Representation Alignment

Multilingual large language models often produce inconsistent reasoning and answers for semantically equivalent prompts in different languages. Prior work suggests that intermediate representations can be relatively language-agnostic, but generation becomes increasingly language-specific as models commit to discrete output tokens. This is problematic because language-specific lexical choices can cause semantically equivalent reasoning paths to diverge across languages. These divergences motivate searching for a cross-lingual alignment signal that is less tied to any single vocabulary item or script. We propose SOLAR, an auxiliary objective for supervised fine-tuning that aligns soft-token representations across languages, using English as a pivot. Soft tokens are probability-weighted mixtures over the vocabulary embeddings, yielding continuous representations that can aggregate information from semantically related tokens across languages. We then align each non-English soft-token summary to its English counterpart in the shared embedding space. Across four multilingual reasoning benchmarks, SOLAR improves accuracy by up to +17.7 points over the base model and +3.8 over standard supervised fine-tuning, with the largest gains on low-resource languages. SOLAR also strengthens final-layer cross-lingual similarity and substantially reduces language-cluster separability, suggesting that aligning soft-token representations helps preserve shared semantic structure during multilingual reasoning.

Vision-Language-Action (VLA) models require large-scale video-action pairs, yet real teleoperation remains scarce. While generated robot videos offer a scalable alternative, existing methods treat them as real robot data by recovering pseudo-actions from synthesized pixels. We argue that deriving low-level control from generated visuals is a mismatched abstraction. A video captures only \emph{geometry}: the spatial trajectory representing the \emph{where} of a task. A real demonstration captures \emph{control}: the exact motor commands representing the \emph{how}. Human-to-robot video generation preserves these unequally: the visible geometry survives the generation process, while the underlying control signals are lost. This \textbf{Asymmetric Preservation Principle} dictates a clean rule: this surviving geometry should solely supervise visual perception, leaving control to real demonstrations. Following this principle, we propose \textbf{GRA} (\textbf{G}eometry-guided \textbf{R}epresentation \textbf{A}lignment), which extracts the geometric content as future 2D end-effector waypoints, computed from the source human video through pose estimation, retargeting, simulation, and calibrated projection, and routes them to the VLA vision backbone via an auxiliary 2D head. The action head is trained on real demonstrations only. During fine-tuning, the waypoint loss persists as a \textbf{spatial representation anchor} that prevents the backbone from losing its geometric grounding. On real-robot tasks, GRA outperforms pseudo-action baselines under matched data budgets and narrows the gap to policies trained with substantially more real demonstrations, suggesting that correctly routed geometry bridges generated videos to robot policies more reliably than recovered actions.

Federated low-rank adaptation methods are attractive for fine-tuning large models under communication and privacy constraints, but heterogeneous client data can induce geometric misalignment between local low-rank updates. We study whether this subspace misalignment leads to destructive aggregation and slower convergence in LoRA-based federated learning. We propose a subspace-regularized federated LoRA objective that encourages local client updates to remain close to a shared global reference subspace. We present a complete empirical evaluation on two pretrained models, RoBERTa-large and SmolLM-360M, over HellaSwag in a non-IID 10-client federated setting, across 3 random seeds (42, 43, 44), yielding 24 total experimental runs (4 methods x 3 seeds x 2 models). On RoBERTa-large, Subspace-Reg achieves the strongest mean best accuracy (0.454 +/- 0.023), mean final accuracy (0.429 +/- 0.011), and lowest final loss (1.363) across all three seeds, outperforming FedAvg, SVD redistribution, and FedSVD baselines by a large margin. On SmolLM-360M, FedAvg leads on accuracy, revealing that accuracy gains are model-dependent. Crucially, Subspace-Reg achieves near-perfect basis overlap, approximately 0.9999, on both models and across all seeds, versus 0.958 to 0.991 for all baselines, providing robust support for the geometric alignment hypothesis. The code is publicly available at https://github.com/sadia-sigma-lab/Subspace-Constrained-Federated-learning-with-Lora.

