Precision Livestock Farming

Reliable individual monitoring is essential for dairy cattle welfare and early heat stress detection in Precision Livestock Farming (PLF). However, translating raw multi-camera videos into automated diagnostics remains challenging due to disconnected tracking and recognition pipelines and complex physical environments. Dense mutual occlusions and cross-camera viewpoint variations fragment identities, while environmental noise, including camera vibrations, and limited agricultural data obscure subtle heat stress cues such as rapid breathing and flank undulations. To bridge low-level visual features and high-level behavioral diagnostics, we propose CowCare, a unified framework combining viewpoint-robust tracking with spatiotemporal heat stress recognition. Its tracking module, CowTrack, maintains cross-camera identity consistency through a View-Decoupled Aggregation Network (VDA-Net). Instead of relying on static global representations, VDA-Net aggregates localized textures under heavy occlusion and uses a Viewpoint Decoupling Transformer (VDT) to suppress transient viewpoint variations. CowTrack further incorporates a causal online self-supervision mechanism for continuous adaptation to dynamic farm scenes. The resulting tracklets are subsequently processed by TSDF-Net, a fine-grained video understanding network. Its Temporal Stabilization and Aggregation Module (TSAM) suppresses high-frequency jitter, while a Diffusion Semantic Prior (DSP) uses frozen pre-trained diffusion semantics to enhance subtle behavioral signals and mitigate overfitting. Extensive evaluations on two real-world farm benchmarks demonstrate the framework's effectiveness: CowTrack achieves 83.48% HOTA and 87.72% IDF1 for global multi-object tracking on MVCow, and TSDF-Net achieves 87.72% Top-1 accuracy on HSCow. These results establish CowCare as a robust end-to-end framework for automated livestock health monitoring.

Automated pig monitoring is essential for assessing their health, behaviour, and welfare. To date, most pig monitoring solutions operate on the group-level, because individual-level monitoring requires reliable long-term identification and tracking of each animal. For domesticated pigs this remains challenging because pigs of the same breed often have highly uniform appearances. Moreover, research on pig monitoring is almost exclusively reported in top-down view camera settings, which considerably ease tracking, but are not always an option in practice. In this work, BMCTrack-d is presented, a novel tracking-by-detection approach that leverages unique back marks to enable robust pig re-identification and tracking in a challenging side-view camera setting, afflicted by rapidly moving pigs, severe occlusions and low resolution. The method first predicts the detected pigs' identities using a neural network-based back mark classifier. To improve re-identification reliability over time, two dedicated post-processing stages are introduced: a temporal prediction consistency check, which validates the identity assignments against the recent prediction history, and deduplication, which resolves conflicting identity assignments in each time step. By explicitly prioritising accurate, appearance-based re-identification over continuous tracking, the proposed approach addresses a key limitation of existing trackers for individual-level monitoring scenarios. On a demanding test set BMCTrack-d outperforms two strong baselines, BoT-SORT-ReID and TrackTrack-ReID, by 9.11% and 1.03%, respectively, in higher-order tracking accuracy. These results demonstrate the effectiveness of back mark-based re-identification and tracking for robust individual-level pig monitoring in challenging settings.

In real pigsty environments, pig point clouds often come into close contact with background structures, resulting in blurred target boundaries, local adhesion, and background mis-segmentation. This reduces the accuracy of subsequent point cloud completion and body size measurement. To address these challenges, this study proposes a pig point cloud segmentation method based on boundary feature analysis. The proposed method adopts Octree Transformer as the backbone network and integrates local geometric details with global semantic context through octree convolution, self-attention encoding, and multi-scale feature fusion. Furthermore, soft-distance boundary pseudo-labels are generated to provide continuous boundary supervision, and a bidirectional cross-boundary semantic module is designed to enable explicit interaction between boundary and semantic features. Experiments conducted on a comprehensive dataset demonstrate that the proposed method significantly outperforms various state-of-the-art models in terms of segmentation accuracy, mean intersection over union, and boundary delineation. The results indicate that the method effectively alleviates boundary adhesion, providing reliable point cloud inputs for downstream precision livestock farming tasks.

