Scholar Information Database
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5 papers in the last four weeks, against 1 the four weeks before. 0.1% of all new papers.
Latest papers 34
What makes great scientists great? Even as AI systems start to make progress on open problems, scientists remain far ahead of them at sensing which prior idea, buried in an ever-growing archive of research, a new problem needs. To study this skill, we draw on researchers who know firsthand which earlier work advanced their completed projects, with papers serving as pointers to the ideas within. Using our automated pipeline that makes author annotation scalable, we build ScholarCatalyst by having 184 lead authors of 207 recent computer science papers label which candidates did or could have advanced their project, each with a detailed rationale. We introduce a retrieval task with author-provided judgments: given an initial research question, retrieve these papers from only the literature available when the project began. Agentic search does no better than embedding retrieval (0.42 vs. 0.48 Recall@20) despite calling that same retriever as a tool. Even an agent built on Claude Fable 5.1, which may have seen the completed papers during training, reaches only 0.51 R@20. These results highlight the need for new training recipes that equip models with expert intuition for searching broad corpora. We envision ScholarCatalyst as a step toward scientific agents that can take a half-formed idea and point to the prior research it needs.
AiSearch: Interactive Multi-Modal Search with VLMs
Modern retrieval systems must both be automated and interactive, allowing users to search and refine results in real time. We present AiSearch, a flexible multimodal retrieval framework that leverages the zero shot capabilities of Vision Language Models (VLMs) for natural language search over images and videos. AiSearch supports interactive search refinement through user feedback to tailor results to the user's intent, and allows visual benchmarking across multiple VLMs, enabling users to select the most suitable model for their task.
GitScholar: A Dataset for Predicting AI Research Impact from GitHub Engagement
With the rapid pace of AI research and the hundreds of daily new publications, staying up-to-date with the latest developments has become increasingly difficult. For researchers, quickly identifying impactful work is essential, yet manually reviewing each new publication is impractical. Automated impact prediction methods help address this challenge, usually by combining various information sources available, such as a paper's content or citation history. In this work, we propose using GitHub engagement as an additional source and demonstrate that it provides both a timely and accurate signal. To this end, we introduce GitScholar, a novel dataset that links GitHub activity from 444,000 repositories to over 558,000 AI arXiv papers. Our experiments show that GitHub reactions improve early prediction precision by up to 12% over a strong academic baseline. Additionally, we find that GitHub signal offers near-complete coverage of high-impact AI papers, and consistently correlates with future academic success. GitScholar is publicly available at https://huggingface.co/datasets/huawei-csl/GitScholar.
ScholarStack: Layered Research Asset Orchestration and Cross-Task Reuse for Scientific Agents
Scientific agents support a range of literature-based research tasks, such as retrieval, question answering, evidence-grounded generation, and claim assessment. Most existing systems, however, are organized around individual tasks: the same papers are repeatedly retrieved, segmented, and interpreted, and the understanding built in one task is difficult to reuse in the next. We present ScholarStack, a layered research asset framework that compiles a paper collection into reusable, versioned, and provenance-preserving assets at three complementary levels: source-grounded paper-level statements, domain-level organization, and evidence-grounded cross-paper syntheses. A common access interface returns task-specific views at the evidence granularity each task requires, preserving study conditions, source traceability, and verification status. We instantiate the framework on four task families spanning ten task settings, comparing agents that use the compiled assets with task-specific baselines under matched base models. Quality gains concentrate on tasks that require cross-paper evidence, such as multi-paper question answering and literature review generation, and query-time token cost falls on every task where it is measured, with assets compiled once and reused across tasks. These results suggest that layered research assets can serve as shared infrastructure for scientific agents, shifting literature-based assistance from isolated document processing toward cumulative, evidence-grounded workflows.
Playing log(N)-Questions over Wikipedia Abstracts: How Per-Round Errors Compound Under Information Asymmetry
We evaluate six frontier language models on the two-agent -Questions game (Potash et al., 2019) to measure self-communication across an information asymmetry. A questioner with access to candidate Wikipedia lead paragraphs ( to ) must identify a secret target using exactly binary questions answered by an agent from the same provider that sees only the target. Across 408 games, win rate decays cleanly as a geometric power of horizon length, (). Per-round failure rates are flat across the horizon, indicating that errors compound because more rounds must succeed rather than because individual rounds grow harder. Adjudication across three independent judges shows that losses divide between single-agent answer errors and discrimination failures, which become undetectable and unrecoverable under the two-agent structure rather than from channel breakdown. Claude Opus 5 lags behind due to systematic false-negative answers (82% answer errors), whereas the five leading models (GLM-5.3, GPT-5.6 Sol, Grok 4.6, Gemini 3.8 Flash, and Kimi K3) are closely clustered. Maximizing information gain requires structural partitioning (e.g., splitting on document titles), and neither reasoning-token expenditure nor API cost correlates with success (), highlighting communicative reliability as a distinct bottleneck from inference compute.