This paper introduces CraBERT, a pre-trained phoneme encoder (PPEnc) designed for efficient pre-training in text-to-speech (TTS). CraBERT employs a cascade-fusion architecture and a subword-phoneme alignment algorithm to integrate representations from a pre-trained subword-level BERT into a phoneme-level BERT. This design provides prior word- and sentence-level information, reducing the amount of pre-training required by the phoneme encoder. Subjective listening evaluations show that CraBERT achieves MOS values comparable to existing PPEncs after approximately one epoch of pre-training, whereas the baselines in our comparison are pre-trained for approximately ten epochs. These results demonstrate that CraBERT can efficiently learn representations suitable for improving the perceived naturalness and prosody of synthesized speech.

Cross-subject EEG decoding promises more training data, but it also exposes neural networks to strong inter-subject distribution shifts. We study whether task supervision and architecture alone can learn subject-aligned representations. We replace a shared EEG encoder with subject-specific encoders followed by a common classifier, and compare this hybrid model with standard EEGNet, AttentionBaseNet, and CTNet baselines with Euclidean Alignment (EA) on three motor-imagery datasets and one motor-execution dataset. EA improves shared encoders by recentering subject covariances, whereas the hybrid encoder reduces reliance on EA: removing EA has little effect on validation-loss dynamics or latent-space organization, and both hybrid variants consistently outperform non-aligned shared baselines. Subject-specific heads increase class distinctiveness and place each subject close to its own latent manifold while improving within-subject class separation. However, on cross-subject classification, subject-specific heads hinder direct parameter transfer to unseen subjects, motivating quantitative head selection and a brief calibration session. Although decoding gains depend on the dataset and backbone, our main findings concern that the sole use of architecture pressure promotes representation learning and alignment in a direction complementary to domain adaptation methods such as Euclidean Alignment. A per-subject low-rank adapter of only 2Cr parameters recover the full encoder's accuracy across five backbones and ranks $r=1$ to 16, so the per-subject module can be compressed by two to three orders of magnitude.

Evaluating representation similarity is fundamental to representation learning. However, existing metrics suffer from significant limitations: they lack interpretability due to shifting baselines, lack robustness to outliers, and are computationally intractable for large datasets, forcing reliance on heuristic approximations. To address this, we develop an ordinal-similarity framework, instantiated by the Triplet (TSI) and Quadruplet (QSI) Similarity Indices, which measure alignment by quantifying the consistency of ordinal relationships. We theoretically demonstrate this formulation is inherently interpretable, robust to outliers, and computationally efficient. Finally, we establish a formal equivalence between TSI and local neighborhood alignment, measured by Mutual Nearest Neighbors. Empirically, we validate these properties and show that ordinal similarity offers a scalable approach to measuring alignment, enabling practitioners to better understand and design representations.

Text-attributed Graphs (TAGs) incorporate textual node attributes with graph structures to describe rich relational semantics. Recent efforts to integrate Graph Neural Networks (GNNs) and Large Language Models (LLMs) have shown promise for learning on TAGs, yet achieving well-aligned representations remains challenging. Prior studies largely rely on heuristics that perform coarse-grained matching. They lack sufficient constraints and ignore distributional alignment, leading to representation drift and limited generalization. Building on Energy-based Models (EBMs), we propose an Energy-based Representation Alignment (ERAlign) framework that projects GNN-encoded graph structure and LLM-derived text embeddings in a shared latent space to achieve distribution consistency. Concretely, layer-wise alignment is quantified by a distance metric and optimized via an EBM objective. By decreasing energy values, our framework yields well-aligned representations for downstream tasks. During training, we introduce Energy Discrepancy (ED) to avoid high sampling costs associated with intractable normalization. ED also carries theoretical guarantees of higher training efficiency and reduced energy landscape distortion. Empirical evaluations on eight TAG datasets demonstrate that ERAlign obtains state-of-the-art performance across varying levels of supervision and cross-task transfer scenarios.

