Hyperspectral Imaging

Illuminant estimation aims to infer scene illumination from image measurements despite intrinsic ambiguities between surface reflectance and lighting. Most existing methods operate on trichromatic RGB images and are therefore fundamentally limited by the restricted spectral information available. Hyperspectral imaging provides a much richer representation of scene radiance and has the potential to alleviate these ambiguities. However, its high dimensionality poses computational and statistical challenges. In this work, we systematically study the effect of spectral dimensionality and representation choice on illuminant estimation performance using hyperspectral data. We adopt the practical and effective Color-by-Correlation (CbC) framework as the estimation backbone and analyze its behavior under different spectral dimensionality reduction strategies. Our results offer practical insights into how hyperspectral information can be efficiently exploited for illuminant estimation and identify conditions under which compact spectral representations outperform conventional RGB-based approaches. The code is available at https://github.com/IVRL/Reduced-Spectral-Color-Constancy.

Remote sensing image fusion aims to create a high-resolution multi/hyper-spectral image from a high-resolution image with limited spectral information and a low-resolution image with abundant spectral data. Recently, deep learning (DL) techniques have shown significant effectiveness in this area. Most DL-based methods approach image fusion as a 2D problem by encoding spectral information into feature map channels. However, our research suggests that this strategy introduces notable spectral distortions. In contrast, some methods consider spectral data as an additional dimension, utilizing standard 3D convolutions to preserve spectral information. Nevertheless, in a standard 3D convolutional layer, the same set of kernels is applied across all input regions, which we have found to be sub-optimal for image fusion. Furthermore, standard 3D convolutions necessitate substantial computational resources. To address these challenges, we propose a novel convolutional paradigm called Adaptive 3D Convolution (Ada3D) for remote sensing image fusion. Ada3D applies a unique set of 3D kernels to each input voxel, enabling the capture of fine-grained details. These adaptive kernels are generated through a two-step process: (i) spatial and spectral kernels are derived from their respective image sources; (ii) these two types of kernels are then combined to form content-aware 3D kernels that effectively integrate spatial and spectral information. Additionally, adaptive biases are introduced to enhance the convolutional outcome at the voxel level. Furthermore, we incorporate the group convolution technique to reduce computational complexity. As a result, Ada3D offers full adaptivity in an efficient manner. Evaluation results across five datasets demonstrate that our method achieves SOTA performance, underscoring the superiority of Ada3D. The code is available at https://github.com/PSRben/Ada3D.

RGB-to-hyperspectral image reconstruction is a highly ill-posed inverse problem, since multiple plausible spectral distributions may correspond to the same RGB observation. Existing regression-based methods usually learn a deterministic mapping, which limits their ability to model reconstruction uncertainty and often leads to over-smoothed spectral responses. Although diffusion models provide strong distribution modeling capability, their direct application to hyperspectral reconstruction remains challenging due to the high spectral dimensionality, strong inter-band correlations, and strict requirement for spectral fidelity. To this end, we propose R2H-Diff, an efficient diffusion-based framework tailored for RGB-to-HSI reconstruction. Specifically, R2H-Diff formulates spectral recovery as a conditional iterative refinement process, enabling progressive reconstruction under RGB guidance. We proposed a Guided Spectral Refinement Module for RGB-conditioned feature fusion and a Hyperspectral-Adaptive Transposed Attention module for efficient spatial--spectral dependency modeling. Furthermore, a normalization-free denoising backbone is adopted to preserve spectral amplitude consistency, while a task-adapted linear noise schedule enables high-quality reconstruction with only five denoising steps. Extensive experiments on NTIRE2022, CAVE, and Harvard demonstrate that R2H-Diff achieves a favorable balance between reconstruction quality and computational efficiency. Notably, on NTIRE2022, R2H-Diff obtains 35.37 dB PSNR with a sub-million-parameter model of 0.58M parameters and 12.25G FLOPs, achieving the lowest model complexity among the evaluated methods while maintaining strong reconstruction fidelity.