Comparing Retrieval Methods for Academic Advisor Discovery: A Six-Method Study of 768 CS Faculty Profiles Across 9 US Universities
We present a comparative evaluation of six information retrieval methods for the task of academic advisor discovery: ranking CS faculty members by relevance to a graduate applicant's research interest statement. The methods span sparse lexical matching (Jaccard overlap, TF-IDF, BM25), dense semantic retrieval (all-MiniLM-L6-v2 sentence embeddings), hybrid score fusion, and learning-to-rank. Evaluation uses a new domain-specific collection: 768 faculty profiles scraped from 9 US CS departments, with 162 graded relevance judgments (grade 0/1/2) across 5 queries representing distinct graduate student research profiles. Across all five queries, Reranked achieves the highest mean NDCG@10 (0.477, std 0.138), followed by Semantic (0.450), Hybrid (0.421), BM25 (0.406), Jaccard (0.303), and TF-IDF (0.246). After Bonferroni correction across all 15 pairwise comparisons, TF-IDF is significantly worse than BM25, Semantic, Hybrid, and Reranked; no other pairwise difference survives correction at 5 queries. A field ablation reveals that biography alone (NDCG 0.634) outperforms the full model combining biography with research area tags (0.593). A controlled experiment shows that concatenating arXiv paper abstracts reduces NDCG@10 by 0.176, motivating a late-fusion architecture. All code, scrapers, and relevance labels are released openly.
The zbMATH Open Knowledge Graph: Tracing Centuries of Mathematical Research
We present the zbMATH Open Knowledge Graph, a large-scale RDF knowledge graph (KG) covering more than 250 years of mathematical scholarship. Unlike existing scholarly knowledge graphs that primarily capture bibliographic metadata and citation structures, the zbMATH Open KG integrates expert-curated semantic content, including reviews, keywords, subject classifications, software references, and disambiguated authorship. This combination of domain-specific representation of mathematical knowledge and extensive temporal coverage supports analyses that require fine-grained exploration of mathematical concepts, research fields, and scholarly relationships over time. The resulting graph comprises 34 million entities and 168 million RDF triples represented using established Semantic Web vocabularies, supporting interoperability and FAIR data principles. We further demonstrate its capabilities through query-driven historically grounded scholarly exploration use cases, illustrating how the knowledge graph can surface relationships and patterns that may be difficult to identify from bibliographic and citation information alone. The zbMATH Open KG provides an open semantic infrastructure for studying the development of mathematical knowledge and tracing scholarly connections across centuries of scholarship.
KNOWPLAN: Knowledge-Driven AI Agents for Smart Degree Pathway Planning
Planning a degree from official university sources requires solving two problems in order. The institution's curriculum must first be reconstructed from catalogs, departmental pages, JSON endpoints, and PDFs that share no schema, and only then can a student-specific path be optimized under prerequisite logic and overlapping requirement constraints. Coupling the two lets each failure mode hide the other, because a planner that drives its own crawling never learns facts its current plan does not need. We present KnowPlan, which enforces an extraction-first boundary and measures the interface between the stages rather than assuming it. CatalogBrowse explores with no access to any user profile. It scores legal actions by lower-confidence expected marginal gain over a finite set of atomic catalog obligations per unit of source access, parses deterministically through platform adapters with a span-constrained clause-to-AST model fallback, and terminates on a closure certificate over index, schema, provenance, and reference completeness instead of a reward threshold. Its output contract is three provenance-linked JSON documents. DegreeMap consumes only those documents. It compiles them into a typed requirement hypergraph and optimizes lexicographically with CP-SAT over hard feasibility, completion horizon, load and risk, personalized utility, and option value, so that each stage optimizes inside the previous stage's proven optimum and stays certifiable within the solver budget. Across a 100-university broad track and a six-school dense track, CatalogBrowse reaches 96.2% inventory recall and 88.7% masked-source recovery at 47% less source access than an exhaustive crawler, DegreeMap holds 100.0% hard feasibility while improving personalized utility by +0.066 over the strongest baseline, and the full pipeline certifies 99.5% of requests with a utility gap to the privileged gold graph of 0.015.
AskChem: Claim-Centered Infrastructure for Chemistry Literature Synthesis
Chemistry literature synthesis often requires assembling specific findings scattered across many publications, yet existing literature-search systems primarily return ranked document lists. As a result, scientists and AI agents need to locate relevant information, verify their provenance, and assemble cross-paper answers manually. We present AskChem, a claim-centered infrastructure for cross-paper chemistry search. AskChem changes the unit of retrieval from the paper to the provenance-carrying claim: each paper is converted into atomic, typed claims, each grounded by a source DOI and a verbatim quote or an explicit evidence locator. Over this shared claim store, AskChem exposes complementary structures for search and synthesis: a stabilized faceted taxonomy for hierarchical retrieval and browsing, an evidence graph linking claims through relations, and an exploratory living taxonomy that situates indexed papers under scientific principles. AskChem currently indexes 2.4M claims from 147K papers and provides a web interface, as well as REST, SDK, and MCP access for AI agents. On AskChem-Bench, grounding a GPT-5.5 reader in AskChem yields 100% resolvable DOIs, compared with 88.3% without retrieval, and the highest citation density among five tested systems. AskChem is live at https://askchem.org.