Representation alignment with pretrained vision models has recently shown strong potential for accelerating diffusion transformer training. By aligning intermediate diffusion features with clean-image representations from self-supervised vision encoders, existing methods improve convergence and generation quality. However, such alignment also introduces a non-trivial constraint: diffusion models operate on noisy inputs whose usable information varies across timesteps, while the reference features are extracted from clean images. In this paper, we revisit this mismatch from a token-level perspective. We find that, under full-token representation alignment, tokens with large alignment-gradient norms exhibit a stable spatial preference, suggesting that the alignment objective does not affect all tokens uniformly and may encourage the model to rely on the complete set of clean-image tokens. To address this issue, we propose MaskAlign, a token-subset representation alignment method that applies alignment to randomly sampled token subsets during training. By exposing the model to different token subsets across iterations, MaskAlign reduces the dependence of representation alignment on the complete token set and encourages alignment behavior that is more stable under token-subset perturbations. To mitigate the information loss caused by directly dropping tokens, we further introduce a lightweight pre-mask token mixing block that shares information across tokens before masking.

Researchers have shown that neural similarity among humans predicts social closeness and cooperative success, whereas innovation often emerges from interactions among dissimilar individuals. We investigate whether these principles extend to artificial intelligence by examining interactions between large language models. In our experiments, 276 model pairs interact across eight games spanning both cooperation and novelty. We find that pairs with more similar representation spaces achieve significantly higher cooperation but exhibit reduced novelty and creativity. The effects of representational similarity on cooperation and novelty remain robust even after controlling for other factors such as performance disparity and model size. We also find that similarity in the early layers consistently shows the strongest association with cooperation and novelty, compared to the middle and later layers. This suggests that a central factor underlying these patterns could be the extent to which the two models share lexical and semantic grounding. Overall, representational similarity can be an important consideration in multi-agent system design.

Demand for low-precision inference, including NVFP4-based approaches, has grown as large language models are increasingly deployed in latency and cost constrained production environments. Quantization-aware distillation (QAD) helps recover accuracy lost under low bit quantization by training a quantized student to match the output distribution of a frozen higher precision teacher via a KL-divergence loss. In this work, we first provide a representation level diagnosis of QAD: output matching alone can mask internal degradation, because many intermediate activation geometries can yield similar teacher-aligned logits. Using CKA, we show that KL-only QAD can reduce layerwise representational similarity relative to the BF16 teacher, with especially severe drift in RL-post-trained models. This drift correlates with downstream bottlenecks on reasoning and coding tasks, suggesting that low bit recovery requires preserving internal geometry rather than matching outputs alone. Motivated by this finding, we propose \textbf{CKA-QAD}, a CKA-guided representational alignment method for NVFP4 QAD and low bit LLM accuracy recovery. The method adds a lightweight regularizer that preserves internal representational geometry during distillation by aligning layerwise Gram matrices through CKA. Across Nemotron 3 Nano and Qwen3-4B-Thinking-2507, CKA-QAD substantially improves representational alignment and improves downstream reasoning and coding accuracy with modest training overhead. Our findings position CKA-guided representational alignment as a practical complement to output matching for quantized LLM recovery.

Recent work shows that language models can transmit behavioural traits through hidden signals in generated data during training. We ask whether a different activation-mediated channel is viable: can one language model communicate a useful intermediate reasoning state to another at inference time through a post-hoc linear activation bridge, rather than through a textual or structured-token relay? We test this question in a controlled Pythia-160M to Pythia-410M multi-hop reasoning setting. A linear translation layer learns a strong normalized-space map between sender and receiver hidden states, with normalized cosine similarity near 0.97 across seeds. However, when the translated activations are injected into the receiver at inference time, they do not improve downstream answering. Low-strength additive injection remains near the no-injection baseline, with confidence intervals that cross zero. Replacement-style injection is consistently destructive, and rescaling translated vectors to the receiver hidden-state norm does not rescue performance. The result is therefore a scoped negative result: in this setting, offline representational alignment is not sufficient for useful causal communication inside the receiver.

Catastrophic forgetting is often framed as a representational problem: after sequential training, a model appears to lose the features that supported performance on earlier tasks. We challenge the stronger form of this view. Across controlled continual-learning settings, we find that a significant portion of apparent forgetting can be attributed to interface drift between internal stages rather than permanent erasure of task-relevant computation. We study this phenomenon through a stitched evaluation protocol that combines early computation from a post-update network with late computation from its predecessor, optionally mediated by a compact, task-specific transport key. We describe transport keys at a systems level as compact interface-alignment operators estimated from a small set of paired anchor activations and evaluated through model stitching. On split CIFAR-100 with a ResNet-style network, transport keys recover most of the original Task A performance after sequential training on Task B. On a compact vision transformer, we observe a similar recovery pattern. These results suggest that continual learning may require better mechanisms for indexing and re-accessing latent computations, not only methods that prevent weight change.