Hyperspectral in situ sensing has shown promise in retrieving aquatic biogeochemical (BGC) parameters, such as total suspended solids, dissolved organic carbon, and total chlorophyll-a, for cost-effective monitoring of coastal water quality. However, generalising such retrieval algorithms across water bodies remains challenging, as the relationship between remote sensing reflectance (Rrs) and BGC parameters can vary considerably from one region to another due to regional distinctions in environmental conditions and biogeochemistry that lead to different BGC ranges and bio-optical properties. In this study, we propose a two-stage physics-aware meta-learning framework for retrieving coastal BGC parameters from near-surface Rrs observations. In the first stage, a bio-optical forward model is used to generate a large synthetic dataset based on an in situ bio-optical spectral library with broad representativeness of Australian coastal waters. This dataset is then used to pretrain a region-agnostic base model with meta-learning, allowing the model to learn fundamental physical relationships. In the second stage, the pretrained base model is fine-tuned for specific regions with local samples. We collected in situ hyperspectral Rrs and BGC measurements from five geographically distinct sites in Australian coastal waters. Our experimental results suggest: (1) the BGC parameters and their corresponding hyperspectral Rrs signatures exhibited clear regional distinctions among the experimental sites; (2) the synthetic dataset was physically plausible and closely aligned with real-world samples in both parameter distributions and inter-parameter correlations; (3) the proposed approach outperformed five benchmark models in BGC retrieval; and (4) time series of in situ measured and model-predicted BGC parameters showed good agreement in both magnitude and temporal dynamics.

Recovering scene color from images captured in scattering media is a fundamental inverse problem in optical imaging. Yet the problem is intrinsically ill-posed as multiple solutions can explain the same observation, and prediction error cannot be controlled without understanding the space of candidate solutions. Here, we present sufficient conditions under which color recovery in a scattering medium becomes well-posed. Observing that ill-posedness stems from (i) projection of spectral signals onto pixel intensities, and (ii) unknown medium parameters, we demonstrate that sensor improvements alone cannot resolve medium-induced distortions without additional constraints. We identify recovery patterns, cross-pixel relationships that naturally occur in images, and prove, for an ideal hyperspectral camera, that they restrict the solution to a unique candidate. This opens the door to a new class of vision algorithms grounded in first principles, enabling quantitative analysis of images in scattering environments.

Cross-scene hyperspectral image (HSI) classification stands as a fundamental research topic in remote sensing, with extensive applications spanning various fields. Owing to the inclusion of unknown categories in the target domain and the existence of domain shift across different scenes, open-set domain adaptation techniques are commonly employed to address cross-scene HSI classification. However, existing open-set cross-scene HSI classification methods still face two critical challenges: (1) domain shift issues arising from the direct alignment of mixed spectral-spatial features; (2) high computational costs caused by two-stage training strategies. To address these issues, this paper proposes a single-stage open-set domain adaptation method with decoupled alignment (SoDa$^2$) for cross-scene HSI classification. A contribution-aware dual-modality feature extraction is customized to disentangle the characteristics from spectral sequence signals and spatial details, selectively and adaptively enhancing discriminative features. The decoupled alignment module minimizes the Maximum Mean Discrepancy to independently reduce the spectral discrepancy and the spatial discrepancy between the source and target domains, extracting more fine-grained domain-invariant features. A cost-effective single-stage dual-branch framework is designed to learn MMD-constrainted aligned features and constraint-free intrinsic features for adaptive distinction between known and unknown classes. This framework employs a Gaussian Mixture Model to model the squared cosine similarity distribution between the two feature types, enabling open-set recognition without prior knowledge of unknown classes. Extensive experiments on three groups of HSI datasets demonstrate that SoDa$^2$ outperforms state-of-the-art methods, achieving superior classification accuracy and model transferability for open-set cross-scene tasks.

Mapping standing dead trees is crucial for acquiring information on the effects of climate change on forests and forest biodiversity. However, leveraging high-quality aerial imagery for dead tree segmentation poses challenges due to limitations in sensor availability and the scarcity of annotated data. In this study, we propose a generic blind super-resolution framework that incorporates Attention-Guided Domain Adaptation Networks (ADA-Nets) to learn the mapping from low-resolution to high-resolution multispectral image domains. Our approach operates solely on unpaired samples, mimicking real-world conditions, i.e., low-resolution images are not synthetically obtained by downsampling the high-resolution images. Moreover, the proposed method serves as a general-purpose restorer addressing several image degradation types, including saturation, noise, and low contrast that typically occur in low-resolution images acquired by low-end sensors. To the best of our knowledge, this is the first study to perform real-world and generic super-resolution for multispectral data in the scope of standing dead tree segmentation. Experimental evaluations demonstrate segmentation performances of 54% and 64% in Dice scores. Notably, the first result is obtained without using any high-resolution annotations; the segmentation network is trained on super-resolved low-resolution images, while evaluation is performed on the high-resolution data. We publicly share the aerial multispectral dataset with manually annotated labels at https://www.kaggle.com/datasets/meteahishali/aerial-imagery-for-dead-tree-segmentation-poland.