EMBL AI Librarian: Life-Sciences Knowledge Layer for AI Agents
The web is increasingly accessed by AI agents rather than humans. Every agent needs knowledge, especially in the life-sciences, where agentic pipelines are growing fast. Access to the literature is a crucial part of that need, and resources such as Europe PMC, with over 40M indexed records, are widely used to meet it. Yet these resources were not built for AI agents: they take keywords and complex syntax and return whole papers, so every agent must learn the syntax, issue several searches, and read full papers to find the evidence it needs. We introduce EMBL AI Librarian, a knowledge layer that upgrades the Europe PMC interface for AI agents: an agent asks in natural language and receives evidence that answers it. A single LLM orchestrates the whole knowledge retrieval process: it plans complementary subqueries executed by the live Europe PMC search engine, then reads the selected papers and locates the relevant evidence. We evaluate Librarian across four benchmarks: literature synthesis, claim verification, open-domain question answering, and downstream biology tasks such as protocol questions and sequence manipulation. On ScholarQABench, Librarian improves Citation F1 by more than points over strong recently published baselines. Used as the retrieval layer of an existing claim-verification pipeline, it increases agreement with expert consensus; and on the open-form LitQA2 benchmark, a GPT-5.4 agent scores about points higher when grounded in Librarian than with web search. Overall, our results show that equipping life-science agents with the Librarian knowledge layer improves performance across a range of tasks. We release our code publicly at https://github.com/petroni-lab/librarian
Traceable Scholarship: Page Anchors and Ariadne's Thread for Humanistic Inquiry in the Age of Generative AI
Generative AI lets large language models produce scholarly-looking text within seconds, yet fluency does not equal valid explanation. The deepest risk is not factual error alone but the appearance that an explanation is already established without clear sources, page numbers, editions, or evidence. We liken the page anchor to Ariadne's thread: within the labyrinth of generative fluency, it is the thread that leads the scholar back to the source. This paper proposes Traceable Scholarship as the minimum normative condition for AI-assisted humanistic research, situating it across the three revolutions of knowledge infrastructure: print, digital, and generative AI. We introduce page anchors, dual page numbers, citation-first generation, NO_EVIDENCE, human verification, four-level compliance, and Scope Contract, and present AIH-Infra as a three-layer reference implementation: Contexture (document structuring), Open WebUI AIH-Infra (traceable knowledge base), and AIH-Infra MCP Server (agent gateway). A case study on a 29-volume Kant Akademie-Ausgabe knowledge base illustrates how traceability supports retrieval correction, evidence grading, and judgment downgrading. Traceability is not a software feature; it is the condition under which humanistic research can remain public and refutable in the age of generative AI.
Understanding Generative AI-mediated User Engagement with Academic Library Resources
This study empirically analyzed generative AI as an emerging discovery pathway to academic library resources. Utilizing web analytics from August 2023 to October 2025, the research identifies a significant increase in AI-mediated traffic, particularly following the integration of linked citation features. Referral analysis identified ChatGPT, Perplexity, and Gemini as the primary platforms driving this traffic. A substantial portion of users reached the institutional repository, primarily accessing electronic theses and dissertations. This pattern suggests that AI retrieval mechanisms effectively surface resources with structured metadata and stable permalinks that are Open Access and freely available. The results illustrate how AI ecosystems currently expose library resources and underscore the need for continued analysis and a strategic response to the evolving AI landscape.
Real-World Evaluation of an AI Agent Drafting Translational Impact Summaries
Introduction. Clinical and Translational Science Award (CTSA) programs must document their scholars' research impact, but assembling each scholar's record by hand takes staff an estimated 15 hours and does not scale to a full cohort. An artificial intelligence (AI) agent could serve as a tool to gather scholar data across platforms and disciplines. Methods. We built a human-in-the-loop AI agent that assembles a dossier of sourced evidence for each scholar and drafts one-sentence Translational Science Benefits Model (TSBM) impact summaries for staff review. We evaluated it in the impact-reporting workflow of one CTSA hub across 10 career-development (KL2/K12) scholars. Two evaluation staff independently coded all 507 findings as accept, edit, or reject; the primary measure was the unanimous usable rate, defined as the share both accepted or edited. Results. Both reviewers accepted or edited 81.7% of the agent's findings. Reviewers each spent a median of 14 minutes per scholar, replacing an estimated 15 hours of manual assembly. Inter-rater agreement was moderate (Cohen's kappa 0.43 on the usable-versus-reject decision). A profile discovery study found the agent's recall close to human search. The agent's impact evidence spanned all four TSBM domains, and about a third of the reviewed findings fell in non-scholarly categories that routine processes tend to miss. Reviewers rated synthesis accuracy 4.5 and usefulness 4.8 on a 5-point scale. Conclusions. A human-in-the-loop AI agent can serve as the first-pass author of a scholar's impact record, shifting staff from collecting and writing to reviewing, and making cohort-scale impact reporting feasible.
