Animal Behavior Analysis
Momentum
3 papers in the last four weeks, against 2 the four weeks before. 0.0% of all new papers.
Latest papers 19
We describe the BossouChimpanzee video dataset, a unique long-term visual record of wild chimpanzees at an outdoor laboratory for field experiments in Bossou, Guinea, spanning three decades (1988-2018) and comprising over 1,200 hours of continuous video recordings collected through collaborative fieldwork and research. In this paper, we outline the history and scientific contributions of the experimental paradigm and video archive, provide key statistics and details on the structure of the main video dataset, and release an initial ~74h snapshot, BossouChimpanzee70h, covering 23 identified individuals focused on chimpanzee individual and action recognition, ahead of the full video resource. This dataset represents a valuable resource for cognitive and behavioural research in ethology and a rich benchmark for training and evaluating machine learning models on audiovisual data from the wild.
How much of fly walking is written in the wiring?
Connectome models of the fly nerve cord generate walking-like motor rhythms, but oscillation alone does not show that the specific wiring matters. Here we provide, to our knowledge, the first test of which features of motor output depend on the specific wiring. We simulated the leg motor systems of two independent Drosophila connectomes, with synapse counts as fixed weights and glutamatergic synapses treated as inhibitory, and compared each with six families of rewired networks that preserve progressively more of its structure, using pre-registered criteria. We find that rhythm is generic but antagonist coordination is not: many rewired networks were more rhythmic than the real ones, yet the real wiring coordinated antagonistic motor pools more strongly than every rewired network, most of all at the thorax--coxa joint. We trace this specificity to how premotor input is allocated between antagonistic pools. Both connectomes carry Sherrington's reciprocal innervation---neurons that excite one pool inhibit its antagonist---and no rewired network does. Reassigning premotor inputs between the pools abolished coordination even when motor neurons' typical input strength changed little (all pre-registered criteria met in one connectome; same direction in the other). Coordination, not rhythm, therefore reveals whether a connectome model's wiring matters.
Positional choice and robust collective behavior in fish schools: biohybrid experiments and modeling
Collective behavior of fish schools is usually modeled on the assumption that each individual follows specific rules of motion that depend on its position and velocity relative to its neighbors. Although these models reproduce many schooling patterns observed in nature, it remains unclear whether the assumed rules are realistic at the individual level. To address this question, we first analyzed a set of experiments in which a live fish interacted with four moving robotic fish in a tank, and measured the time it spent in each position relative to the robots. We then simulated this experiment, replacing the fish with an agent, and assessed the extent to which classical models agree with the experimental observations. An extensive exploration of the parameter space showed that these models closely matched the experimental observations, with a very specific choice of parameters. However, they were highly sensitive to the parameter values: a minor perturbation caused them to fail completely. To resolve this, we propose a new model that incorporates an additional exploratory term characterizing the agent's positional preference at every moment. This model proved robust to small errors in the parameters while successfully replicating the experiments. Furthermore, when generalised to multiple fish, the model reproduced schooling behaviour and common schooling patterns, while also exhibiting exploratory behaviour at both the individual and the school level. This shows that social cohesion coexists with individual exploratory behaviour, and that realistic models of collective behaviour should account for both social interactions and this exploratory component.
WildFin: An In-the-Wild Dataset for Fish Behavioral Recognition
Recent advances in field technology have led to a massive influx of in-the-wild video data for ecological science. The primary bottleneck in leveraging this data is the high cost of expert annotation. While computer vision offers a potential solution, current models frequently fail when deployed in complex marine environments. To characterize these failures, we introduce WildFin, a novel benchmark for fish behavior recognition collected and annotated by ecologists. WildFin spans two critical real-world paradigms: stationary cameras monitoring groups of fish and dynamic divers following individual subjects. The dataset represents a massive curation effort, involving 1,350 hours of fieldwork and 600 hours of expert annotation to produce 9 hours of behavioral data with over 2 million frame-by-frame labels. We benchmark modern vision foundation models and quantify tradeoffs between static and spatiotemporal architectures, revealing the substantial gap that remains between current model capabilities and the demands of real-world underwater behavioral analysis. Project website: https://team-wildfin.github.io/.
