Semantic Segmentation

Instance-sensitive losses for semantic segmentation such as blob loss and CC loss were designed to address instance imbalance, ensuring small lesions generate the same gradient as large ones, but operate only on single-class segmentation. In multi-class settings, class imbalance poses an additional problem: rare classes with few instances receive a disproportionately small share of the training signal. We show that extending instance-sensitive losses to multi-class segmentation via a one-vs-rest class decomposition repurposes them to also address class imbalance, as uniform averaging over classes ensures each class contributes equally regardless of frequency. We further show that inverse-size weighting, which destabilizes training when applied globally due to weight imbalances across rare and common classes, becomes effective when integrated within the per-component loss, confining the reweighting to each component's spatial context. On the BraTS-METS 2025 dataset (260 test cases), multi-class CC loss improves foreground Dice (0.64 +/- 0.26 vs. 0.59 +/- 0.27 baseline) and rare-class Dice, while maintaining Panoptic Quality at DSC threshold 0.5. Multi-class blob loss achieves the best Panoptic Quality at threshold 0.5 (0.40 +/- 0.24 vs. 0.38 +/- 0.25 baseline) and recognition quality (0.53 +/- 0.29 vs. 0.49 +/- 0.30). Integrating inverse-size weighting within the per-component loss increases rare-class Dice to 0.44 +/- 0.36 at the cost of reduced detection quality.

Semantic segmentation of multi-modal remote sensing imagery plays a pivotal role in land use/land cover (LULC) mapping, environmental monitoring, and precision earth observation. Current multi-modal approaches mainly focus on integrating complementary visual modalities, yet neglect the incorporating of non-visual textual data - a rich source of knowledge that can bridge semantic gaps between visual patterns and real-world concepts. To address this limitation, we propose TSMNet, a text supervised multi-modal open vocabulary semantic segmentation network that synergistically integrates textual supervision with visual representation for open-vocabulary semantic segmentation. Unlike conventional multi-modal segmentation frameworks, TSMNet introduces a dual-branch text encoder to extract both scene-level semantic and object-level label information from various textual data, enabling dynamic cross-modal fusion. These text-derived features dynamically interact with visual embeddings through the proposed text-guided visual semantic fusion module, enabling domain-aware feature refinement and human-interpretable decision-making. To verify our method, we innovatively construct two new multi-modal datasets, and carry out extensive experiments to make a comprehensive comparison between the proposed method and other state-of-the-art (SOTA) semantic segmentation models. Results demonstrate that TSMNet achieves superior segmentation accuracy while exhibiting robust generalization capabilities across diverse geographical and sensor-specific scenarios. This work establishes a new paradigm for explainable remote sensing analysis, demonstrating that textual knowledge integration significantly enhances model generalizability. The source code will be available at https://github.com/yeyuanxin110/TSMNet

Wildfires are an escalating global concern due to the devastating impacts on the environment, economy, and human health, with notable incidents such as the 2019-2020 Australian bushfires and the 2025 California wildfires underscoring the severity of these events. AI-enabled camera-based smoke detection has emerged as a promising approach for the rapid detection of wildfires. However, existing wildfire smoke segmentation datasets that are used for training detection and segmentation models are limited in scale, geographically constrained, and often rely on synthetic imagery, which hinders effective training and generalization. To overcome these limitations, we present AusSmoke, a new smoke segmentation dataset collected from Australia to address the data scarcity in this region. Furthermore, we introduce a MultiNational geographically diverse and substantially larger fully-labelled benchmark, called MultiNatSmoke, that consolidates publicly available international datasets with the newly collected Australian imagery, expanding the scale by an order of magnitude over previous collections. Finally, we benchmark smoke segmentation models, demonstrating improved performance and enhanced generalization across diverse geographical contexts. The project is available at Github.

High-performance semantic segmentation has achieved significant progress in recent years, often driven by increasingly large backbones and higher computational budgets. While effective, such approaches introduce substantial computational overhead and limit accessibility under constrained hardware settings. In this paper, we propose DGM-Net (Directional Geometric Mamba Network), an efficient architecture that improves modeling capability through structural design rather than increasing model capacity. We introduce Directional Geometric Mamba (G-Mamba), a linear-complexity O(N) operator as an alternative to conventional context modeling modules such as ASPP and PPM. To further enhance structural awareness in state space model (SSM)-based modeling, we design the DGM-Module, which extracts centripetal flow fields and topological skeletons to guide the scanning process and improve boundary preservation. Without relying on large-scale pretraining or heavy backbone scaling, DGM-Net achieves 80.8% mIoU within 28k iterations, 82.3% mIoU on Cityscapes test set, and 45.24% mIoU on ADE20K. In addition, the model maintains stable performance under constrained hardware settings (e.g., batch size of 2 on 8GB VRAM), highlighting its efficiency and practicality. These results demonstrate that incorporating geometric guidance into SSM-based architectures provides an effective and resource-efficient direction for semantic segmentation.