Embodied visual navigation, where an agent perceives a complex environment and acts to reach a goal from raw sensory input, underpins a wide range of applications such as household service robotics, assistive robotics, and large-scale autonomous exploration. However, recent attempts to unify vision-and-language navigation (VLN) and object goal navigation (ObjNav) remain at the level of architectural fusion, mixed-task training, and large vision-language pretraining, without examining whether independently trained vision and language encoders may already share a common semantic structure. Moreover, even object-centric topological maps still ground language goals through explicit cross-modal supervision such as CLIP or large vision-language models, leaving open whether such grounding is possible from a purely vision-built map. To address these challenges, we extend the Platonic Representation Hypothesis to embodied navigation and recast vision-only ObjNav, cross-modal ObjNav, and VLN as three different interfaces to the same object-centric semantic manifold. We further introduce PlatonicNav, a training-free framework whose Platonic Topological Map fuses geometric and semantic node distances from a self-supervised visual encoder, and grounds language goals via blind matching without any paired vision-language data. Extensive experiments on simulation benchmarks including HM3D-IIN, OVON, and R2R-CE on MP3D, together with deployment on Unitree Go2, demonstrate that PlatonicNav generalizes across tasks, modalities, and embodiments without explicit cross-modal training. Code: https://github.com/AIGeeksGroup/PlatonicNav. Website: https://aigeeksgroup.github.io/PlatonicNav.

A simple way to improve the performance of almost any machine learning model is not to train a single but several models with diverse algorithms which will make slightly distinct kinds of predictions and errors on the same data, and thus improve the average predictions and robustness. However, making predictions using a whole ensemble of models is cumbersome and computationally too expensive to allow deployment to a large number of users, especially if the models are large neural nets. In response to this, we introduce a layer and point wise projection mapping, which maps student and teacher representations into an aligned high-dimensional embedding space during training process. The proposed approach combined with LoRA injection reduces the student model trainable parameters to less than 1% of the teacher model, while significantly improving word error rate (WER) compared to other distillation methods, as demonstrated in ablation studies. Unlike a mixture of experts, our method can be trained rapidly and in parallel.

Recent diffusion transformers have demonstrated strong image synthesis capabilities but remain inefficient to train due to weak alignment between generative and discriminative representations. While representation alignment frameworks such as REPA improve convergence by aligning noisy denoising features with pretrained visual encoders, their externally supervised alignment loss is static and lacks adaptivity during training and inference. Existing methods rely on fixed cosine alignment or contrastive objectives, which cannot dynamically balance representation consistency and generation quality, resulting in limited discriminative benefit and failing to optimize alignment in a task-adaptive manner. To address this, we propose VRPO, a reinforcement-based optimization strategy that replaces REPA's static alignment loss with a generative representation policy optimization objective. Instead of enforcing a fixed similarity constraint, VRPO treats representation alignment as a reward-guided process: the model receives adaptive rewards based on generation fidelity, perceptual quality, and semantic coherence between the diffusion features and pretrained visual embeddings. This formulation enables the generator to continuously refine its internal representations toward semantically meaningful directions while improving image quality. Our VRPO-driven training seamlessly integrates into diffusion transformers, introducing negligible computation cost and preserving full compatibility with SiT and DiT architectures. Extensive experiments on ImageNet-256x256 demonstrate that our VRPO-Alignment substantially enhances both convergence and fidelity, achieving up to +1.8 FID improvement and 2.3x faster training compared to REPA under identical compute budgets.