ResearchQA: Benchmarking Citation-Grounded Question-Answering on Scientific Papers
Large language models are increasingly used to assist scientific reading, but existing evaluation methods often fail to detect whether answers are supported by verifiable citations. We introduce ResearchQA, a benchmark of 6,211 single-paper question-answer pairs from 494 open-access papers spanning eight domains and four question types: lookup, comprehension, multi-hop, and adversarial. ResearchQA is designed for citation-grounded evaluation: it permits multiple valid supporting passages for a claim and rewards grounded refusal when the source paper does not support an answer. We evaluate eight leading closed- and open-weight models in a citation-grounded chat-with-paper setting using a deterministic citation matcher and an LLM-based rubric evaluator. Citation-based metrics separate systems more clearly than LLM-evaluator scores: section coverage and citation accuracy vary substantially across models, while evaluator scores remain tightly compressed. We further find that open-weight models approach the best closed-model citation accuracy while achieving 3 to 6 times lower per-example latency. We release the benchmark, evaluation harness, and evaluator prompt.
Scientific Code Search at Scale: A Multi-Domain Dataset and Benchmark
Scientists increasingly rely on open-source tools to support their research workflows, yet discovering relevant software among over 600 million GitHub repositories remains challenging. Existing code search benchmarks focus on general software engineering tasks and fail to capture the domain-specific vocabulary and needs of scientific computing. We present a curated corpus of 5,264 high-quality, domain-classified scientific repositories spanning five NASA Science Mission Directorate divisions -- Earth Science, Astrophysics, Planetary Science, Heliophysics, and Biological & Physical Sciences -- enriched with cleaned READMEs, extracted topics, and additional context from crawled links. Building on this corpus, we introduce two novel information retrieval benchmarks: (1) a repository search benchmark with 219 expert-curated queries designed by domain scientists, and (2) a large-scale code snippet retrieval benchmark containing 117,950 code snippets and 119,720 queries across seven programming languages. Baseline evaluations on repository search reveal significant performance variation across scientific domains. Code snippet retrieval proves equally challenging, with substantial variation driven by differing documentation practices, coding standards, and programming language conventions across scientific communities. All datasets and benchmarks are publicly released on HuggingFace to support research on scientific tool discovery.
Bringing Agentic Search to Earth Observation Data Discovery
NASA and its data centers hold thousands of geoscience datasets and tools like Worldview, Giovanni, the Science Discovery Engine, and Harmony. Finding the right one is hard even for domain experts. We present an agentic search system, deployed as a public service for the geoscience community, that takes a natural-language research query and returns the matching datasets and tools. We demonstrate that, in the era of large language models, the latent value of knowledge graphs (KGs) can be substantially amplified through agentic search. From the NASA Earth Observation Knowledge Graph (NASA EO-KG) we derive NASA-EO-Bench, an open benchmark of 47k query-dataset pairs (21k task-based queries). A neural scorer fine-tuned on NASA-EO-Bench beats cosine and BM25 baselines. Further combining it with BM25 via score fusion raises both Recall@10 (R@10) and MRR by over 5x. On top of this supervised pipeline, we add a zero-shot agentic reranking stage that, without any additional training, lifts MRR by 28% on a stratified N=200 subset, showing that LLM reasoning is complementary to supervised retrieval.
DOSE-I: A Multimodal Biosignal Dataset of Procedural Sedation for Endoscopy -- Technical Report
In this document, we describe characteristics and technical details of the multimodal biosignal dataset DOSE-I of procedural sedation for endoscopy published on zenodo. The DOSE-I dataset includes 78.5 hours of recording in 171 records ranging from 6.7 to 70.8 minutes (mean: 27.5, SD: 11.6) of 281 endoscopic procedures. 1129 (median: 6 per record) transitions of consciousness and 7328 (median: 39 per record) individual sedation depth labels were recorded. In addition to clinically annotated biosignals, the DOSE-I dataset provides detailed static data about the respective study subject and metadata about the respective recordings. To further support future research, we provide details about artifact detection and preprocessed pEEG features, too. C code used for this preprocessing is provided separately via Github.
ScholarQuest: A Taxonomy-Guided Benchmark for Agentic Academic Paper Search in Open Literature Environments
Academic paper search is a core step in scientific research, and LLM-based search agents are emerging as a promising paradigm for iterative, intent-driven literature exploration. However, existing benchmarks are insufficient for systematically evaluating agentic academic search under realistic open literature environments. We propose ScholarQuest, a large-scale, taxonomy-guided benchmark for agentic academic paper search. ScholarQuest is constructed from over 1,000 computer science topics and four representative research intents, including method-oriented, setting-anchored, comparison-based, and scope-controlled queries. It further provides scalable answer construction and a shared retrieval backend ScholarBase for reproducible evaluation. Benchmarking results show that agentic methods outperform single-shot retrieval baselines, yet the best-performing agent only achieves 0.314 Recall@100 and 0.355 Recall@All, indicating substantial room for improvement. In addition, analyses of search efficiency, intent-level robustness, and failure cases further highlight the benchmark's ability to provide multi-dimensional evaluation signals for academic paper search agents.
