative modeling, yet a fundamental mismatch exists: modern generative models assume flexible, software-defined dynamics, whereas analog hardware imposes fixed, physics-determined differential equations with limited approximation capacity. This paper introduces Analog Interaction Systems (AIS), a unified framework for hardware-implementable dynamical systems, and empirically characterizes their expressivity gap relative to neural network baselines. Two hardware-compatible mechanisms are proposed to narrow this gap - time-varying piecewise parameters and hidden physical states - and a Wasserstein GAN training procedure is developed to enable training of these models without requiring them to follow a specific trajectory. We characterize how area and power scale with connection density and precision, showing that sparse connectivity and low-bit-width quantized parameters are necessary for practical implementation, and estimate an energy cost of 23uJ per generated image for the chosen architecture, representing a 2-orders-of-magnitude improvement over digital baselines. On MNIST and Fashion-MNIST, our oscillator-based AIS achieves FID scores of 27.6 and 80.8, outperforming the best prior hardware-implementable analog generative models by 3-4x with a 4-bit sparse architecture.

Triangulations, i.e., well-structured decompositions of geometric objects into triangle-like pieces, are central objects in many domains of mathematics and physics. In particular, fine, regular, and star triangulations (FRSTs) of 4D reflexive polytopes give rise to smooth Calabi-Yau threefolds, which are of significant interest in string theory. However, the high dimensionality and combinatorial complexity of triangulations make them particularly challenging to model with classical numerical methods or machine learning. In this work, we show that transformers, equipped with an appropriate encoding scheme, can be effectively trained to representatively generate new FRSTs across a range of polytope sizes. Moreover, these models can also self-improve through retraining on their own output. This opens the door to both concrete applications to the classification of Calabi-Yau manifolds and further research in physics, combinatorics and algebraic geometry.

Image generative models are trained on massive, largely uncurated internet-scale datasets that contain undesirable visual concepts. Efficiently removing such concepts from the model generations without degrading the quality of output images remains challenging. We introduce a novel concept removal method for frontier diffusion and image autoregressive models, such as SD3.5, Flux, and Infinity. Our intervention replaces the internal bottleneck layer present in all these modern models with a transcoder that is trained to replicate the original layer while structuring it into distinct activation features. This in-place substitution creates an integrated filter through which concept-specific signals can be selectively disabled while preserving the rest of the model's behavior. Since the intervention modifies the model backbone rather than attaching an external component, it remains persistent under white-box access. Empirically, the approach achieves state-of-the-art concept removal performance across modern diffusion and autoregressive models, maintains visual generation quality, provides robustness against adversarial prompts, and supports sequential removal of diverse concepts. This positions our method as a practical approach for concept removal in frontier image generative models.

Existing 3D vehicle generation methods often suffer from low geometric fidelity and blurry textures, hindering their downstream applications. While recent works adopt multi-view diffusion models for high-fidelity texture, they are often constrained by fixed viewpoints, limited resolution, and a reliance on costly fine-tuning to achieve cross-view consistency. In this paper, we propose HiFiVe, a training-free framework for high-fidelity vehicle modeling through joint texture and geometry enhancement by imposing 3D geometric constraints to anchor 2D generative priors. Specifically, we propose an auto-regressive texture refinement pipeline that progressively synthesizes high-resolution textures from arbitrary viewpoints. To ensure cross-view consistency, the coarse geometry serves as a synchronization prior, conditioning each generation step on previously synthesized frames via depth-based warping and multi-view texture fusion. Moreover, the inherent symmetry of vehicles is exploited to mitigate error accumulation. Finally, high-frequency surface details are recovered by refining the mesh geometry using normal maps estimated from the enhanced textures. Extensive experiments on synthetic and real-world vehicle datasets demonstrate that our method significantly improves both geometric detail and texture quality compared to state-of-the-art baselines. Project page: https://honglixiao.github.io/hifive.github.io/.