Deep learning-based object detection has revolutionized Precision Livestock Farming (PLF), yet a critical barrier remains: high-performance Foundation Models (such as SAM 3) are too computationally intensive for edge deployment, while lightweight models (like YOLO) require prohibitive manual annotation efforts. This work proposes a fully automated knowledge distillation pipeline that leverages the Segment Anything Model 3 (SAM 3) to generate zero-shot pseudo-labels for training efficient YOLOv8 detectors. By treating SAM 3 as an offline auto-annotator, we eliminate the manual labeling bottleneck, producing models capable of real-time inference on resource-constrained hardware. We systematically evaluate this approach on the PigLife dataset, comparing SAM 3-supervised models against human-annotated baselines. Results demonstrate that a SAM 3-trained YOLOv8m achieves a mean Average Precision (mAP) of 79.4% without human intervention, while reducing inference latency by approximately 200$\times$ compared to the teacher model. Furthermore, stratified analysis reveals that in low-occlusion scenarios, the automated pipeline achieves detection rates comparable to human benchmarks ($AP_{50} > 99\%$). These findings indicate that foundation models can serve as effective, zero-annotation-cost supervisors, enabling scalable edge computing solutions for smart agriculture.

Foundation-model pipelines for individual-level livestock monitoring -- combining open-vocabulary detection, promptable video segmentation, and self-supervised visual embeddings -- have raised the accuracy ceiling of precision livestock farming (PLF), but their GPU memory budgets exceed the envelope of commodity edge accelerators. To close this gap, the 446M-parameter Perception Encoder (PE-ViT-L+) backbone of SAM 3 is distilled into a 40.66M-parameter multi-scale student through three mechanisms: a Feature Pyramid Network student encoder built on TinyViT-21M-512, a four-term direction-then-scale distillation loss, and backbone-substitution inference with sliding-window session pruning that bounds streaming GPU memory growth. The DINOv3 family includes a pre-distilled ViT-S/16 variant (21.6M parameters) released alongside a 6716M-parameter ViT-7B teacher; the ViT-S (21M) variant is adopted as the per-individual embedder. On the Edinburgh Pig dataset, the compressed pipeline reaches 92.29% MOTA and 96.15% IDF1 against the SAM 3 teacher (1.68- and 0.84-percentage-point losses), achieves a 7.77-fold reduction in system-level parameters and a 3.01-fold reduction in peak VRAM (19.52GB -> 6.49GB), and reaches 97.34% top-1 accuracy with 91.67% macro-F1 on nine-class pig behaviour classification. The pipeline fits inside an NVIDIA Jetson Orin NX 16GB envelope with 4.9GB of headroom, supporting a proposed -- but not yet empirically validated -- on-device embedding-pool re-identification mechanism whose per-individual footprint of approximately 94MB per animal per year produces a longitudinal visual record amenable to retrospective association with disease, lameness, reproductive, and growth outcome labels.

Accurate identification of individual farm animals in group-housed environments is a cornerstone of precision livestock management. However, current industry standards rely heavily on Radio Frequency Identification (RFID) ear tags, which are invasive, prone to loss, and restricted by the spatial limitations of antenna fields. In this paper, we propose a non-intrusive, vision-based identification system leveraging 3D point cloud data captured within a commercial electronic feeding station (EFS). Departing from traditional supervised frame-level inference, we introduce the Temporal Adaptive Recognition Architecture (TARA), a self-sufficient, semi-supervised framework designed to maintain identity consistency over time. TARA employs a dynamic recalibration mechanism that updates individual identity profiles to account for morphological changes in the livestock. To facilitate training in label-scarce environments, we utilize a visit-level majority voting strategy to generate high-fidelity pseudo-labels from raw temporal sequences. Experimental results on a group housed sow dataset collected from an operational commercial barn demonstrate that our approach achieves 100% identification accuracy at the visit level. These results suggest that vision-based 3D point cloud analysis offers a robust, superior alternative to RFID-based systems, paving the way for fully autonomous individual animal monitoring.