ScholarSum: Student-Teacher Abstractive Summarization via Knowledge Graph Reasoning and Reflective Refinement
Abstractive summarization plays a crucial role in enabling efficient understanding of scientific literature, yet it inherently demands both linguistic fluency and factual faithfulness. Existing approaches often fail to reconcile these two requirements. Extractive methods rely on rigid sentence splicing that disrupts macro-level logical coherence, while large language model (LLM)-based generative approaches, despite mastering linguistic fluency, exhibit limited factual consistency. In this work, we propose ScholarSum, a hierarchical reflective graph-based framework that emulates a student-teacher writing process for fluent and faithful scientific summarization. ScholarSum first organizes the document into a hierarchical knowledge graph by segmenting it into semantically coherent units, whose multi-layered community structure captures global logic and macro-level themes. Guided by this global structure, the student generates an initial draft, which is subsequently refined through fine-grained evidence retrieval. To ensure factual consistency, a teacher-like reviewer then iteratively examines the draft, identifies unsupported content, and prompts targeted re-retrieval and rewriting until the summary meets rigorous quality standards. Extensive experiments demonstrate that ScholarSum significantly outperforms previous baselines in terms of both completeness and faithfulness. Our code is available at https://github.com/Xiaoyu-Tao/ScholarSum.
Report on CHIIR 2026 Workshop on Generative AI and Academic Search (GAI&AS)
This report summarizes the CHIIR 2026 Workshop on Generative AI and Academic Search (GAI&AS), which examined how GenAI is reshaping academic search systems and research practices. The workshop brought together researchers in human information interaction and information retrieval to explore key challenges and opportunities in designing and evaluating future academic search systems that integrate GenAI, moving beyond traditional document retrieval to support summarization, recommendation, synthesis, and conversational interaction. Participants' interests and discussions focused on three thematic clusters: foundations and principles, applications and opportunities, and search-as-learning. Across these themes, the workshop highlighted the importance of academic search systems in supporting transparency, credibility, research integrity, and long-term scholarly needs, as well as in fostering higher-order cognitive processes. Participants discussed guiding theories, design principles, methodological approaches, partnerships, and community-building efforts aimed at advancing human-centered GenAI-enhanced academic search systems. Overall, the workshop demonstrated strong community interest and a diverse range of ongoing and emerging research initiatives at the intersection of GenAI and academic search.
GIScholarBench: Benchmarking LLM Overconfidence in GIS Research
Large language models (LLMs) are increasingly used in academic research workflows, but scholarly tasks require high factual precision and therefore expose a key weakness: overconfidence. Here, overconfidence is defined behaviorally as the tendency to produce confident, assertive, and well-formatted outputs even when the underlying knowledge is incomplete or unverifiable, rather than as a calibration gap between stated confidence and accuracy. To examine this issue, we introduce GIScholarBench, a benchmark built from 10,865 papers published in 25 core GIScience journals between 2020 and 2025. The benchmark covers three tasks with increasing cognitive complexity: metadata retrieval, literature linking, and research direction generation. We evaluate Claude Sonnet 4.5, Gemini 3, and ChatGPT 5.3 through their native web interfaces under real-world user-facing conditions. Results show consistent overconfidence across all tasks. In metadata retrieval, ChatGPT 5.3 achieves the highest accuracy, but all models still generate definitive titles and DOIs when predictions are wrong. In literature linking, Claude Sonnet 4.5 recovers the most references, but all models show a clear gap between top-ranked retrieval and longer citation lists, suggesting that references are extended beyond reliable retrieval capacity. In research direction generation, AI-generated directions show lower topic coverage, higher novel miss rates, and lower semantic diversity than real future-citing papers. These findings suggest that LLM overconfidence is task-invariant but takes different forms: factual overgeneration in retrieval, unreliable citation expansion in literature linking, and overconfidence in output completeness during research ideation.
Whose Name Comes Up? III: Persona Prompting Effects in LLM-Based Scholar Recommendation
Large language models (LLMs) are increasingly used as scholar recommenders, shaping who is seen as an expert in academia. Existing audits remain English-centric, single discipline, and persona-agnostic, leaving the source of output variability poorly understood. To this end, we propose a benchmark that disentangles the effects of model choice and prompt design on recommendations. We audit 43 LLMs by varying persona prompts (language, location, role-and-task) and context (field, seniority, k). Recommended scholars are compared against Semantic Scholar over six scientific disciplines to measure technical quality (factuality, coverage) and social representativeness (diversity, parity). Basic technical quality is driven by model choice, factuality and parity by context, and diversity by location. South Africa prompts yield less factual lists, while Japan prompts yield highly factual but homogeneous lists skewed toward highly productive scholars. Prompt design is thus a non-trivial axis of LLM-based scholar discovery and should be systematically audited alongside model choice.