Accurate quantification of the physical exposure area of beach litter, rather than simple item counts, is essential for credible ecological risk assessment of marine debris. However, automated UAV-based monitoring predominantly relies on bounding-box detection, which systematically overestimates the planar area of irregular litter objects. To address this geometric limitation, we develop PLAS-Net (Pixel-level Litter Area Segmentor), an instance segmentation framework that extracts pixel-accurate physical footprints of coastal debris. Evaluated on UAV imagery from a monsoon-driven pocket beach in Koh Tao, Thailand, PLAS-Net achieves a mAP_50 of 58.7% with higher precision than eleven baseline models, demonstrating improved mask fidelity under complex coastal conditions. To illustrate how the accuracy of the masking affects the conclusions of environmental analysis, we conducted three downstream demonstrations: (i) power-law fitting of normalized plastic density (NPD) to characterize fragmentation dynamics; (ii) area-weighted ecological risk index (ERI) to map spatial pollution hotspots; and (iii) source composition analysis revealing the abundance-area paradox: fishing gear constitutes a small proportion of the total number of items, but has the largest physical area per unit item. Pixel-level area extraction can provide more valuable information for coastal monitoring compared to methods based solely on counting.

We propose Semantic-Fast-SAM (SFS), a semantic segmentation framework that combines the Fast Segment Anything model with a semantic labeling pipeline to achieve real-time performance without sacrificing accuracy. FastSAM is an efficient CNN-based re-implementation of the Segment Anything Model (SAM) that runs much faster than the original transformer-based SAM. Building upon FastSAM's rapid mask generation, we integrate a Semantic-Segment-Anything (SSA) labeling strategy to assign meaningful categories to each mask. The resulting SFS model produces high-quality semantic segmentation maps at a fraction of the computational cost and memory footprint of the original SAM-based approach. Experiments on Cityscapes and ADE20K benchmarks demonstrate that SFS matches the accuracy of prior SAM-based methods (mIoU ~ 70.33 on Cityscapes and 48.01 on ADE20K) while achieving approximately 20x faster inference than SSA in the closed-set setting. We also show that SFS effectively handles open-vocabulary segmentation by leveraging CLIP-based semantic heads, outperforming recent open-vocabulary models on broad class labeling. This work enables practical real-time semantic segmentation with the "segment-anything" capability, broadening the applicability of foundation segmentation models in robotics scenarios. The implementation is available at https://github.com/KBH00/Semantic-Fast-SAM.

Understanding road scenes in a geometrically consistent, scene-centric representation is crucial for planning and mapping. We present GOLD-BEV, a framework that learns dense bird's-eye-view (BEV) semantic environment maps-including dynamic agents-from ego-centric sensors, using time-synchronized aerial imagery as supervision only during training. BEV-aligned aerial crops provide an intuitive target space, enabling dense semantic annotation with minimal manual effort and avoiding the ambiguity of ego-only BEV labeling. Crucially, strict aerial-ground synchronization allows overhead observations to supervise moving traffic participants and mitigates the temporal inconsistencies inherent to non-synchronized overhead sources. To obtain scalable dense targets, we generate BEV pseudo-labels using domain-adapted aerial teachers, and jointly train BEV segmentation with optional pseudo-aerial BEV reconstruction for interpretability. Finally, we extend beyond aerial coverage by learning to synthesize pseudo-aerial BEV images from ego sensors, which support lightweight human annotation and uncertainty-aware pseudo-labeling on unlabeled drives.