Vision Foundation Models (VFMs) pretrained on large-scale RGB data have demonstrated remarkable representation quality, yet their applicability to multispectral imaging spanning Near-Infrared (NIR), Short-Wave Infrared (SWIR), and Long-Wave Infrared (LWIR) remains largely unexplored. These spectral modalities offer complementary sensing capabilities critical for robust perception in adverse conditions, but present a fundamental domain gap relative to RGB-centric pretrained models. We present SpectraDINO, a multispectral VFM that bridges this spectral gap by extending DINOv2 ViT backbones to beyond-visible modalities through lightweight, per-modality bottleneck adapters, while preserving the rich representations of the frozen RGB backbone. We introduce a multi-stage teacher-student training protocol in which a frozen DINOv2 teacher guides a spectral student via cosine distillation, symmetric contrastive loss, patch-level alignment, and a novel neighborhood-structure-preservation loss. This staged curriculum enables strong cross-modal alignment without catastrophic forgetting of RGB priors. We evaluate SpectraDINO on multispectral object detection and semantic segmentation across challenging NIR, SWIR, and LWIR benchmarks using widely adopted fusion strategies. SpectraDINO achieves state-of-the-art performance across most benchmarks, validating its effectiveness as a general-purpose backbone for spectral generalization. The code and weights for model variants are available at https://github.com/Yonsei-STL/SpectraDINO.

Conventional push-broom hyperspectral imaging suffers from slow acquisition speeds, precluding real-time object detection; in contrast, snapshot spectral imaging enables instantaneous hyperspectral images (HSIs) capture, making real-time object detection feasible, yet its potential is often compromised by time-consuming post-capture reconstruction. To address this issue, we propose the Focal U-shaped Network (FUN), a novel end-to-end framework that jointly performs HSI reconstruction and object detection via multi-task learning. FUN employs a shared U-shaped backbone, where reconstruction provides underlying spectral information while detection guides semantic-aware priors learning, facilitating mutually beneficial task interaction. Crucially, we introduce focal modulation, an efficient alternative to self-attention that modulates spatial and spectral features while reducing quadratic computational complexity, enabling a self-attention-free architecture for joint reconstruction and detection. Furthermore, we contribute a new HSI object detection dataset with 8712 annotated objects across 363 HSIs to facilitate evaluation of the proposed method. Experiments demonstrate that FUN achieves state-of-the-art performance on both tasks, using 40% fewer parameters and 30% less computation than recent alternatives, making it promising for future real-time edge deployment. The code and datasets are available: https://github.com/ShawnDong98/FUN.

Hyperspectral imaging (HSI) semantic segmentation typically relies on in-domain training, but limited data availability often restricts model performance in real-world applications. Current approaches to leverage foundation models in proximal sensing use cross-modality techniques, bridging RGB and HSI to exploit vision foundation models. However, these methods either discard spectral information or introduce architectural complexity. We propose cross-domain transfer as an alternative, reusing HSI foundation models - originally trained in remote sensing - for proximal sensing applications. By eliminating the need to bridge modality gaps, our approach preserves spectral information while maintaining a simple architecture. Using the HS3-Bench benchmark, we systematically evaluate and compare conventional in-domain, in-modality training, cross-modality transfer and cross-domain transfer strategies. Our results demonstrate that cross-domain transfer achieves large performance improvements over in-domain, in-modality training, reduces the performance gap to cross-modality approaches and maintains strong performance in limited data settings. Thus, this work advances more effective HSI semantic segmentation in diverse applications.

The NASA PACE mission provides unprecedented hyperspectral observations of ocean color, aerosols, and clouds, offering new insights into how these components interact and influence Earth's climate and air quality. Its Ocean Color Instrument measures light across hundreds of finely spaced wavelength bands, enabling detailed characterization of features such as phytoplankton composition, aerosol properties, and cloud microphysics. However, hyperspectral data of this scale is large, complex, and difficult to label, requiring specialized processing and analysis techniques. Existing foundation models, which have transformed computer vision and natural language processing, are generally trained on standard RGB imagery and therefore struggle to interpret the continuous spectral signatures captured by PACE. While recent advances have introduced hyperspectral foundation models, they are typically trained on cloud-free observations and often remain limited to single-sensor datasets due to spectral inconsistencies across instruments. Moreover, existing models tend to be parameter-heavy and computationally expensive, limiting scalability and adoption in operational settings. To address these challenges, we introduce HyperFM, a parameter-efficient hyperspectral foundation model that leverages intra-group and inter-group spectral attention along with hybrid parameter decomposition to better capture spectral spatial relationships while reducing computational cost. HyperFM demonstrates consistent performance improvements over existing hyperspectral foundation models and task-specific state-of-the-art methods across four benchmark downstream atmospheric cloud property retrieval tasks. To support further research, we additionally release HyperFM250K, a large-scale hyperspectral dataset from the PACE mission that includes both clear and cloudy scenes.