SciAtlas: A Large-Scale Knowledge Graph for Automated Scientific Research
The exponential growth of global academic output has confronted researchers and AI agents with an unprecedented
information explosion,'' where fragmented and unstructured knowledge organization impedes deep interdisciplinary integration. Current academic retrieval tools predominantly rely on superficial keyword matching or vector-space semantic retrieval, which lack the topological reasoning capabilities required to navigate complex logical connections. Agentic deep-research-based frameworks are often prone to logical hallucinations and consuming high inference costs. To bridge this gap, in this report, we introduce SciAtlas, a large-scale, multi-disciplinary, heterogeneous academic resource knowledge graph designed as a panoramic scientific evolution network. By integrating over 43M papers from 26 disciplines, and a total of 157M entities and 3B triplets, SciAtlas provides a structured topological cognitive substrate that dismantles disciplinary barriers and furnishes AI agents with a global perspective. Furthermore, we develop a neuro-symbolic retrieval algorithm featuring tri-path collaborative recall and graph reranking, achieving a seamless transition from simple semantic matching to deterministic association discovery. We also present key application directions of SciAtlas, including literature review, automated research trend synthesis, idea positioning, and academic trajectory exploration, to demonstrate that SciAtlas can serve as an effective cognitive map'' to empower the full loop of automated scientific research while significantly reducing reasoning costs. We have released the interfaces for KG retrieval and various downstream tasks in our GitHub repo.KadiAssistant: A conversational AI Agent for information retrieval in Kadi4Mat
We introduce KadiAssistant, a privacy-by-design AI assistant integrated into the Kadi research data ecosystem, enabling researchers to efficiently access, aggregate, and synthesize information from heterogeneous, privacy-sensitive research data. Interdisciplinary fields such as materials science bring together disciplines with their own terminology and standards. While this convergence fuels innovation, it also makes it increasingly difficult to connect and access knowledge, as data are distributed across disciplines, organizations, and individuals. For example, battery research combines electrochemical measurements, materials characterization data, physics-based simulations, and manufacturing parameters, each using different formats, vocabularies, and standards. Efficiently storing and sharing such heterogeneous data via research data platforms, such as Kadi4Mat, demands domain knowledge, technical expertise, and familiarity with metadata schemas and interfaces. Research data also vary in sensitivity: newly generated 'warm' data are often private, whereas published 'cold' data are usually openly accessible. The Kadi ecosystem offers fine-grained access control needed for sensitive data. A solution for efficient information retrieval in Kadi must therefore respect the fine-grained access permissions. To address these intertwined challenges of information retrieval, strong data privacy, and complex access control, KadiAssistant combines a self-hosted large language model (LLM) with a privacy-preserving semantic search, inspired by retrieval-augmented generation, that can access files and record metadata on Kadi. This allows the assistant to screen, aggregate, and structure information into a highly informative answer. KadiAssistant therefore bridges terminology and standards, lowers access barriers for researchers, and strengthens the Findable pillar of FAIR data principles.
DocScope: Benchmarking Verifiable Reasoning for Trustworthy Long-Document Understanding
Evaluating whether Multimodal Large Language Models can produce trustworthy, verifiable reasoning over long, visually rich documents requires evaluation beyond end-to-end answer accuracy. We introduce DocScope, a benchmark that formulates long-document QA as a structured reasoning trajectory prediction problem: given a complete PDF document and a question, the model outputs evidence pages, supporting evidence regions, relevant factual statements, and a final answer. We design a four-stage evaluation protocol -- Page Localization, Region Grounding, Fact Extraction, and Answer Verification -- that audits each level of the trajectory independently through inter-stage decoupling, with all judges selected and calibrated via human alignment studies. DocScope comprises 1,124 questions derived from 273 documents, with all hierarchical evidence annotations completed by human annotators. We benchmark 6 proprietary models, 12 open-weight models, and several domain-specific systems. Our experiments reveal that answer accuracy cannot substitute for trajectory-level evaluation: even among correct answers, the highest observed rate of complete evidence chains is only 29%. Across all models, region grounding remains the weakest trajectory stage. Furthermore, the primary difficulty stems from aggregating evidence dispersed across long distances and multiple document clusters, while an oracle study identifies faithful perception and fact extraction as the dominant capability bottleneck. Cross-architecture comparisons further suggest that activated parameter count matters more than total scale. The benchmark and code will be publicly released at https://github.com/MiliLab/DocScope.