Automated segmentation of structural defects from visual inspection imagery remains challenging due to the diversity of damage types, extreme class imbalance, and the need for precise boundary delineation. This paper presents DeltaSeg, a U-shaped encoder-decoder architecture with a tiered attention strategy that integrates Squeeze-and-Excitation (SE) channel attention in the encoder, Coordinate Attention at the bottleneck and decoder, and a novel Deep Delta Attention (DDA) mechanism in the skip connections. The encoder uses depthwise separable convolutions with dilated stages to maintain spatial resolution while expanding the receptive field. Atrous Spatial Pyramid Pooling (ASPP) at the bottleneck captures multi-scale context. The DDA module refines skip connections through a dual-path scheme combining a learned delta operator for nuisance feature suppression with spatial attention gates conditioned on decoder signals. Deep supervision through multi-scale auxiliary heads further strengthens gradient flow and encourages semantically meaningful features at intermediate decoder stages. We evaluate DeltaSeg on two datasets: the S2DS dataset (7 classes) and the Culvert-Sewer Defect Dataset (CSDD, 9 classes). Across both benchmarks, DeltaSeg consistently outperforms 12 competing architectures including U-Net, SA-UNet, UNet3+, SegFormer, Swin-UNet, EGE-UNet, FPN, and Mobile-UNETR, demonstrating strong generalization across damage types, imaging conditions, and structural geometries.

Visual state-space models (SSMs) are increasingly promoted as efficient alternatives to Vision Transformers, yet their practical advantages remain unclear under fair comparison because existing studies rarely isolate encoder effects from decoder and training choices. We present a strictly controlled benchmark of representative visual SSM families, including VMamba, MambaVision, and Spatial-Mamba, for remote-sensing semantic segmentation, in which only the encoder varies across experiments. Evaluated on LoveDA and ISPRS Potsdam under a unified 4-stage feature interface and a fixed lightweight decoder, the benchmark reveals three main findings, intra-family scaling yields only modest gains, cross-domain generalization is strongly asymmetric, and boundary delineation is the dominant failure mode under distribution shift. Although visual SSMs achieve favorable accuracy-efficiency trade-offs relative to the controlled CNN and Transformer baselines considered here, the results suggest that future improvements are more likely to come from robustness-oriented design and boundary-aware decoding than from encoder scaling alone. By isolating encoder behavior under a unified and reproducible protocol, this study establishes a practical reference benchmark for the design and evaluation of future Mamba-based segmentation backbones

Automated polyp segmentation is critical for early colorectal cancer detection and its prevention, yet remains challenging due to weak boundaries, large appearance variations, and limited annotated data. Lightweight segmentation models such as U-Net, U-Net++, and PraNet offer practical efficiency for clinical deployment but struggle to capture the rich semantic and structural cues required for accurate delineation of complex polyp regions. In contrast, large Vision Foundation Models (VFMs), including SAM, OneFormer, Mask2Former, and DINOv2, exhibit strong generalization but transfer poorly to polyp segmentation due to domain mismatch, insufficient boundary sensitivity, and high computational cost. To bridge this gap, we propose \textit{\textbf{LiteBounD}, a \underline{Li}gh\underline{t}w\underline{e}ight \underline{Boun}dary-guided \underline{D}istillation} framework that transfers complementary semantic and structural priors from multiple VFMs into compact segmentation backbones. LiteBounD introduces (i) a dual-path distillation mechanism that disentangles semantic and boundary-aware representations, (ii) a frequency-aware alignment strategy that supervises low-frequency global semantics and high-frequency boundary details separately, and (iii) a boundary-aware decoder that fuses multi-scale encoder features with distilled semantically rich boundary information for precise segmentation. Extensive experiments on both seen (Kvasir-SEG, CVC-ClinicDB) and unseen (ColonDB, CVC-300, ETIS) datasets demonstrate that LiteBounD consistently outperforms its lightweight baselines by a significant margin and achieves performance competitive with state-of-the-art methods, while maintaining the efficiency required for real-time clinical use. Our code is available at https://github.com/lostinrepo/LiteBounD.

WeatherSeg, an advanced semi-supervised segmentation framework, addresses autonomous driving's environmental perception challenges in adverse weather while reducing annotation costs. This framework integrates a Dual Teacher-Student Weight-Sharing Model (DTSWSM) that enables knowledge distillation from weather-affected images, and a Classifier Weight Updating Attention Mechanism (CWUAM) that dynamically adjusts classifier weights based on environmental attributes. Comprehensive evaluations demonstrate that WeatherSeg significantly outperforms baseline models in both accuracy and robustness across various weather conditions, including clear, rainy, cloudy, and foggy scenarios, establishing it as an effective solution for all-weather semantic segmentation in autonomous driving and related applications.