Ultrasound is a non-invasive, real-time, and cost-effective imaging technique widely used in clinical diagnosis. However, its diagnostic efficacy is often compromised by inherent speckle noise that degrades image quality and obscures underlying anatomical structures. Existing speckle reduction methods tend to over-smooth tissue boundaries and generalize poorly to heterogeneous noise levels. To address these limitations, we propose a Noise-Aware Boundary-Enhanced Generative Learning (NBGL) framework for ultrasound speckle reduction, which simultaneously preserves annotated anatomical boundaries and adapts to varying noise levels. The NBGL framework consists of a speckle reduction branch and a boundary enhancement branch. The former leverages generative learning to suppress speckle noise, while the latter learns boundary-sensitive representations to preserve target anatomical structures. Furthermore, a noise-aware interaction weight generation (NIWG) module estimates the speckle noise level via 3D Laplacian filtering and a median absolute deviation estimator, and translates it into an adaptive interaction weight. This weight is incorporated into a weighted feature-wise linear modulation (wFiLM) module to adaptively modulate cross-branch feature coupling, thereby improving robustness to varying noise levels. Extensive evaluations on 141 3D transvaginal ultrasound volumes demonstrate that NBGL consistently outperforms state-of-the-art methods in speckle reduction and structural preservation across six noise levels, while maintaining consistency with annotated anatomical boundaries.

Modeling and sampling from the underlying distribution of asynchronous event sequences are crucial in various real-world applications, including social networks, medical diagnosis, and financial transactions. Existing autoregressive methods suffer from error accumulation during multi-step generation, while non-autoregressive diffusion methods are typically limited to fixed-length output sequences. In this paper, we propose Latent Block-Diffusion Temporal Point Processes (LBDTPP), a novel semi-autoregressive TPP framework that introduces a latent block diffusion mechanism for high-quality and variable-length event sequence generation. The core idea is to define an autoregressive probability distribution over event blocks in latent space and perform Gaussian diffusion within each block. By sequentially generating blocks while simultaneously sampling events in each block, LBDTPP preserves the length flexibility of autoregressive TPPs and inherits the parallel high-quality generation capability of diffusion models. Theoretically, we derive Wasserstein error bounds showing that, under suitable local approximation and prefix-stability assumptions, block-wise generation can reduce error accumulation compared with event-wise autoregressive generation. Extensive experiments on six real-world benchmark datasets demonstrate that LBDTPP outperforms state-of-the-art TPP baselines in both unconditional and conditional generation tasks. Further empirical analyses verify the benefits of latent-space diffusion and block-wise generation, and reveal the trade-off between generation quality and block size. Our code is available at https://github.com/Zh-Shuai/LBDTPP.

Microwave satellite imagery plays a crucial role in monitoring tropical cyclone precipitation and intensity worldwide, but suffers from long revisit times, potentially missing rapid storm evolution phases. While this raises the need for an interpolation method, it is made challenging by the high level of heterogeneity of microwave data coming from different instruments. In this work, we introduce the first generative model that can be applied to multiple geospatial sources that change across samples, occur at irregular time intervals, are misaligned geographically, and come from instruments with varying characteristics. We apply this model to the case of spatio-temporal interpolation of tropical cyclone microwave images from other microwave and infrared instruments. We train using a self-supervised task in which a random source is masked and reconstructed, and show that it leads to a significant decrease in Continuous Ranked Probability Score over supervised training. We show a further improvement by combining infrared and microwave data compared to microwave only. Using these improvements, the generative model produces an ensemble mean on par with that of a deterministic model, while generating a power spectrum significantly closer to that of true observations. To the best of our knowledge, this is the first generative model that interpolates microwave images of cyclones by combining multiple microwave instruments and infrared observations at irregular time intervals.

Since 2023, computer scientists have warned against model collapse -- the contamination of training sets with AI-generated outputs that progressively degrade model performance. Exemplifying a positive-feedback-driven failure, it produces effects such as word repetition or pixel noise, ultimately leading to a loss of meaning and coherence -- at least from an engineering standpoint. From a creative one, however, collapse is not merely a breakdown: it also functions as a recursive mirror that recalls early analog video feedback experiments, raising once again the question of what happens when a system turns inward and sees itself. In such cases, so-called machine vision no longer transmits the world (as in tele-vision) but increasingly generates worlds from within. Drawing on media archaeology through case studies of both historical video synthesis techniques and contemporary artistic uses of machine learning, this paper examines what recursive training reveals about the dependent nature of AI-generated data. It argues that the potential effects of collapse challenge transhumanist ideals while inviting an aesthetic perspective, positioning noise and recursion as key concepts for understanding both artmaking and the AI ecosystem. Distributing agency across scales and networks, the latter currently remains reliant on new human-produced content, particularly within foundation models trained on massive datasets.