Fusing a low resolution (LR) mosaiced hyperspectral image (HSI) with a high resolution (HR) panchromatic (PAN) image offers a promising avenue for video-rate HR-HSI imaging via single-shot acquisition, yet its severely ill-posed nature remains a significant challenge. In this work, we propose a novel semi-supervised flow matching framework for mosaiced and PAN image fusion. Unlike previous diffusion-based approaches constrained by specific protocols or handcrafted assumptions, our method seamlessly integrates an unsupervised scheme with flow matching, resulting in a generalizable and efficient generative framework. Specifically, our method follows a two-stage training pipeline. First, we pretrain an unsupervised prior network to produce an initial pseudo HR-HSI. Building on this, we then train a conditional flow matching model to generate the target HR-HSI, introducing a random voting mechanism that iteratively refines the initial HR-HSI estimate, enabling robust and effective fusion. During inference, we employ a conflict-free gradient guidance strategy that ensures spectrally and spatially consistent HR-HSI reconstruction. Experiments on multiple benchmark datasets demonstrate that our method achieves superior quantitative and qualitative performance by a significant margin compared to representative baselines. Beyond mosaiced and PAN fusion, our approach provides a flexible generative framework that can be readily extended to other image fusion tasks and integrated with unsupervised or blind image restoration algorithms.

Sentinel-5P (S5P) plays a critical role in atmospheric monitoring; however, its spatial resolution limits fine-scale analysis. Existing super-resolution (SR) approaches rely on supervised learning with synthetic low-resolution (LR) data, since true high-resolution (HR) data do not exist, limiting their applicability to real observations. We propose a self-supervised hyperspectral SR framework for S5P that enables training without HR ground truth. The method combines Stein's Unbiased Risk Estimator (SURE) with an equivariant imaging constraint, incorporating the S5P degradation operator and noise statistics derived from signal-to-noise ratio (SNR) metadata. We also introduce depthwise separable convolution U-Net architectures designed for efficiency and spectral fidelity. The framework is evaluated in two settings: (i) LR-HR, where synthetic LR data are used for direct comparison with supervised learning, and (ii) GT-SHR, where super-resolved images surpass the native spatial resolution without HR reference. Results across multiple bands show that self-supervised models achieve performance comparable to supervised methods while maintaining strong consistency. Qualitative analysis shows improved spatial detail over bicubic interpolation, and validation with EMIT data confirms that reconstructed structures are physically meaningful. Code is available at https://github.com/hyamomar/Sentinel-5P-Super-Resolution/tree/main/self_supervised

Land surface temperature (LST) super-resolution is important for environmental monitoring. However, it remains challenging as coarse thermal observations severely underdetermine fine-scale structure. In this paper, we propose Earth Foundation Model-guided Diffusion (EFDiff), a novel framework for super-resolution under extreme spatial degradation. EFDiff uses the Prithvi-EO-2.0 Earth foundation model to encode high-resolution multispectral reflectance into geospatial embeddings, which are injected into the denoising network via cross-attention to guide fine-scale reconstruction from highly degraded observations. We study two variants, EFDiff-$ε$ and EFDiff-$x_0$, which offer complementary trade-offs between perceptual realism and pixel-level fidelity. We evaluate EFDiff under an extreme $32\times$ scale gap using a globally diverse benchmark comprising 242,416 co-registered Landsat thermal-reflectance patches. Results show that EFDiff consistently outperforms baseline methods and that cross-attention conditioning by EFM is more effective than HLS channel concatenation. Although we present EFDiff in the context of LST super-resolution, the framework is broadly applicable to remote sensing problems in which pretrained geospatial representations can guide generative reconstruction.