Semantic segmentation in hyperbolic space enables compact modeling of hierarchical structure while providing inherent uncertainty quantification. Prior approaches predominantly rely on the Poincaré ball model, which suffers from numerical instability, optimization, and computational challenges. We propose a novel, tractable, architecture-agnostic semantic segmentation framework (pixel-wise and mask classification) in the hyperbolic Lorentz model. We employ text embeddings with semantic and visual cues to guide hierarchical pixel-level representations in Lorentz space. This enables stable and efficient optimization without requiring a Riemannian optimizer, and easily integrates with existing Euclidean architectures. Beyond segmentation, our approach yields free uncertainty estimation, confidence map, boundary delineation, hierarchical and text-based retrieval, and zero-shot performance, reaching generalized flatter minima. We introduce a novel uncertainty and confidence indicator in Lorentz cone embeddings. Further, we provide analytical and empirical insights into Lorentz optimization via gradient analysis. Extensive experiments on ADE20K, COCO-Stuff-164k, Pascal-VOC, and Cityscapes, utilizing state-of-the-art per-pixel classification models (DeepLabV3 and SegFormer) and mask classification models (mask2former and maskformer), validate the effectiveness and generality of our approach. Our results demonstrate the potential of hyperbolic Lorentz embeddings for robust and uncertainty-aware semantic segmentation. Code is available at https://github.com/mxahan/Lorentz_semantic_segmentation.

Accurate automatic brain tumor segmentation in Low and Middle-Income (LMIC) countries is challenging due to the lack of defined national imaging protocols, diverse imaging data, extensive use of low-field Magnetic Resonance Imaging (MRI) scanners and limited health-care resources. As part of the Brain Tumor Segmentation (BraTS) Africa 2025 Challenge, we applied topology refinement to the state-of-the-art segmentation models like nnU-Net, MedNeXt, and a combination of both. Since the BraTS-Africa dataset has low MRI image quality, we incorporated the BraTS 2025 challenge data of pre-treatment adult glioma (Task 1) to pre-train the segmentation model and use it to fine-tune on the BraTS-Africa dataset. We added an extra topology refinement module to address the issue of deformation in prediction that arose due to topological error. With the introduction of this module, we achieved a better Normalized Surface Distance (NSD) of 0.810, 0.829, and 0.895 on Surrounding Non-Enhancing FLAIR Hyperintensity (SNFH) , Non-Enhancing Tumor Core (NETC) and Enhancing tumor (ET).

Multimodal remote sensing data provide complementary information for semantic segmentation, but in real-world deployments, some modalities may be unavailable due to sensor failures, acquisition issues, or challenging atmospheric conditions. Existing multimodal segmentation models typically address missing modalities by learning a shared representation across inputs. However, this approach can introduce a trade-off by compromising modality-specific complementary information and reducing performance when all modalities are available. In this paper, we tackle this limitation with CBC-SLP, a multimodal semantic segmentation model designed to preserve both modality-invariant and modality-specific information. Inspired by the theoretical results on modality alignment, which state that perfectly aligned multimodal representations can lead to sub-optimal performance in downstream prediction tasks, we propose a novel structured latent projection approach as an architectural inductive bias. Rather than enforcing this strategy through a loss term, we incorporate it directly into the architecture. In particular, to use the complementary information effectively while maintaining robustness under random modality dropout, we structure the latent representations into shared and modality-specific components and adaptively transfer them to the decoder according to the random modality availability mask. Extensive experiments on three multimodal remote sensing image sets demonstrate that CBC-SLP consistently outperforms state-of-the-art multimodal models across full and missing modality scenarios. Besides, we empirically demonstrate that the proposed strategy can recover the complementary information that may not be preserved in a shared representation. The code is available at https://github.com/iremulku/Multispectral-Semantic-Segmentation-via-Structured-Latent-Projection-CBC-SLP-.

Segmentation is a critical task in computational pathology, as it identifies areas affected by disease or abnormal growth and is essential for diagnosis and treatment. However, acquiring high-quality pixel-level supervised segmentation data requires significant workload demands from experienced pathologists, limiting the application of deep learning. To overcome this challenge, relaxing the label conditions to image-level classification labels allows for more data to be used and more scenarios to be enabled. One approach is to leverage Class Activation Map (CAM) to generate pseudo pixel-level annotations for semantic segmentation with only image-level labels. However, this method fails to thoroughly explore the essential characteristics of pathology images, thus identifying only small areas that are insufficient for pseudo masking. In this paper, we propose a novel shuffle-based feedback learning method inspired by curriculum learning to generate higher-quality pseudo-semantic segmentation masks. Specifically, we perform patch level shuffle of pathology images, with the model adaptively adjusting the shuffle strategy based on feedback from previous learning. Experimental results demonstrate that our proposed approach outperforms state-of-the-arts on three different datasets.