TCMIIES: A Browser-Based LLM-Powered Intelligent Information Extraction System for Academic Literature
The exponential growth of academic publications has created an urgent need for automated tools capable of extracting structured knowledge from unstructured scientific texts. While large language models (LLMs) have demonstrated remarkable capabilities in natural language understanding and information extraction, existing solutions often require specialized infrastructure, programming expertise, or fine-tuned domain-specific models that create barriers for researchers in specialized fields. This paper presents TCMIIES, a browser-based, zero-installation platform that leverages commercial LLM APIs to perform structured information extraction from academic literature. The system employs a novel schema-guided prompting framework with automatic system prompt generation, enabling researchers to define custom extraction schemas through an intuitive graphical interface without any programming. TCMIIES features a pure front-end architecture that ensures data privacy by processing all information locally in the browser, supports five major LLM providers, implements concurrent batch processing with automatic retry mechanisms, and provides intelligent field mapping for Chinese academic databases including CNKI and Wanfang. We demonstrate the system's effectiveness through comprehensive evaluation across multiple extraction scenarios in Traditional Chinese Medicine research, achieving structured output compliance rates exceeding 94% and information extraction accuracy comparable to domain-expert annotation. The system represents a practical, accessible solution that bridges the gap between advanced LLM capabilities and domain-specific academic information extraction needs, particularly for researchers in specialized fields who require flexible, privacy-preserving, and cost-effective extraction tools.
Automating Categorization of Scientific Texts with In-Context Learning and Prompt-Chaining in Large Language Models
The relentless expansion of scientific literature presents significant challenges for navigation and knowledge discovery. Within Research Information Retrieval, established tasks such as text summarization and classification remain crucial for enabling researchers and practitioners to effectively navigate this vast landscape, so that efforts have increasingly been focused on developing advanced research information systems. These systems aim not only to provide standard keyword-based search functionalities but also to incorporate capabilities for automatic content categorization within knowledge-intensive organizations across academia and industry. This study systematically evaluates the performance of off-the-shelf Large Language Models (LLMs) in analyzing scientific texts according to a given classification scheme. We utilized the hierarchical ORKG taxonomy as a classification framework, employing the FORC dataset as ground truth. We investigated the effectiveness of advanced prompt engineering strategies, namely In-Context Learning (ICL) and Prompt Chaining, and experimentally explored the influence of the LLMs' temperature hyperparameter on classification accuracy. Our experiments demonstrate that Prompt Chaining yields superior classification accuracy compared to pure ICL, particularly when applied to the nested structure of the ORKG taxonomy. LLMs with prompt chaining outperform the state-of-the-art models for domain (1st level) prediction and show even better performance for subject (2nd level) prediction compared to the older BERT model. However, LLMs are not yet able to perform well in classifying the topic (3rd level) of research areas based on this specific hierarchical taxonomy, as they only reach about 50% accuracy even with prompt chaining.
Rethinking Publication: A Certification Framework for AI-Enabled Research
AI research pipelines can now generate academic work that may satisfy existing peer review standards for quality, novelty, and methodological rigor. However, the publication system was built around the assumption that research is produced by human authors. It therefore lacks a clear way to evaluate work when the knowledge claim may be valid but the producer is partly or fully automated. This paper proposes a two-layer certification framework for AI-generated research. The first layer evaluates whether the knowledge claim is sound. The second layer evaluates the level of human contribution. This separation allows journals and conferences to assess pipeline-generated work more consistently without creating new institutions. The framework uses normative analysis, conceptual design, and dry-run validation against representative submission cases. It classifies human contribution into three categories: Category A, where the work is reachable by an automated pipeline; Category B, where human direction is required at identifiable stages; and Category C, where the work goes beyond current pipeline capability, especially at the problem-formulation stage. The paper also proposes dedicated benchmark slots for fully disclosed automated research. These slots would provide a transparent publication path and help reviewers calibrate judgments over time. The key argument is that publication has historically certified two things at once: that the knowledge is valid and that a human produced it. AI research pipelines separate these two claims. By decoupling knowledge certification from authorship attribution, the proposed framework responds to a structural change already underway. It can be implemented within existing editorial systems, works even when attribution is uncertain, and recognizes human frontier contribution based on epistemic value rather than human origin alone.
On Accelerating Grounded Code Development for Research
A major challenge for niche scientific and technical domains in leveraging coding agents is the lack of access to up-to-date, domain- specific knowledge. Foundational models often demonstrate limited reasoning capabilities in specialized fields and cannot inherently incorporate knowledge that evolves through ongoing research and experimentation. Materials scientists exploring novel compounds, communication engineers designing and evaluating new protocols, and bioengineering researchers conducting iterative experiments all face this limitation. These experts typically lack the resources to fine-tune large models or continuously embed new findings, creating a barrier to adopting AI-driven coding agents. To address this, we introduce a framework that gives coding agents instanta- neous access to research repositories and technical documentation, enabling real-time, context-aware operation. Our open-source im- plementation allows users to upload documents via doc-search.dev and includes zed-fork, which enforces domain-specific rules and workflows. Together, these tools accelerate the integration of coding agents into specialized scientific and technical workflows
Document-as-Image Representations Fall Short for Scientific Retrieval
Many recent document embedding models are trained on document-as-image representations, embedding rendered pages as images rather than the underlying source. Meanwhile, existing benchmarks for scientific document retrieval, such as ArXivQA and ViDoRe, treat documents as images of pages, implicitly favoring such representations. In this work, we argue that this paradigm is not well-suited for text-rich multimodal scientific documents, where critical evidence is distributed across structured sources, including text, tables, and figures. To study this setting, we introduce ArXivDoc, a new benchmark constructed from the underlying LaTeX sources of scientific papers. Unlike PDF or image-based representations, LaTeX provides direct access to structured elements (e.g., sections, tables, figures, equations), enabling controlled query construction grounded in specific evidence types. We systematically compare text-only, image-based, and multimodal representations across both single-vector and multi-vector retrieval models. Our results show that: (1) document-as-image representations are consistently suboptimal, especially as document length increases; (2) text-based representations are most effective, even for figure-based queries, by leveraging captions and surrounding context; and (3) interleaved text+image representations outperform document-as-image approaches without requiring specialized training.