Precision livestock farming requires accurate and timely heat stress prediction to ensure animal welfare and optimize farm management. This study presents a physics-informed digital twin (DT) framework combined with an uncertainty-aware, expert-weighted stacked ensemble for multimodal forecasting of Core Body Temperature (CBT) in dairy cattle. Using the high-frequency, heterogeneous MmCows dataset, the DT integrates an ordinary differential equation (ODE)-based thermoregulation model that simulates metabolic heat production and dissipation, a Gaussian process for capturing cow-specific deviations, a Kalman filter for aligning predictions with real-time sensor data, and a behavioral Markov chain that models activity-state transitions under varying environmental conditions. The DT outputs key physiological indicators, such as predicted CBT, heat stress probability, and behavioral state distributions are fused with raw sensor data and enriched through multi-scale temporal analysis and cross-modal feature engineering to form a comprehensive feature set. The predictive methodology is designed in a three-stage stacked ensemble, where stage 1 trains modality-specific LightGBM 'expert' models on distinct feature groups, stage 2 collects their predictions as meta-features, and at stage 3 Optuna-tuned LightGBM meta-model yields the final CBT forecast. Predictive uncertainty is quantified via bootstrapping and validated using Prediction Interval Coverage Probability (PICP). Ablation analysis confirms that incorporating DT-derived features and multimodal fusion substantially enhances performance. The proposed framework achieves a cross-validated R2 of 0.783, F1 score of 84.25% and PICP of 92.38% for 2-hour ahead forecasting, providing a robust, uncertainty-aware, and physically principled system for early heat stress detection and precision livestock management.

Foundation models (FM) are reshaping computer vision by reducing reliance on task-specific supervised learning and leveraging general visual representations learned at scale. In precision livestock farming, most pipelines remain dominated by supervised learning models that require extensive labeled data, repeated retraining, and farm-specific tuning. This study presents an FM-centered workflow for automated monitoring of group-housed nursery pigs, in which pretrained vision-language FM serve as general visual backbones and farm-specific adaptation is achieved through modular post-processing. Grounding-DINO was first applied to 1,418 annotated images to establish a baseline detection performance. While detection accuracy was high under daytime conditions, performance degraded under night-vision and heavy occlusion, motivating the integration of temporal tracking logic. Building on these detections, short-term video segmentation with Grounded-SAM2 was evaluated on 550 one-minute video clips; after post-processing, over 80% of 4,927 active tracks were fully correct, with most remaining errors arising from inaccurate masks or duplicated labels. To support identity consistency over an extended time, we further developed a long-term tracking pipeline integrating initialization, tracking, matching, mask refinement, re-identification, and post-hoc quality control. This system was evaluated on a continuous 132-minute video and maintained stable identities throughout. On 132 uniformly sampled ground-truth frames, the system achieved a mean region similarity (J) of 0.83, contour accuracy (F) of 0.92, J&F of 0.87, MOTA of 0.99, and MOTP of 90.7%, with no identity switches. Overall, this work demonstrates how FM prior knowledge can be combined with lightweight, task-specific logic to enable scalable, label-efficient, and long-duration monitoring in pig production.

Automated behavior classification is essential for precision livestock farming but faces challenges of high computational costs and limited labeled data. This study systematically compared three approaches: training from scratch (ResNet-18, ViT-Small), frozen feature extraction, and parameter-efficient fine-tuning (PEFT) of the DINOv3 foundation model (6.7 billion parameters). We evaluated QLoRA and DoRA across multiple configurations varying rank (8, 16, 64) and target modules (q_proj versus all-linear layers). With 2,160 verified training images, we assessed generalization of our model on 211,800 test samples, which is essentially a 98:1 test-to-train ratio. Results demonstrated that PEFT substantially outperformed alternatives, where the best QLoRA configuration (all-linear layers and rank=64) achieved 83.16% test accuracy with only 2.72% parameters (183.0M) in 5.8 hours, compared to 72.87% for ResNet-18 (16.8 hours), 61.91% for ViT-Small (18.7 hours), and 76.56% for frozen DINOv3 (17.5 hours). DoRA achieved comparable accuracy (83.14%) but with longer training time (11.0 hours). Notably, increasing adapter capacity consistently improved generalization while simultaneously not causing overfitting: reducing rank from 16 to 8 decreased test accuracy from 78.38% to 77.17%, while expanding from q_proj-only to all-linear layers with rank=64 improved accuracy from 78.38% to 83.16%. This suggests underfitting, instead of overfitting, is the primary challenge when adapting foundation models to agricultural imagery. Our findings provide guidelines for deploying billion-parameter vision models with PEFT in agricultural livestock applications.