A Hybrid Framework of Vision Transformer and Gated Recurrent Unit for Detection of Mosquito Diseases
Identifying dengue virus-infected mosquitoes from control mosquitoes is a major challenge in analyzing mosquito locomotion behavior due to the small size and complexity of the video background. Conventional AI methods are often unable to extract accurate features from video frames and produce erroneous features. In this study, a three-step framework is introduced: first, mosquitoes are identified and the background is removed using the YOLO 11M model, then visual features are extracted using the Vision Transformer (ViT), and finally the videos are classified with a convolutional GRU (ConvGRU) classifier. A comparative analysis of different models, including Recurrent Neural Network (RNN), Long Short-Term Memory (LSTM), Gated Recurrent Unit (GRU), and their convolutional versions showed that the ConvGRU model achieved the best performance; it achieved 88.88% accuracy, 84.45% precision, 82.82% recall, and 82.81% F1 score. These results demonstrate that combining convolutional models with sequence-based networks, especially in the ConvGRU model, allows the simultaneous extraction of precise spatial features and long-term temporal dependencies from mosquito movements. Finally, the proposed framework provides a reliable solution for analyzing mosquito behavior in complex environments.
Agent-Centric Animal Pose Forecasting
Understanding animal behavior at an algorithmic level -- what animals attend to, how they form internal models and plans, and how this maps to action -- remains a central challenge in neuroscience and ethology. Data-driven generative models offer a path toward this understanding. We introduce a framework for training agent-centric autoregressive models of animal behavior from tracked pose, applicable to single animals and to groups in which each agent senses and responds to its conspecifics. Our models input egocentric sensory observations and output egocentric movements, mirroring the biological constraint that animals observe and act on the world from their own reference frame. Social behavior emerges from agents independently sensing and responding to one another. This agent-centric formulation requires managing many parallel representations of the same data, along with ML-specific transformations like discretization. We release a general-purpose library focused on the composable sequences of operations that translate between these representations. We show that trained models capture the distribution of social behavior in groups of courting Drosophila, and our library includes quantitative tools for measuring fit. We demonstrate how the library supports systematic comparison across input and output representations and that it adapts straightforwardly to a new domain.
The PanAf-SBR Dataset: Social Behaviour Recognition for Wild Great Apes
Behavioural shifts in wild great ape populations, particularly the breakdown of social structures, can serve as an early indicator of population decline. Automating the detection of behaviours indicative of these shifts is therefore a critical task for conservation. Several valuable datasets have recently been introduced for the automated recognition of great ape behaviour, yet few include fine-grained social behaviour annotations, and those that do are captured either in captive settings or via aerial platforms such as UAVs. We address this gap by introducing PanAf-SBR, the first wild great ape camera trap dataset annotated with social behaviours. PanAf-SBR extends PanAf500 with 100 additional videos covering 36,063 frames. These come with 81,096 annotations including bounding boxes, segmentation masks, intra-video identities, and seven social behaviour classes defined under the action giver and receiver convention of ChimpACT. We use this data together with the AlphaChimp architecture to establish the first benchmarks for fine-grained social behaviour recognition in wild great apes from camera trap footage. We further conduct bidirectional transfer learning experiments between PanAf-SBR and the captive ChimpACT dataset, finding that cross-dataset pre-training is highly beneficial for specific classes rather than of uniform benefit. Finally, we examine the role of background context by inverting the segmentation masks to suppress non-ape pixels.
Social-spatial dependencies for learning visual navigation
Navigation for social organisms rarely is a fully independent activity. Group structure and dynamics, as well as embodied interactions, critically influence useful behavior. Individual neural network controlled agents are trained to navigate in different social contexts, where social dependence and behavioral strategy learned is determined by relative task performance and spatial effect. Increasing high quality social information drives phase transitions from individual to following navigational strategy, and to collision avoidance in response to a crowded foraging patch. Predictable, nonstationary environmental dynamics drive behavioral hybridization between individual and social navigation, far and near the patch. Our findings challenge the approach of only inspecting individual behavior for social organisms and highlight the importance of taking a bottom-up approach in understanding how organisms behave.