Matlas: A Semantic Search Engine for Mathematics
Retrieving mathematical knowledge is a central task in both human-driven research, such as determining whether a result already exists, finding related results, and identifying historical origins, and in emerging AI systems for mathematics, where reliable grounding is essential. However, the scale and structure of the mathematical literature pose significant challenges: results are distributed across millions of documents, and individual statements are often difficult to interpret in isolation due to their dependence on prior definitions and theorems. In this paper, we introduce Matlas, a semantic search engine for mathematical statements. Matlas is built on a large-scale corpus of 8.07 million statements extracted from 435K peer-reviewed papers spanning 1826 to 2025, drawn from a curated set of 180 journals selected using an ICM citation-based criterion, together with 1.9K textbooks. From these sources, we extract mathematical statements together with their dependencies, construct document-level dependency graphs, and recursively unfold statements in topological order to produce more self-contained representations. On top of this corpus, we develop a semantic retrieval system that enables efficient search for mathematical results using natural language queries. We hope that Matlas can improve the efficiency of theorem retrieval for mathematicians and provide a structured source of grounding for AI systems tackling research-level mathematical problems, and serve as part of the infrastructure for mathematical knowledge retrieval.
The Relic Condition: When Published Scholarship Becomes Material for Its Own Replacement
We extracted the scholarly reasoning systems of two internationally prominent humanities and social science scholars from their published corpora alone, converted those systems into structured inference-time constraints for a large language model, and tested whether the resulting scholar-bots could perform core academic functions at expert-assessed quality. The distillation pipeline used an eight-layer extraction method and a nine-module skill architecture grounded in local, closed-corpus analysis. The scholar-bots were then deployed across doctoral supervision, peer review, lecturing and panel-style academic exchange. Expert assessment involved three senior academics producing reports and appointment-level syntheses. Across the preserved expert record, all review and supervision reports judged the outputs benchmark-attaining, appointment-level recommendations placed both bots at or above Senior Lecturer level in the Australian university system, and recovered panel scores placed Scholar A between 7.9 and 8.9/10 and Scholar B between 8.5 and 8.9/10 under multi-turn debate conditions. A research-degree-student survey showed high performance ratings across information reliability, theoretical depth and logical rigor, with pronounced ceiling effects on a 7-point scale, despite all participants already being frontier-model users. We term this the Relic condition: when publication systems make stable reasoning architectures legible, extractable and cheaply deployable, the public record of intellectual labor becomes raw material for its own functional replacement. Because the technical threshold for this transition is already crossed at modest engineering effort, we argue that the window for protective frameworks covering disclosure, consent, compensation and deployment restriction is the present, while deployment remains optional rather than infrastructural.
ScheMatiQ: From Research Question to Structured Data through Interactive Schema Discovery
Many disciplines pose natural-language research questions over large document collections whose answers typically require structured evidence, traditionally obtained by manually designing an annotation schema and exhaustively labeling the corpus, a slow and error-prone process. We introduce ScheMatiQ, which leverages calls to a backbone LLM to take a question and a corpus to produce a schema and a grounded database, with a web interface that lets steer and revise the extraction. In collaboration with domain experts, we show that ScheMatiQ yields outputs that support real-world analysis in law and computational biology. We release ScheMatiQ as open source with a public web interface, and invite experts across disciplines to use it with their own data. All resources, including the website, source code, and demonstration video, are available at: www.ScheMatiQ-ai.com
Retrieval of Scientific and Technological Resources for Experts and Scholars
Institutions of higher learning, research institutes and other scientific research units have abundant scientific and technological resources of experts and scholars, and these talents with great scientific and technological innovation ability are an important force to promote industrial upgrading. The scientific and technological resources of experts and scholars are mainly composed of basic attributes and scientific research achievements. The basic attributes include information such as research interests, institutions, and educational work experience. However, due to information asymmetry and other reasons, the scientific and technological resources of experts and scholars cannot be connected with the society in a timely manner, and social needs cannot be accurately matched with experts and scholars. Therefore, it is very necessary to build an expert and scholar information database and provide relevant expert and scholar retrieval services. This paper sorts out the related research work in this field from four aspects: text relation extraction, text knowledge representation learning, text vector retrieval and visualization system.