Multilingual Information Retrieval (MLIR) reflects real-world search environments in which queries and relevant documents may appear in different languages within a mixed-language corpus. However, existing embedding models are primarily optimized for Multi-Monolingual retrieval and their performance often degrades in MLIR settings. Moreover, directly applying conventional contrastive learning to MLIR can exacerbate language clustering and expose a trade-off between cross-lingual alignment and embedding uniformity. To address these limitations, we propose MIMO: Multilingual Information Retrieval via Monolingual Objectives, a two-stage framework that uses a stable English semantic space from a high-performing teacher model as an anchor. MIMO first initializes the student model's cross-lingual alignment through knowledge distillation, and then jointly optimizes distillation and cross-lingual contrastive learning to improve retrieval discrimination while preserving alignment. Extensive experiments show that MIMO consistently outperforms existing cross-lingual training baselines across various MLIR and Multi-Monolingual benchmarks. MIMO also remains competitive with off-the-shelf models of similar or larger parameter scales. Furthermore, our cross-lingual Alignment-Uniformity analysis clarifies the distinct roles of the two loss components and shows that their combination yields a favorable trade-off between alignment and uniformity.

In the context of resource-constrained environments such as embedded systems, adapting reduced-size foundation models to downstream tasks has become increasingly popular. This has recently motivated the emerging setting of task-specific distillation, where a larger and a smaller version of the same foundation model are both adapted to the same downstream task, with the goal of transferring knowledge from the former to the latter. Recent work has demonstrated the benefits of using a larger version of the same foundation model to assist the adaptation of a smaller one. Typically, the larger model (teacher) is first adapted via fine-tuning or linear probing before its knowledge is distilled into the smaller model (student). While fine-tuning the teacher often increases its performance, recent work showed that probing it leads to better knowledge distillation to the student. Our findings show that this is mainly due to a mis-alignment in feature representation between the teacher and the student which occurs during the teacher's fine-tuning. Inspired by existing efforts to preserve previously learned knowledge, we first propose leveraging low-rank adaptation, resulting in better feature alignment and therefore better knowledge transfer. Drawing from this insight, we further enhance the feature alignment through a parameter-sharing strategy of the adapters between the two encoders during joint training. Our proposed method, SLAD, shows better feature alignment between the teacher and student, which results in increased performance for not only the student but also the teacher model, while being 2x faster to train than fine-tuning. Through extensive experiments on multiple classification and segmentation datasets, we demonstrate the improved accuracy and transfer efficiency of our method, achieving state-of-the-art performance in the task-specific distillation framework.

Vision Foundation Models (VFMs) have demonstrated impressive representational capabilities. However, adapting them to downstream tasks via full fine-tuning incurs prohibitive computational and storage overhead. Parameter-Efficient Fine-Tuning (PEFT) has emerged as a compelling alternative, aiming to achieve performance parity with full fine-tuning at minimal training costs. Nonetheless, applying PEFT to VFMs for dense prediction tasks remains challenging due to the structural and distributional gaps. To bridge these gaps, we propose \textbf{S}cale-\textbf{I}ntegrated \textbf{G}lobal \textbf{M}odulation \textbf{A}dapter (\textbf{SIGMA}), a novel lightweight PEFT method, which consists of two modules: scale-adaptive fusion and semantic modulation. Specifically, the scale-adaptive fusion module is utilized to bridge structural gaps by enhancing the extraction of multi-granularity visual information. Furthermore, SIGMA introduces semantic modulation on the fusion features to perform global feature alignment to further eliminate the distribution gap. This design facilitates unified spatial and distributional adaptation, requiring only 1.72% trainable parameters relative to the VFM backbone. Comprehensive experiments across various downstream dense tasks and multiple VFM backbones demonstrate that SIGMA achieves consistent and superior performance over state-of-the-art PEFT methods.

Neural networks encode inputs as high-dimensional vectors, known as representations, that capture how models process data by encoding task-relevant structure and semantics. Representation alignment refers to the degree to which different models, layers, or training conditions produce similar representations for the same inputs, with important implications for model interpretation, selection, and robustness analysis. Existing approaches to measure alignment primarily rely on geometric properties, such as neighborhood and cluster similarity, offering limited insight into the global organization of representations. In this work, we present TopoAlign, a topology-aware framework for visually comparing model representations from a structural perspective. Leveraging mapper graphs from topological data analysis, TopoAlign jointly analyzes graphs constructed from representations of shared inputs across different models or layers. The framework supports a top-down comparative workflow: it first performs global structure alignment via joint force-directed optimization to produce coordinated graph layouts; it then identifies local correspondences through automated detection of structurally matching regions, visualized with Bubble Sets; and finally it enables fine-grained pattern inspection through motif-based queries and membrane-inspired visualizations. We demonstrate TopoAlign through case studies on language and multimodal models, complemented by expert feedback. Our results show that TopoAlign provides meaningful insights into representation structure and alignment from a topological perspective.