K9-Bench: Evaluating Multimodal LLMs on Canine-Centric Videos
MLLMs have shown strong zero-shot capabilities across diverse inputs such as across images, video, audio, and text. A crucial, yet underexplored, application of these models lies in understanding and modeling animal-centric scenarios. As animals are integral to millions of households, benchmarking next-generation AI models on pet-focused tasks, ranging from recognizing distress signals to enabling responsive robotic companions, is essential for building AI systems that can work alongside us. We introduce K9-Bench, a novel benchmark focused on real-world domestic dog videos, specifically targeting canine action and interaction understanding via approximately 5000 question-answer pairs across 907 videos spanning 5 distinct task categories that test long-form, canine-centric multimodal reasoning in MLLMs. To create this dataset, we propose a scalable, VLM/LLM-powered data generation pipeline that automatically mines canine-centric videos from the web and curates QA pairs requiring fine-grained, multi-hop reasoning over canine actions and temporally extended interaction sequences. We implement bias mitigation strategies designed to eliminate biases introduced by VLMs during dataset curation. Through extensive experimentation, we find that frontier MLLMs exhibit limited zero-shot performance on canine-centric tasks: although state-of-the-art closed-source models outperform open-source counterparts, they still struggle with compositional reasoning over subtle posture and interaction cues spread over long horizons. We observe that generic chain-of-thought prompting provides only modest performance for such long-horizon reasoning. Beyond a novel dataset for canine activity analysis, K9-Bench provides a general-purpose dataset construction pipeline that can be adapted to other low-data domains for quantitative analysis. Our project website is available at: https://ogmenrobotics.github.io/K9Bench.
When Multi-Sensor Fusion Fails to Generalize: Cattle Posture Classification Under Animal-Level and Temporal Distribution Shift
Automated cattle posture-classification systems frequently report near-perfect accuracy, yet their robustness under realistic deployment conditions remains largely unknown. In particular, it is unclear whether multimodal sensor fusion improves generalisation or leads models to rely on context-specific signals that fail under distribution shift. Here, we evaluate the robustness of automated posture classification (lying versus standing) using collar accelerometers, rumen-bolus sensors, and environmental measurements collected from a pasture-based beef cattle herd across two consecutive years (2024-2025). XGBoost served as the primary model, with Logistic Regression, Random Forest, and Long Short-Term Memory networks evaluated as comparative baselines. Model robustness was assessed under progressively more stringent evaluation protocols, ranging from conventional random train-test splits to leave-one-animal-out validation and cross-year evaluation on an independent cohort of previously unseen animals recorded one year later. While multimodal models achieved strong within-year performance (macro-F1 0.94), the performance declined substantially under cross-year evaluation (macro-F1 0.49). Explainability analysis revealed persistent reliance on rumen-bolus activity and environmental variables even when predictive performance deteriorated. Distribution-shift diagnostics further confirmed substantial differences in feature distributions between recording years. Our findings demonstrate that commonly used evaluation protocols can substantially overestimate real-world performance and that multimodal sensor fusion may reduce, rather than improve, robustness under temporal distribution shift. More broadly, the results highlight that benchmark accuracy alone is insufficient to assess deployment readiness and underscore the need for robustness-centred evaluation in livestock-monitoring research.
Cross-Modal Corroboration for Annotation-Free Wildlife Monitoring
Scaling wildlife monitoring for real-world conservation deployments requires automated analysis of smart sensors that operate under severe annotation scarcity. We propose leveraging expert knowledge of species activity patterns as an annotation-free validation signal for multimodal monitoring pipelines. We operationalize agreement as the alignment of independently derived hourly activity curves both with each other and with published behavioral priors-a three-way convergence that rules out shared-data confounds and dataset-internal correlation as alternative explanations. Our vision pipeline combines zero-shot species detection via BioCLIP 2, sliced inference to handle deployment-constrained camera positioning, and geometry-based geographic localization from camera trap imagery. Our acoustic pipeline detects species vocalizations via a fine-tuned classifier. We validate the pipeline on a breeding herd of Milu deer and demonstrate that both modalities independently recover activity patterns consistent with known deer behavioral ecology with minimal manual annotation. The framework applies to species detectable in both visual and acoustic modalities for which behavioral priors are documented in the literature, suggesting a practical path toward self-validating wildlife-monitoring pipelines at conservation scale.