UV parameterization is a fundamental step in 3D content creation, yet producing production-ready UV layouts remains challenging due to the gap between geometric distortion objectives and the stylistic preferences of professional artists. While classical methods optimize handcrafted energy functions, artist-authored UVs exhibit structural patterns such as straightened seams, axis-aligned islands, and flexible interior deformation, properties that are difficult to explicitly formulate. In this work, we present DreamUV, an end-to-end learning framework that formulates UV unwrapping as a generative Flow Matching problem. Rather than predicting a single optimal parameterization, DreamUV learns a mesh-conditioned transport process that maps noise samples to a distribution of artist-like UV layouts. To reflect real-world authoring practices, we introduce a boundary-aware training strategy that prioritizes seam geometry, and a Model-in-the-Loop Finetuning(MITL) scheme that explicitly accounts for discretization errors during sampling and stabilizes transport dynamics under heterogeneous supervision. We evaluate DreamUV on a large-scale dataset of professionally authored UV layouts. Experiments demonstrate that our method produces significantly straighter boundaries and tighter axis-aligned islands than both classical and learning-based baselines, while maintaining competitive distortion metrics. Qualitative results and a user study with professional artists further confirm that DreamUV generates UV layouts that are not only valid, but aligned with practical production requirements.

Recently, several learning paradigms have been introduced to enforce idempotency in generative models. The goal is to ensure that repeated application of a model leaves samples unchanged once they lie on the target data manifold. In practice, however, many of these approaches fail to achieve exact fixed points, leading to instability and drift under repeated application. In this work, we argue that a key reason for this failure is a geometric mismatch between the manifolds learned by the encoder and decoder. The encoder projects inputs onto one latent manifold, while the decoder implicitly learns to reconstruct data from a different manifold. This discrepancy prevents the model from learning truly idempotent mappings. To address this issue, we propose a new training framework that explicitly closes this gap by forcing the encoder and decoder to learn consistent representations of the same underlying data manifold. By aligning the geometry of these components, our method encourages stable projections. Empirically, we show that our approach achieves significantly lower idempotency error and consistently regenerates identical outputs under repeated application, compared to existing methods. We demonstrate the effectiveness of the proposed framework on both image generation and image editing tasks. Finally, we show that enforcing idempotency in this manner improves identity preservation and information stability, leading to more realistic and controllable generative editing models.

Characterizing the complete wall-pressure spectrum in turbulent wall-bounded flows requires simultaneous access to the viscous-scale high-wavenumber content and the outer-layer low-wavenumber content -- a requirement that neither short-domain direct numerical simulation (DNS) nor sparse experimental measurements alone can satisfy. We propose Patched Flow Matching (Patched FM), a generative framework that fuses these two complementary sources by learning a patch-local prior over inner-scaled wall-pressure statistics from short-domain DNS and assimilating sparse sensor measurements at inference time through training-free posterior sampling. The patch-additive decomposition of the flow matching vector field decouples the generative prior from the global domain size, enabling reconstruction on domains arbitrarily larger than the training configuration. By expressing the patch prior in inner-scaled coordinates, where high-wavenumber wall-pressure statistics are approximately Reynolds-number invariant, the framework extends to higher Reynolds numbers through hierarchical transfer learning with as few as $500$ short-domain snapshots ($2.5\%$ of the base training data) at a fraction of the scratch-training cost. Applied to compressible channel-flow DNS at $Re_τ= 180$, $500$, and $1000$, Patched FM reconstructs full-resolution wall-pressure fields on a domain four times larger than the training configuration ($L_x^L = 16πδ$ versus $L_x^S = 4πδ$) from sensor coverage as low as $0.25\%$, recovering the low-wavenumber spectral content inaccessible to short-domain DNS with high fidelity in both streamwise and spanwise directions. Zero-shot generalization to unseen Reynolds numbers and ablation studies further confirm the role of inner scaling as a physical prerequisite for data-efficient Reynolds-number transfer.