Tristructural isotropic (TRISO)-coated particle fuels undergo dimensional changes and chemical reactions during high-temperature neutron irradiation. Post-irradiation materialography helps understand processes that impact fuel performance, such as coating integrity and fission product retention. Conventionally, experts manually evaluate features in thousands of cross sections of sub-mm-sized samples, which is tedious and subjective. In this work, we propose UA-Net, a deep learning framework that segments five characteristic regions of TRISO fuel micrographs and generates an uncertainty map for predictions. The model uses a multi-stage pretraining strategy, starting with general image representations learned from ImageNet, followed by fine-tuning on TRISO micrographs from various irradiation experiments and AGR-5/6/7 particle cross sections. A meta-model for uncertainty prediction is integrated to identify small defects in TRISO images. UA-Net was evaluated on a test set of 102 images, achieving mean Intersection over Union (mIoU) and mean Precision (mP) of 95.5% and 97.3%, respectively. The meta-model achieved a specificity of 91.8% and sensitivity of 93.5%, demonstrating strong performance in detecting misclassifications. The model was also applied to new TRISO images for qualitative evaluation, showing high accuracy in extracting layer regions.

Building extraction from optical Remote Sensing (RS) imagery suffers from performance degradation under real-world hazy and low-light conditions. However, existing optical methods and benchmarks focus primarily on ideal clear-weather conditions. While SAR offers all-weather sensing, its side-looking geometry causes geometric distortions. To address these challenges, we introduce HaLoBuilding, the first optical benchmark specifically designed for building extraction under hazy and low-light conditions. By leveraging a same-scene multitemporal pairing strategy, we ensure pixel-level label alignment and high fidelity even under extreme degradation. Building upon this benchmark, we propose HaLoBuild-Net, a novel end-to-end framework for building extraction in adverse RS scenarios. At its core, we develop a Spatial-Frequency Focus Module (SFFM) to effectively mitigate meteorological interference on building features by coupling large receptive field attention with frequency-aware channel reweighting guided by stable low-frequency anchors. Additionally, a Global Multi-scale Guidance Module (GMGM) provides global semantic constraints to anchor building topologies, while a Mutual-Guided Fusion Module (MGFM) implements bidirectional semantic-spatial calibration to suppress shallow noise and sharpen weather-induced blurred boundaries. Extensive experiments demonstrate that HaLoBuild-Net significantly outperforms state-of-the-art methods and conventional cascaded restoration-segmentation paradigms on the HaLoBuilding dataset, while maintaining robust generalization on WHU, INRIA, and LoveDA datasets. The source code and datasets are publicly available at: https://github.com/AeroVILab-AHU/HaLoBuilding.

This paper proposes a novel privacy-preserving semantic segmentation method that can use independent keys for each client and image. In the proposed method, the model creator and each client encrypt images using locally generated keys, and model training and inference are conducted on the encrypted images. To mitigate performance degradation, an image encryption method is applied to model training in addition to the generation of test images. In experiments, the effectiveness of the proposed method is confirmed on the Cityscapes dataset under the use of a vision transformer-based model, called SETR.

Grain-edge segmentation (GES) and lithology semantic segmentation (LSS) are two pivotal tasks for quantifying rock fabric and composition. However, these two tasks are often treated separately, and the segmentation quality is implausible albeit expensive, time-consuming, and expert-annotated datasets have been used. Recently, foundation models, especially the Segment Anything Model (SAM), have demonstrated impressive robustness for boundary alignment. However, directly adapting SAM to joint GES and LSS is nontrivial due to 1) severe domain gap induced by extinction-dependent color variations and ultra-fine grain boundaries, and 2) lacking novel modules for joint learning on multi-angle petrographic image stacks. In this paper, we propose Petro-SAM, a novel two-stage, multi-task framework that can achieve high-quality joint GES and LSS on petrographic images. Specifically, based on SAM, we introduce a Merge Block to integrate seven polarized views, effectively solving the extinction issue. Moreover, we introduce multi-scale feature fusion and color-entropy priors to refine the detection.