Independently trained transformers compute the same function in residual-stream bases that differ by a uniform random rotation on $\mathrm{SO}(d_{\mathrm{model}})$. We call this phenomenon polymorphism: same function, mutually unintelligible interior coordinates. One matrix multiplication per model pair removes it: an orthogonal Procrustes fit on a single batch of activations transfers sparse-autoencoder feature dictionaries and steering vectors between independently trained models, with no retraining. The phenomenon is invisible to the standard SAE universality metric. Decoder-column cosine similarity matches across seeds at 98%, the SAE-universality headline number, while an SAE trained on one seed reconstructs another seed's activations at negative explained variance, worse than predicting the constant mean. The decoder columns align; the encoder reads from a rotated frame. A single Procrustes rotation $R$ restores reconstruction to within 0.025 EV of the within-seed ceiling at every internal site. $R$ is Haar-distributed: $\|R - I\|_F$ matches the random-orthogonal prediction $\sqrt{2 d_{\mathrm{model}}}$ to 0.1% at $d_{\mathrm{model}} = 512$, and a Kolmogorov-Smirnov test of $R$'s eigenvalue spectrum against Haar $\mathrm{SO}(d_{\mathrm{model}})$ returns $p \approx 1.000$ pooled and per-pair. Diff-of-means steering vectors transfer in three regimes by alignment with $R$'s invariant subspace: clean when pinned by shared output weights, partial when overlapping the rotated subspace, inverted otherwise. With no shared I/O (Pythia), all three collapse to universally inverted. The same rotation account holds across training checkpoints within a single run. Validated on a 104k-parameter Dyck-3 transformer and nine independently-trained Pythia-70m seeds on The Pile, via a pre-registered four-bar operational framework. Frontier-scale (10B+) replication remains open.

In the context of artificial neural networks, subliminal learning refers to the transfer of task-relevant knowledge or unintended biases from teacher to student models through distillation on task-unrelated input$\unicode{x2013}$output pairs. Prior explanations tie this effect to shared or closely matched teacher$\unicode{x2013}$student initialization. We show that a closely matched initialization is not necessary. Instead, subliminal learning is governed by compatible output heads. Using a controlled MNIST setting, we split outputs into an auxiliary head (for auxiliary, task-unrelated noise signals) and a class head (for classification) to demonstrate subliminal learning occurs$\unicode{x2014}$even when we randomly initialize hidden layers and remove layers, add new layers, or change the architecture (MLP-to-CNN). Compatible auxiliary heads enable transfer of a recoverable teacher signal, bringing the student's representations closer to the teacher's. When the class heads remain compatible as well, students trained only on task-unrelated noise can approach, and in favorable regimes match, teacher-level task performance. Our setting enables us to develop a theory that explains the mechanism of subliminal learning and to derive upper bounds on when subliminal learning fails. Together, our results turn subliminal learning from a surprising transfer effect into a theoretically grounded mechanism with predictable limits.

We investigate the Platonic Representation Hypothesis (PRH) through a tripartite statistical framework of representations: signal, bias, and noise. {1) Signal:} We propose that Platonic alignment arises from the universal relationship between objects and attributes, which is encoded linearly in representations according to the Linear Representation Hypothesis (LRH). We provide evidence that LRH helps explain PRH by extracting linear object-attribute features with sparse autoencoders and showing that these sparse representations often exhibit stronger cross-modal alignment than their dense counterparts. {2) Bias:} Models have different implicit biases due to the diverse architectures and training procedures used. We show that this difference can be partially mitigated. Centering and normalization consistently improve cross-model alignment. {3) Noise:} Finite-sample training leads to noise in representations. We provide evidence that representational noise is driven by data scarcity by revealing a strong and consistent positive correlation between word frequency and alignment in LLMs and text embedding models. Synthesizing signal, bias, and noise, we propose a statistical model that refines the Linear Representation Hypothesis and explains further phenomena related to the alignment of representations emerging from diverse modern AI architectures.