Deep generative models reproduce the observational distribution of their training data, inheriting any spurious associations it contains. A common source is an unobserved confounder that shapes both an attribute the user wants to control at sampling time and an attribute expected to vary in response. Existing causal generative approaches resolve the resulting ambiguity by imposing structural assumptions strong enough to single out one interventional distribution; in image domains, such assumptions are rarely warranted, and the data is generally consistent with a set of distinct causal mechanisms -- a feasible region of interventional distributions. We propose CauVaDE (Causal Variational Deep Embedding), built on a canonical augmented SCM in which the unobserved confounder collapses, without loss of generality, into a discrete latent cluster of bounded support while continuous variation is absorbed into independent noises. We prove that this canonical class is dense, in both observational and interventional Wasserstein distance, in the class of augmented SCMs compatible with a given causal diagram, and instantiate it as a mixture variational autoencoder whose cluster variable plays the role of the canonical confounder. An entropy regularizer with weight $γ$ on the cluster posterior then traces a family of candidate causal effects that fit the observational data to comparable likelihood while spanning the feasible region. Experiments on image data benchmarks show that CauVaDE produces diverse interventional samples and improves FID against an unconfounded reference.

We present TriFlow, a new generative approach for producing compact 3D meshes with artist-like triangle topology directly from input geometry conditions such as signed distance fields. Our key insight is to represent mesh topology as a nearest-vertex vector field (NVF) defined over the surface, where each point encodes its association to the nearest triangle vertex in the local barycentric frame. We train a latent flow-matching model to synthesize this field, enabling topology generation conditioned on the input geometry. To extract a coherent mesh, we cluster surface regions using the generated NVF and guide a constrained quadric error metric (QEM) mesh simplification with topology-aware optimization. This yields output meshes that closely match the input geometry while exhibiting structured, artist-like connectivity. Experiments demonstrate that TriFlow achieves stronger generalization and significantly improved topology quality compared to state-of-the-art learning-based approaches, alongside 90% lower Chamfer Distance and an 8x speedup.

The incorporation of generative models into traditional computational systems presents both enormous opportunity and tremendous peril. Although many early adopters have realized these perils at great expense, the field still requires foundational frameworks to de-risk incorporation of AI into traditional systems. This manuscript establishes this foundation through the definition of four specific primitives of AI blended architecture, designed to enable deterministic encapsulation of probabilistic models. It further establishes two overarching anti-patterns broadly represented across industry to serve as warnings for engineers in this field. This framework was designed to enable successful integration of AI into traditional systems while providing a foundation upon which generative model providers could build the next generation of generative model interfaces.

Generative models can produce individually plausible samples while deviating substantially from a target set in the distribution of key features. For example, a model pretrained on broad drug-like chemical space may generate molecules whose molecular features differ from those of a therapeutic class of interest, such as known antibiotics. Correcting such distributional miscalibration is challenging: direct finetuning on the target set can overfit and does not control which features are matched. To fill this gap, we introduce kernel Calibrating Generative Models (kCGM). kCGM minimizes a maximum mean discrepancy (MMD) between generated and target feature distributions using an unbiased score-function estimator, with KL regularization to remain close to the pretrained model. On a target set of 174 antibiotics, direct finetuning sacrifices chemical validity for feature-distribution matching, whereas kCGM improves target feature matching while increasing validity. We further demonstrate kCGM in protein and DNA generation tasks, showing it can adapt autoregressive, continuous-space diffusion, and discrete diffusion models using only feature-level supervision. Code is available at https://github.com/smithhenryd/cgm.