BEAST3D: Animal behavioral analysis and neural encoding from multi-view video via Gaussian splatting
Multi-view video recordings are increasingly used to capture the 3D movements of animals in experimental settings, yet extracting rich 3D representations from these recordings remains challenging. Supervised pose estimation requires extensive manual annotation, while general-purpose 3D reconstruction models trained on generic scene datasets fail on the specialized imagery and sparse-view setting of laboratory experiments. We address these limitations with BEAST3D, a self-supervised pretraining framework that learns 3D visual representations from unlabeled, calibrated multi-view video. BEAST3D uses a vision transformer to predict 3D Gaussian splats that reconstruct held-out views through differentiable rendering, while simultaneously segmenting the animal from the background. BEAST3D reconstructs 3D structure with as few as four views by conditioning directly on known camera parameters--unlike general-purpose models, which must estimate camera geometry from dense overlapping viewpoints that are seldom available in lab settings. Through comprehensive evaluation across four species, we demonstrate that BEAST3D produces rich, viewpoint-invariant features that transfer effectively to three downstream tasks: novel view synthesis, which validates the quality of the learned 3D representations; multi-view pose estimation, which provides the sparse keypoint trajectories widely used in behavioral analysis; and neural encoding, which relates 3D behavioral features to simultaneously recorded neural activity. BEAST3D thus establishes a versatile framework for behavioral analysis that leverages 3D structure in modern multi-view laboratory recordings.
PlayClass: Automated Play Behaviour Classification in Poultry
Automated monitoring of animal welfare has largely targeted negative indicators, leaving positive welfare behaviours such as play underexplored. To address this gap, we present PlayClass, a pipeline for play-behaviour classification in poultry from top-down pen video. The pipeline leverages long-duration tracking with SAM 3 via YOLO-guided chunk boundaries to minimise identity errors in point-based prompting, and frozen embeddings from image and video foundation models for play action classification. Although handcrafted motion features from tracked masks alone achieved competitive accuracy, V-JEPA 2.1 consistently outperformed all other backbones across model scales, reaching 77.0 macro-averaged F when combined with handcrafted features. Despite this result, the dataset remains challenging due to play sub-types sharing similar kinematic profiles with non-play and inter-bird occlusion. Overall, our work provides encouraging evidence towards automated frameworks for play behaviour classification in poultry.
GEESE: Genotype-aware End-to-End Spatio-temporal Embedding for Behavioral Phenotyping
Behavioral phenotyping of genetic animal models currently requires labor-intensive manual feature engineering that limits reproducibility and scalability. We present GEESE, an end-to-end deep learning framework that learns behavioral representations directly from 3D pose dynamics without hand-crafted features. Using a pretrained time series foundation model, we encode movement sequences into a behavioral manifold that supports both behavior classification and genotype prediction. Evaluated across three autism-associated genetic models (CNTNAP2, CHD8, FMR1), our deep learning approach surpasses hand-crafted feature baselines in both tasks, revealing that learned representations capture genotype-specific behavioral signatures. The framework generalizes across genetic backgrounds, and an all-cohort model identifies both genetic background and genotype from movement patterns alone. We further provide HONK, an interactive intelligent tool enabling researchers without programming expertise to perform behavioral phenotyping from pose data through natural language interaction.
A Mechanistic Model for Collective Motion from Sensorimotor Regularities
Collective behavior in animals has long been modeled through self-propelled particle models, which reproduce striking group-level phenomena through abstract interaction forces. Yet these models are fundamentally descriptive: they leave open the question of how collective behavior is actually produced. Recent empirical work makes this gap concrete: locusts do not align with neighbors, sensory and cognitive mechanisms mediate interaction instead. A mechanistic model must therefore operate at the sensorimotor level, grounded in what individual organisms can actually perceive, estimate, and physically execute. We present such a model based on a modeling framework from robotics, extended here to collective motion. Each agent perceives neighbors through bearing and apparent-size cues within a limited field of view, maintains uncertain internal state estimates, and selects actions through gradient descent on a desired social distance -- without any prescribed interaction forces. This simple model produces diverse collective behaviors including polarized motion, milling, ring formations, and subgroup fragmentation. A global sensitivity analysis shows that behavioral transitions are governed by sensorimotor parameters corresponding to measurable biological quantities: field of view geometry, sensory noise, turning agility, and memory. Collective behavior can therefore be understood as the emergent outcome of interacting sensorimotor regularities, and differences across species as the emergent outcome of differences in embodiment and environment.