Sparse autoencoders (SAEs) are one of the main methods to interpret the inner workings of deep neural networks (DNNs), decomposing activations into higher-dimensional features. However, they exhibit critical shortcomings where a large fraction of features are never activated and are unstable. Despite variants of SAEs that attempt to mitigate these issues, they require additional data, resampling, or training. We propose the \textbf{aligned training}, a parameter-free reparameterization of SAEs that simultaneously improves reconstruction quality, eliminates dead features, and significantly enhances stability across training seeds. Our approach is motivated by an overlooked observation that SAE feature quality, measured by the inner product between encoder and decoder directions (which we call the \textbf{alignment score}), follows a bimodal distribution across all modern architectures. The proposed aligned training enforces a geometric constraint between the encoder and decoder such that their inner product equals one for every feature, which removes a source of degeneracy in the SAE training without adding any hyperparameters. Across multiple models, dictionary sizes, and sparsity levels, the aligned training shows Pareto improvements on the SAEBench benchmarks. Beyond improving dead features, stability and reconstruction, our method readily integrates with techniques in mechanical interpretability such as Top/BatchTop-K architectures and p-Annealing. Overall, the aligned training substantially improves feature quality and stability of SAE without computational complexity or cost.

Recent advances in Diffusion Transformers (DiTs) demonstrate that aligning noisy latent states with well-trained semantic features-as pioneered by Representation Alignment (REPA)-can substantially accelerate training and improve generation fidelity. Subsequent analysis(e.g., iREPA) suggests that these gains arise primarily from transferring spatial structure contained in pre-trained vision representations. However, mostly existing alignment methods employ point-wise matching objectives or rely on implicit architectural tweaks, which fail to explicitly model the spatial relational geometry inherent in vision foundation models. We argue that such element-wise supervision is insufficient to capture the rich spatial topology of visual representations, and that effective alignment for generation should instead be formulated as an explicit structural constraint. To this end, we propose sREPA, a structural REPresentation Alignment framework to enforce consistency in the relational geometry of feature maps, rather than merely matching individual feature points. By encouraging the model to internalize holistic spatial layouts and structural correlations from pre-trained features, sREPA achieves faster and more stable convergence, along with improved sample quality, compared to state-of-the-art alignment strategies. Our code and models will be released.

Layer pruning removes entire Transformer decoder blocks from large language models, but introduces a mismatch between the hidden state received by the next surviving layer and the distribution it was trained to process, leading to significant performance degradation. We propose Ghosted Layers, a training-free recovery module that addresses this issue by solving a boundary activation alignment problem. Our method derives a closed-form optimal linear operator from a small calibration set to reconstruct the activation discrepancy introduced by the pruned layers. We show that this solution corresponds to the unconstrained optimum of the alignment objective, whereas existing methods are restricted to constrained solutions over limited operator subspaces. Experiments across multiple LLM backbones and pruning strategies demonstrate that our method consistently improves accuracy and perplexity over prior training-free baselines, while preserving the efficiency gains of layer pruning. Official code repository: https://github.com/daniel-eai/ghosted_layers_official_repository/.

Deep neural networks trained with different architectures, objectives, and datasets have been reported to converge on similar visual representations. However, what remains unknown is which visual properties models actually converge on and which factors may underlie this convergence. To address this, we decompose the object similarity structure of 162 diverse vision models into a small set of non-negative dimensions. To determine universal versus model-specific dimensions, we then estimate how often each dimension reappears across models. In contrast to model-specific dimensions, universal dimensions are more interpretable and more strongly driven by conceptual image properties, indicating the relevance of interpretability and semantic content as implicit factors driving universality across models. Differences in architecture, objective function, training data, model size, and model performance do not explain the emergence of universal dimensions. However, models with more universal dimensions also better predict macaque IT activity and human similarity judgments, suggesting that universality reflects representations relevant to biological vision. These findings have important implications for understanding the emergent representations underlying deep neural network models and their alignment with biological vision.