Reliable generalization in conditional latent variable models requires understanding both identifiability and extrapolation: how observed variation across attributes determines latent structure, and how that structure determines distributions at unseen attributes. However, existing identifiability and extrapolation guarantees are largely model-specific, with separate analyses in nonlinear ICA, causal representation learning, perturbation modeling, and related conditional latent variable models. We introduce concept modulation models (CMMs), an attribute-indexed class of conditional generative models with structure $A\to Λ\to C\to X$, where attributes select modulators, modulators induce latent concept laws, and concepts generate observed features. CMMs lift transition-based identifiability to conditional settings by showing that feature agreement on observed attributes induces a latent concept transition constrained by the CMM class. We express these constraints through attribute potentials, log-density ratios between attribute-conditioned concept laws, separating the generic lifting step from model-specific rigidity arguments. The same potentials control extrapolation: agreement at unseen attributes holds exactly when the transported attribute-potential identities extend to those attributes. This yields algebraic extrapolation criteria, identifies the common potential-based proof objects behind several existing identifiability and extrapolation results, and, when combined with the model-specific rigidity arguments in those works, recovers their stated conclusions.

We introduce Perron--Frobenius Operator Matching (PFOM), a generative framework that matches density evolution via the integral PF operator, subsuming flow, diffusion, and jump models. We prove that among Bregman divergences, only Kullback--Leibler divergence preserves equality between density-level and sample-conditioned objectives, yielding a practical loss equivalent to Koopman path matching. We further develop Nesterov-accelerated training and sampling that stabilize discretization and accelerate convergence. %On Gaussian mixtures and two-moons, PFOM achieves faster KL/$W_2$/MMD decrease and improved wall-clock efficiency with empirical validation. PFOM unifies operator-theoretic identification with modern generative modeling and opens paths to adaptive dictionaries and high-dimensional applications.

In this report, we present LOGOS (Language Of Generative Objects in Science), a scientific generative language model that unifies heterogeneous tasks across the natural sciences within a single autoregressive framework based on a shared scientific grammar. It encodes diverse scientific objects and their spatial interactions as token sequences over a common vocabulary. By representing spatial contact and constraint patterns as discrete tokens, the model captures complex structural interactions in a purely sequential manner, without relying on explicit coordinates or geometric neural networks. This unified representation enables a wide range of downstream tasks to be formulated consistently as next-token prediction in the same grammar space, creating strong alignment between continued multi-domain pre-training and downstream objectives. Across diverse tasks, LOGOS consistently matches or outperforms domain-specific baselines, providing preliminary evidence for the feasibility of "one model fits all" in the natural sciences. We train LOGOS models at different scales (1B, 3B, and 8B parameters) and find a consistent positive correlation between model size and performance. This suggests that the future of AI for Science (AI4S) may not lie in building an independent technical stack that is separated from large language models (LLMs). Instead, it may depend on deeply aligning scientific foundation models with LLMs through shared architectures, shared training paradigms, and shared inference infrastructure, so that LLMs can truly become a new entry point for AI4S. We release the model weights and associated resources to facilitate further research.

We introduce, to our knowledge, the first deep generative modeling framework for probability distributions continuously supported on compact metric graphs. Given source and target measures on a metric graph, our method embeds the graph into a smooth ambient space, solves an entropic Kantorovich problem via a neural semidual parameterization, and projects generated samples back onto the original graph. We study two embedded geometries: an extrinsic Euclidean realization and the intrinsic tropical Abel--Jacobi embedding into the Jacobian torus. In both cases, the resulting generator is graph-supported by construction. We prove that, in the joint limit of increasing neural expressivity, the learned generator converges weakly to a valid transport coupling between the original graph measures. Empirically, across a range of geometrically distinct graphs, our method matches or improves upon heuristic transport baselines based on discrete graph OT, while scaling more favorably. Finally, we demonstrate scalability on real-world urban mobility data by training our model on one million Uber pickup locations in Manhattan, New York City.

Flow matching is a powerful generative modeling framework, valued for its simplicity and strong empirical performance. However, its standard formulation treats signals on structured spaces, such as fMRI data on brain graphs, as points in Euclidean space, overlooking the rich topological features of their domains. To address this, we introduce topological flow matching, a topology-aware generalization of flow matching. We interpret flow matching as a framework for solving a degenerate Schrödinger bridge problem and inject topological information by augmenting the reference process with a Laplacian-derived drift. This principled modification captures the structure of the underlying domain while preserving the desirable properties of flow matching: a stable, simulation-free objective and deterministic sample paths. As a result, our framework serves as a drop-in replacement for standard flow matching. We demonstrate its effectiveness on diverse structured datasets, including brain fMRIs, ocean currents, seismic events, and traffic flows.