Meow-Omni 1: A Multimodal Large Language Model for Feline Ethology
Deciphering animal intent is a fundamental challenge in computational ethology, largely because of semantic aliasing, the phenomenon where identical external signals (e.g., a cat's purr) correspond to radically different internal states depending on physiological context. Existing Multimodal Large Language Models (MLLMs) are blind to high-frequency biological time-series data, restricting them to superficial behavioural pattern matching rather than genuine latent-state reasoning. To bridge this gap, we introduce Meow-Omni 1, the first open-source, quad-modal MLLM purpose-built for computational ethology. It natively fuses video, audio, and physiological time-series streams with textual reasoning. Through targeted architectural adaptation, we integrate specialized scientific encoders into a unified backbone and formalize intent inference via physiologically grounded cross-modal alignment. Evaluated on MeowBench, a novel, expert-verified quad-modal benchmark, Meow-Omni 1 achieves state-of-the-art intent-recognition accuracy (71.16%), substantially outperforming leading vision-language and omni-modal baselines. We release the complete open-source pipeline including model weights, training framework, and the Meow-10K dataset, to establish a scalable paradigm for inter-species intent understanding and to advance foundation models toward real-world veterinary diagnostics and wildlife conservation.
Context as Prior: Bayesian-Inspired Intent Inference for Non-Speaking Agents with a Household Cat Testbed
Many agents in real-world environments cannot reliably communicate their goals through language, including household pets, pre-verbal infants, and other non-speaking embodied agents. In such settings, intent must be inferred from incomplete behavioral observations in context-rich environments. This creates a core ambiguity: observable behavior is often noisy or underspecified, while context provides strong prior information but can also induce brittle shortcut predictions if used naively. We present CatSignal, a Bayesian-inspired probabilistic framework for multimodal intent inference that models spatial context as a prior-like constraint and behavioral observations as evidence. Rather than treating context as an ordinary input feature, our method uses a context-gated Product-of-Experts formulation to compute posterior-like intent distributions from context, pose dynamics, and acoustic cues. We instantiate this formulation in a household cat setting as a focused proof-of-concept for intent inference in non-speaking agents. Under Leave-One-Video-Out evaluation on a multimodal domestic cat dataset, the proposed prior-guided fusion achieves the best overall accuracy of 77.72%, outperforming feature concatenation (71.83%) and stronger late-fusion baselines. More importantly, it substantially reduces context-driven shortcut failures in ambiguous cases. While simpler fusion strategies remain competitive in Macro-F1 and selective prediction, the proposed model provides the strongest overall accuracy and the best suppression of context-based shortcut collapse.
Motion-Driven Multi-Object Tracking of Model Organisms in Space Science Experiments
Automated animal behavior analysis relies on long-term, interpretable individual trajectories; however, multi-animal tracking in space science experimental videos remains highly challenging due to weak appearance cues, low-quality imaging, complex maneuvering behaviors, and frequent interactions. To address this problem, we first construct the SpaceAnimal-MOT dataset to characterize the motion complexity and long-term identity preservation challenges in biological videos acquired under microgravity conditions. We then propose ART-Track (Adaptive Robust Tracking), a motion-driven tracking framework tailored to this setting. Specifically, multi-model motion estimation is introduced to handle abrupt maneuvers and nonlinear motion, motion-state-driven association is designed to reduce identity switches under dense interactions and temporary mismatch, and uncertainty-adaptive fusion is used to dynamically balance spatial and motion cues when prediction reliability varies. Experimental results show that ART-Track significantly reduces identity switches on zebrafish and fruitfly sequences, while maintaining more stable association under occlusion, deformation, and high-density interactions, thereby providing a more reliable tracking foundation for downstream quantitative behavior analysis. The code is publicly available at https://github.com/yyy7777777/ART_TRACK/tree/main.
MTT-Bench: Predicting Social Dominance in Mice via Multimodal Large Language Models
Understanding social dominance in animal behavior is critical for neuroscience and behavioral studies. In this work, we explore the capability of Multimodal Large Language Models(MLLMs) to analyze raw behavioral video of mice and predict their dominance hierarchy. We introduce MTT-Bench, a novel benchmark comprising annotated videos of pairwise mouse interactions for Mouse Tube Test analysis. Building on existing MLLM architectures, we fine-tune these models to perform zero-shot inference on unseen behavioral sequences, predicting social dominance without explicit labels during testing. Our framework demonstrates promising results, showing high agreement with tube test rankings. This work opens a new direction for applying foundation models to ethology and social behavior analysis, without the need to design domain-specific models.