While EEG foundation models have shown significant potential in universal neural decoding across tasks, their advancement remains constrained by the inadequacy modeling of complex spatiotemporal topology, as well as the inherent modality gap between low-level physiological signals and high-level textual semantics. To address these challenges, we propose a Knowledge-Anchored Semantically-Dynamic Topology Brain Autoregressive Model (KAST-BAR), which dynamically aligns physiological representations derived from multi-level brain topology with an expert-level semantic space. Specifically, we design a Dual-Stream Hierarchical Attention (DSHA) encoder that accurately captures the brain's intrinsic non-Euclidean topology by modeling local temporal dynamics with global spatial contexts. On this basis, a Knowledge-Anchored Semantic Profiler (KASP) is proposed to synthesize physically-grounded and instance-level textual profiles, which subsequently drive a Semantic Text-Aware Refiner (STAR) to dynamically reconstruct EEG representations using Latent Expert Queries. By conducting large-scale pre-training on 21 diverse datasets to build a foundation model, KAST-BAR effectively integrates expert-level medical knowledge into EEG signal representations, consistently achieving superior performance across six downstream tasks. Our code is available at https://github.com/KAST-BAR/KAST-BAR

The field of image-to-video generation has made remarkable progress. However, challenges such as human limb twisting and facial distortion persist, especially when generating long videos or modeling intensive motions. Existing human image animation works address these issues by incorporating human-specific semantic representations, e.g., dense poses or ID embeddings, as additional conditions. However, conditioning on these representations could decrease the generation flexibility. Moreover, their reliance on RGB pixel supervision also lacks emphasis on learning necessary 3D geometric relationships and temporal coherence. In contrast, we introduce a novel approach named SemanticREPA that leverages these semantic representations as supervision signals through representation alignment. Specifically, we begin by training a structure alignment module that aligns the structure representations obtained from video latents with video depth estimation features. We then fix the pretrained module, and utilize it to provide additional supervision on the structure representations of the diffusion models, achieving structure rectification to generate coherent and stable human structures. Simultaneously, we develop an ID alignment module to align the ID representations of the generated videos to face recognition features. We further propose to use the predicted structure representations to refine identity restoration in relevant regions. With structure and ID alignment, our method demonstrates superior quality on extended character motions and enhanced character consistency.

Large language models represent the same reasoning in vastly different surface forms -- English prose, Python code, mathematical notation -- yet whether they share a common internal substrate across these symbolic systems remains unknown. We introduce the TriForm Benchmark (18 concepts x 6 forms x 3 instances = 324 stimuli) and study five LLMs (1.6B-8B) across three architecture families. Using permutation-corrected RSA, cross-form probing, and activation patching, we find converging evidence for a Format-Agnostic Reasoning Subspace (FARS) in middle layers. We make FARS concrete: concept-centroid PCA extracts a 10-dimensional subspace that amplifies concept structure 3x while suppressing form information to near zero. Replacing only these 10 dimensions during cross-form patching preserves 90-96% of model output -- far exceeding both full activation replacement (44-56%) and variance-maximizing PCA (60-74%) -- while ablating them causes targeted disruption. FARS generalizes to held-out concepts and converges across architectures (CCA > 0.79 for all model pairs), providing within-modality evidence for the Platonic Representation Hypothesis. We further discover a declarative-procedural asymmetry: representations are far more compatible between prose and mathematics than between either and code, suggesting that the critical axis of divergence is not linguistic vs. formal but declarative vs. procedural.

Crystal generative models mainly learn what stable crystals look like, with little explicit supervision for what makes them stable. We reveal a substantial representation gap between state-of-the-art crystal generative models and pretrained universal machine learning interatomic potentials (MLIPs) via energy probing, and show this gap can be closed by a simple training-time alignment. We propose Crystal REPresentation Alignment (CrystalREPA), a plug-and-play framework that aligns the atom-wise hidden states of generative encoders with frozen MLIP representations through an element-aware contrastive objective, transferring stability-aware atomistic priors with marginal training overhead and no additional inference cost. Across three generative frameworks, ten MLIP teachers, and two benchmark datasets, CrystalREPA consistently improves the thermodynamic stability, structural validity, and structural fidelity of generated crystals. Equally important, we find that an MLIP's transfer effectiveness is poorly predicted by its accuracy on standard leaderboards (e.g., Matbench Discovery) but strongly predicted by the distinguishability of its atom-wise representation space, yielding a practical, accuracy-independent criterion for selecting MLIP teachers for generative transfer.