Hyperspectral imaging enables fine-grained recognition of materials by capturing rich spectral signatures, but learning robust classifiers is challenging due to high dimensionality, spectral redundancy, limited labeled data, and strong domain shifts. Beyond earth observation, labeled HSI data is often scarce and imbalanced, motivating compact models for generic hyperspectral classification across diverse acquisition regimes. We propose the lightweight Spectral-Spatial Fusion Transformer (SSFT), which factorizes representation learning into spectral and spatial pathways and integrates them via cross-attention to capture complementary wavelength-dependent and structural information. We evaluate our SSFT on the challenging HSI-Benchmark, a heterogeneous multi-dataset benchmark covering earth observation, fruit condition assessment, and fine-grained material recognition. SSFT achieves state-of-the-art overall performance, ranking first while using less than 2% of the parameters of the previous leading method. We further evaluate transfer to the substantially larger SpectralEarth benchmark under the official protocol, where SSFT remains competitive despite its compact size. Ablation studies show that both spectral and spatial pathways are crucial, with spatial modeling contributing most, and that SSFT remains robust without data augmentation.

Synthetic hyperspectral image (HSI) generation is essential for large-scale simulation, algorithm development, and mission design, yet traditional radiative transfer models remain computationally expensive and proposed emulation methods are often limited to spectrum-level outputs. In this work, we propose a latent representation-based framework for hyperspectral emulation that learns a probabilistic latent representation of hyperspectral data. The proposed approach supports both spectrum-level and spatial-spectral emulation and can be trained either in a direct one-step formulation or in a two-step strategy that couples variational autoencoder (VAE) pretraining with parameter-to-latent mapping. Experiments on PROSAIL-simulated vegetation data and Sentinel-3 OLCI imagery demonstrate that the method outperforms classical regression-based emulators in reconstruction accuracy, spectral fidelity, and robustness to real-world spatial variability. We further show that emulated HSIs preserve performance in downstream biophysical parameter retrieval, highlighting the practical relevance of emulated data for remote sensing applications.

Reconstructing a three-dimensional hyperspectral cube from a two-dimensional compressed measurement is a severely ill-posed inverse problem. Existing deep unfolding networks (DUNs) retain fidelity to the imaging model, but regression-trained denoisers can suppress spatial detail and smooth spectral structure under strong modulation. This paper proposes \emph{FMU}, a deep unfolding framework that couples a measurement-conditioned flow-matching prior with a sensing-model-guided measurement update. A two-phase scheme first learns a compact clean-HSI latent target and then trains a conditional velocity field to generate this target from Gaussian noise. A mean-velocity regularizer additionally penalizes the first-moment error of the learned field. On the KAIST 10-scene benchmark under the optical-filter setting, FMU obtains 42.13,dB PSNR and 0.9900 SSIM, outperforming LADE-DUN by 1.16,dB in PSNR under the same training data, sensing mask, and evaluation protocol. Under the same optical-filter operator, FMU is further evaluated on held-out KAIST and ICVL scenes without fine-tuning. We also report quantitative simulated-CASSI results and qualitative reconstructions of real CASSI measurements.

Hyperspectral imaging is a powerful bioimaging tool which can uncover novel insights, thanks to its sensitivity to the intrinsic properties of materials. However, this enhanced contrast comes at the cost of system complexity, constrained by an inherent trade-off between spatial, spectral, and temporal resolution. To overcome this limitation, we present a self-supervised deep learning-based approach that restores and enhances pixel resolution post-acquisition without requiring external training data beyond the images to be restored. Fine-tuned using metrics aligned with the imaging model, our physics-aware method achieves a 16$\times$ pixel super-resolution enhancement and a 12$\times$ imaging speedup without the need of additional training data for transfer learning. Applied to both synthetic and experimental data from five different sample types, including healthy and diseased tissues, we demonstrate that the model preserves biological integrity, as we did not detect systematic loss of biological features or biologically consequential hallucinations in tested datasets. We also concretely demonstrate the model's ability to reveal disease-associated metabolic changes that would otherwise remain undetectable. Furthermore, we provide physical insights into the model's inner workings, paving the way for future refinements that could potentially reveal novel high resolution features in an explainable manner. All methods are available as open-source software on GitHub.

We consider the problem of reconstructing a HxWx31 hyperspectral image from a $H\times W$ grayscale snapshot measurement that is captured using only a single diffractive lens and a filterless panchromatic photosensor. This problem is severely ill-posed, but we present a model that produces high-quality results in simulation and experiment. We make efficient use of limited training data by creating a conditional denoising diffusion model that operates on small patches in a shift-invariant manner. During inference, we synchronize per-patch hyperspectral predictions using guidance by physical consistency with the system's optical point spread function. Our experiments reveal that the patch size can be as small as the point spread function, with local optical cues being the main source of information about complete spectra. Also, by drawing multiple samples, our model provides per-pixel uncertainty estimates that strongly correlate with reconstruction error.