The lactation performance of Saanen dairy goats, renowned for their high milk yield, is intrinsically linked to their body size, making accurate 3D body measurement essential for assessing milk production potential, yet existing reconstruction methods lack goat-specific authentic 3D data. To address this limitation, we establish the FemaleSaanenGoat dataset containing synchronized eight-view RGBD videos of 55 female Saanen goats (6-18 months). Using multi-view DynamicFusion, we fuse noisy, non-rigid point cloud sequences into high-fidelity 3D scans, overcoming challenges from irregular surfaces and rapid movement. Based on these scans, we develop SaanenGoat, a parametric 3D shape model specifically designed for female Saanen goats. This model features a refined template with 41 skeletal joints and enhanced udder representation, registered with our scan data. A comprehensive shape space constructed from 48 goats enables precise representation of diverse individual variations. With the help of SaanenGoat model, we get high-precision 3D reconstruction from single-view RGBD input, and achieve automated measurement of six critical body dimensions: body length, height, chest width, chest girth, hip width, and hip height. Experimental results demonstrate the superior accuracy of our method in both 3D reconstruction and body measurement, presenting a novel paradigm for large-scale 3D vision applications in precision livestock farming.

Holstein-Friesian detection and re-identification (Re-ID) methods capture individuals well when targets are spatially separate. However, existing approaches, including YOLO-based species detection, break down when cows group closely together. This is particularly prevalent for species which have outline-breaking coat patterns. To boost both effectiveness and transferability in this setting, we propose a new detect-segment-identify pipeline that leverages the Open-Vocabulary Weight-free Localisation and the Segment Anything models as pre-processing stages alongside Re-ID networks. To evaluate our approach, we publish a collection of nine days CCTV data filmed on a working dairy farm. Our methodology overcomes detection breakdown in dense animal groupings, resulting in a 98.93% accuracy. This significantly outperforms current oriented bounding box-driven, as well as SAM species detection baselines with accuracy improvements of 47.52% and 27.13%, respectively. We show that unsupervised contrastive learning can build on this to yield 94.82% Re-ID accuracy on our test data. Our work demonstrates that Re-ID in crowded scenarios is both practical as well as reliable in working farm settings with no manual intervention. Code and dataset are provided for reproducibility.

Camera-based animal re-identification (Animal Re-ID) can support wildlife monitoring and precision livestock management in large outdoor environments with limited wireless connectivity. In these settings, inference must run directly on collar tags or low-power edge nodes built around microcontrollers (MCUs), yet most Animal Re-ID models are designed for workstations or servers and are too large for devices with small memory and low-resolution inputs. We propose an on-device framework. First, we characterise the gap between state-of-the-art Animal Re-ID models and MCU-class hardware, showing that straightforward knowledge distillation from large teachers offers limited benefit once memory and input resolution are constrained. Second, guided by this analysis, we design a high-accuracy Animal Re-ID architecture by systematically scaling a CNN-based MobileNetV2 backbone for low-resolution inputs. Third, we evaluate the framework with a real-world dataset and introduce a data-efficient fine-tuning strategy to enable fast adaptation with just three images per animal identity at a new site. Across six public Animal Re-ID datasets, our compact model achieves competitive retrieval accuracy while reducing model size by over two orders of magnitude. On a self-collected cattle dataset, the deployed model performs fully on-device inference with only a small accuracy drop and unchanged Top-1 accuracy relative to its cluster version. We demonstrate that practical, adaptable Animal Re-ID is achievable on MCU-class devices, paving the way for scalable deployment in real field environments.