Weakly supervised semantic segmentation aims to achieve pixel-level predictions using image-level labels. Existing methods typically entangle semantic recognition and object localization, which often leads models to focus exclusively on sparse discriminative regions. Although foundation models show immense potential, many approaches still follow the tightly coupled optimization paradigm, struggling to effectively alleviate pseudo-label noise and often relying on time-consuming multi-stage retraining or unstable end-to-end joint optimization. To address the above challenges, we present ModuSeg, a training-free weakly supervised semantic segmentation framework centered on explicitly decoupling object discovery and semantic assignment. Specifically, we integrate a general mask proposer to extract geometric proposals with reliable boundaries, while leveraging semantic foundation models to construct an offline feature bank, transforming segmentation into a non-parametric feature retrieval process. Furthermore, we propose semantic boundary purification and soft-masked feature aggregation strategies to effectively mitigate boundary ambiguity and quantization errors, thereby extracting high-quality category prototypes. Extensive experiments demonstrate that the proposed decoupled architecture better preserves fine boundaries without parameter fine-tuning and achieves highly competitive performance on standard benchmark datasets. Code is available at https://github.com/Autumnair007/ModuSeg.

Remote sensing segmentation in real deployment is inherently continual: new semantic categories emerge, and acquisition conditions shift across seasons, cities, and sensors. Despite recent progress, many incremental approaches still treat training steps as isolated updates, which leaves representation drift and forgetting insufficiently controlled. We present ProtoFlow, a time-aware prototype dynamics framework that models class prototypes as trajectories and learns their evolution with an explicit temporal vector field. By jointly enforcing low-curvature motion and inter-class separation, ProtoFlow stabilizes prototype geometry throughout incremental learning. Experiments on standard class- and domain-incremental remote sensing benchmarks show consistent gains over strong baselines, including up to 1.5-2.0 points improvement in mIoUall, together with reduced forgetting. These results suggest that explicitly modeling temporal prototype evolution is a practical and interpretable strategy for robust continual remote sensing segmentation. Open-source code:https://github.com/dudududke/protoflow.

Multimodal semantic segmentation has shown great potential in leveraging complementary information across diverse sensing modalities. However, existing approaches often rely on carefully designed fusion strategies that either use modality-specific adaptations or rely on loosely coupled interactions, thereby limiting flexibility and resulting in less effective cross-modal coordination. Moreover, these methods often struggle to balance efficient information exchange with preserving the unique characteristics of each modality across different modality combinations. To address these challenges, we propose CrossWeaver, a simple yet effective multimodal fusion framework for arbitrary-modality semantic segmentation. Its core is a Modality Interaction Block (MIB), which enables selective and reliability-aware cross-modal interaction within the encoder, while a lightweight Seam-Aligned Fusion (SAF) module further aggregates the enhanced features. Extensive experiments on multiple multimodal semantic segmentation benchmarks demonstrate that our framework achieves state-of-the-art performance with minimal additional parameters and strong generalization to unseen modality combinations.

Image-based plant phenotyping depends on dense structural understanding of crops, yet pixel-level annotation remains expensive across species, organs, growth stages, and field conditions. General-purpose vision foundation models offer a natural route to label efficiency, but their web-scale pretraining objectives transfer weakly to agricultural imagery, where semantics are often determined by fine organ geometry inside repetitive, texture-dominated scenes. We introduce SPROUT, a diffusion foundation model for multi-crop plant phenotyping. SPROUT learns from 2.6 million unlabeled open-field images (MCD-2.6M) using a pixel-space Diffusion Transformer, and selects transferable features with a label-free effective-rank criterion over denoising timesteps. This design shifts pretraining from crop-based invariance to structure-preserving denoising, making the representation better aligned with dense phenotyping tasks. We evaluate SPROUT across dense phenotyping tasks, including organ segmentation, crop-weed parsing, depth estimation, and counting. SPROUT consistently improves over strong web-pretrained baselines, with the largest gains on dense structural prediction, and shows favorable label and compute efficiency compared with general-purpose and crop-specific foundation models. The source code and MCD-2.6M dataset are publicly available.

Deep learning underlies most modern approaches and tools in computer vision, including biomedical imaging. However, for interactive semantic segmentation (often called pixel classification in this context) and interactive object-level classification (object classification), feature-based shallow learning remains widely used. This is due to the diversity of data in this domain, the lack of large pretraining datasets, and the need for computational and label efficiency. In contrast, state-of-the-art tools for many other vision tasks in microscopy - most notably cellular instance segmentation - already rely on deep learning and have recently benefited substantially from vision foundation models (VFMs), particularly SAM. Here, we investigate whether VFMs can also improve pixel and object classification compared to current approaches. To this end, we evaluate several VFMs, including general-purpose models (SAM, SAM2, SAM3, DINOv3) and domain-specific ones ($μ$SAM, PathoSAM, KRONOS), in combination with shallow learning and attentive probing on five diverse and challenging datasets. Our results demonstrate consistent improvements over hand-crafted features and provide a clear pathway toward practical improvements. Furthermore, our study establishes a benchmark for VFMs in microscopy and informs future developments in this area.

Semantic segmentation for uncrewed aerial vehicles (UAVs) is fundamental for aerial scene understanding, yet existing RGB and RGB-T datasets remain limited in scale, diversity, and annotation efficiency due to the high cost of manual labeling and the difficulties of accurate RGB-T alignment on off-the-shelf UAVs. To address these challenges, we propose a scalable geometry-driven 2D-3D-2D paradigm that leverages multi-view redundancy in high-overlap aerial imagery to automatically propagate labels from a small subset of manually annotated RGB images to both RGB and thermal modalities within a unified framework. By lifting less than 3% of RGB images into a semantic 3D point cloud and rendering it into all views, our approach enables dense pseudo ground-truth generation across large image collections, automatically producing 97% of RGB labels and 100% of thermal labels while achieving 91% and 88% annotation accuracy without any 2D manual refinement. We further extend this 2D-3D-2D paradigm to cross-modal image registration, using 3D geometry as an intermediate alignment space to obtain fully automatic, strong pixel-level RGB-T alignment with 87% registration accuracy and no hardware-level synchronization. Applying our framework to existing geo-referenced aerial imagery, we construct SegFly, a large-scale benchmark with over 20,000 high-resolution RGB images and more than 15,000 geometrically aligned RGB-T pairs spanning diverse urban, industrial, and rural environments across multiple altitudes and seasons. On SegFly, we establish the Firefly baseline for RGB and thermal semantic segmentation and show that both conventional architectures and vision foundation models benefit substantially from SegFly supervision, highlighting the potential of geometry-driven 2D-3D-2D pipelines for scalable multi-modal aerial scene understanding. Data and Code available at https://github.com/markus-42/SegFly.

Semantic segmentation across visual modalities such as 3D point clouds and panoramic images remains a challenging task, primarily due to the scarcity of annotated data and the limited adaptability of fixed-label models. In this paper, we present JOPP-3D, an open-vocabulary segmentation framework that jointly leverages panoramic and point cloud data to enable language-driven scene understanding. We convert RGB-D panoramic images into their corresponding wide field-of-view tangential perspectives and 3D point clouds, then use these modalities to extract and align foundational vision-language features. This allows natural language querying to generate semantic masks on both input modalities. Experimental evaluation on the Stanford-2D-3D-s and ToF-360 datasets demonstrates the capability of JOPP-3D to produce coherent and semantically meaningful segmentations across panoramic and 3D domains. Our proposed method achieves a significant improvement compared to the SOTA in open and closed vocabulary 2D and 3D semantic segmentation.

Glass surface segmentation from RGB images is a challenging task, with a number of applications in robotics and scene understanding. As glass lacks coherent visual characteristics, rich context and semantic information is crucial for accurate segmentation. Consequently, prior works on the task have explored utilization of foundation models and separate semantic backbones. This paper presents a novel dual-backbone architecture for glass segmentation, applying a frozen foundation model backbone in parallel with a learned backbone trained on task-specific segmentation data. The learned backbone enables the network to specialize to glass related visual clues, while preserving the general visual feature representations of the foundation model. The hierarchical multi-scale features acquired from the dual-backbone are compressed and decoded into segmentation masks. Benchmarking of the architecture was carried out on four commonly used glass segmentation datasets, achieving state-of-the-art results. Ablation studies highlight the performance gains of the dual-backbone design and demonstrate the generalizability of the architecture with different backbone choices. The model also has a competitive inference speed compared to the previous state-of-the-art method, and surpasses it when using a lighter backbone variant. The implementation source code and model weights are available at: https://github.com/ojalar/lgnet.

Geo-Foundation Models (GFMs) have been evaluated across diverse Earth observation tasks and domains, showing strong potential to produce reliable maps even with sparse labels. However, systematic benchmarking of GFMs for Cryosphere applications remains limited, primarily because suitable evaluation datasets are scarce. We address this gap by introducing Cryo-Bench, a benchmark comprising six semantic segmentation datasets covering five cryospheric components: supraglacial debris, glacial lakes under two sensing configurations, sea ice, calving fronts and Antarctic ice-shelf extent. The benchmark includes multispectral, RGB, and synthetic aperture radar observations from regions underrepresented in existing pretraining archives. We evaluate thirteen GFMs alongside U-Net and Vision Transformer baselines trained from scratch under a unified evaluation protocol. With frozen encoders, the U-Net achieves the highest six-dataset average mean intersection over union (mIoU) of 68.22%, slightly exceeding TerraMind (67.86%). However, the paired difference of 0.36 percentage points has a 95% confidence interval of [-0.15, +0.89], indicating that the observed ordering is not statistically significant. Fine-tuning with a fixed learning rate produces mixed outcomes, with leading models such as TerraMind and DOFA experiencing declines in average mIoU (-1.2 and -1.7). In contrast, learning-rate optimization substantially improves fine-tuning performance: DOFA reaches 93.97% mIoU on the RGB glacial lake task, ranking the U-Net fourth, while Scale-MAE and GFM-Swin surpass U-Net on calving fronts. In the few-shot setting, five GFMs outperform U-Net, retaining 91.1% of their full-label accuracy compared with 86.1% for U-Net.

Panoramic dense-prediction models, spanning semantic segmentation and depth estimation, are typically trained under a strict gravity-aligned assumption. Real-world captures, however, routinely violate it: handheld devices jitter and aerial platforms change attitude, so the camera is rarely upright. Under such 3D reorientation, standard spherical Transformers overfit global latitude cues and collapse. We introduce SO3UFormer, an architecture that learns intrinsic spherical features largely decoupled from the underlying coordinate frame, through three geometric components: (1) removing absolute latitude encoding, which breaks the dependence on the gravity axis; (2) quadrature-consistent spherical attention, which corrects for non-uniform sampling density; and (3) a gauge-aware relative positional bias built from local tangent-plane angles rather than global axes. A logit-space \emph{SO(3)}-consistency regularizer, used only during training, further suppresses residual discretization effects. To benchmark robustness, we introduce Pose35, a variant of Stanford2D3D perturbed by random rotations within $\pm 35^\circ$, and evaluate under a full, arbitrary \emph{SO(3)} stress test. There, the baseline SphereUFormer collapses from 67.53 \emph{mIoU} on Pose35 to 25.26 under the full \emph{SO(3)} test, whereas SO3UFormer reaches 72.03 on Pose35 and retains 70.67 under the same test. Similarly, on a second real-world dataset (Matterport3D) for segmentation and on panoramic depth estimation, SO3UFormer remains essentially rotation-invariant while the gravity-anchored baseline again loses most of its accuracy. Code and models are available at https://github.com/zhuqinfeng1999/SO3UFormer.

X-Ray Computed Tomography (XCT) is a compelling tool in experimental mechanics, capable of non-destructively extracting information pertaining to the internal morphology of materials. For materials with random heterogeneous morphology such as concrete, such information is of particular relevance since it allows for studies of morphology-related behaviour and for predictive modelling. Nevertheless, XCT images require semantic segmentation for practical usage. Here, concrete poses a unique challenge due to the similar X-ray attenuation coefficients of aggregates and mortar, which result in low contrast between the two phases in the ensuing XCT images. As such, purely intensity-dependent semantic segmentation tools remain unfeasible. While vision transformers (ViTs) and convolutional neural networks (CNNs) are proven techniques for semantic segmentation in such challenging cases, they typically require labelled training data, which is often unavailable for concrete or resource-intensive to obtain, thereby limiting their relevance. To address this challenge, a self-annotation technique is presented here that leverages superpixel algorithms to identify perceptually similar local regions in an image and relates them to the global context by utilizing the receptive field of a CNN-based model. This enables the model to learn a global-local relationship in the images and facilitates the identification of semantically similar structures. When evaluated against manually annotated ground truth on out-of-distribution data, the proposed methodology consistently outperformed direct greyscale thresholding across all pertinent metrics, demonstrating improved discernibility between aggregates and mortar, and providing the most favourable balance of sensitivity and precision for aggregate-phase identification.