Sequence Modeling

Self-attention is a ubiquitous primitive in modern sequence models, yet its operator-level geometry is only partially understood. We view a token sequence as a vector field over the token-position graph and identify attention as a connection walk: messages are aggregated by a nonnegative walk matrix while being transported along each edge by a learned linear map. Within this framework, we prove that single-head attention (SHA) is exactly a connection propagation step with constant transport, and that multi-head attention (MHA) is exactly a single edge-dependent connection walk whose effective transport is an attention-gated mixture of headwise transports. We further clarify the conditions under which the corresponding generator reduces to a random-walk connection Laplacian, highlighting the roles of stochasticity, reversibility, and metric-compatible transports. Empirically, we find that trained Transformers across scales (from 124M to 8B) and structures (encoder/decoder) exhibit geometric structure consistent with our theory: effective attention graphs converge to stable geometric operators in deeper layers, learned transports self-organize into approximate scaled isometries, and both phenomena strengthen consistently with scale. Overall, the paper provides a precise connection-walk formalism that links self-attention to classical geometric operators, along with a set of operator-level tools for analyzing transformer models from a geometric perspective.

State Space Models (SSMs) have emerged as a powerful paradigm for efficient long-sequence modeling, offering parallel training and fast linear-time recurrent inference. However, like other recurrent architectures, SSMs must compress an unbounded history into a fixed-size state, which limits context retention and makes precise retrieval over long-range context inherently difficult. To overcome this limitation, we propose Delay State Space Models (DSSMs), a delay differential equation (DDE)-inspired extension of diagonal SSMs that augments discrete SSM recurrences with explicit delayed-state feedback. Making explicit delayed feedback practical requires new stability parameterization, history management, and FFT-training tools. We address these challenges with a practical discretization and parameterization grounded in a simple delay-independent stability condition. To bypass direct time-domain kernel construction, we derive the DSSM transfer function and compute kernels in the frequency domain, using a kernel contour shift to suppress aliasing and recover accurate FFT training. Empirically, DSSMs substantially improve targeted delayed-retrieval tasks while outperforming S4D on most standard sequence metrics and remaining close on the others.

Fixed-state sequence models compress an unbounded past into a bounded state, which caps their associative recall at roughly the state dimension; attention escapes the cap by keeping a key-value entry for every token, at quadratic compute and a cache that grows with the sequence. We study the middle ground: a sparse cache that allocates a slot only when an input is novel, so its size tracks the number of distinct items rather than the number of tokens. The allocation rule is the DP-means clustering rule, the small-variance limit of a Dirichlet-process mixture, used not as latent-variable inference but as the key-value memory operator for a deep recurrent backbone. We develop it in two forms, a static cache with a fixed concentration and a surprise-adaptive variant whose concentration follows the recent novelty rate. On a controlled associative-recall benchmark with redundancy we show that the cache matches full-attention recall while storing only the distinct items, that it dominates a fixed-budget eviction cache on the recall-versus-size frontier, and that on a state-space backbone it answers both a recall query and a long-range aggregate at the lowest memory of any model tested. The allocation is learnable end to end: a two-parameter novelty-threshold gate trained on the task loss alone recovers the rule exactly, whereas an over-parameterized gate fails, so the operative ingredient is the inductive bias rather than capacity. The evidence is a family of controlled mechanism studies at modest scale, with the distinct-items property confirmed on four real streams (recommendation, systems logs, clinical events, and insurance claims); a real-backbone, real-corpus language validation is pursued in a companion study.

Procedural generation of music game levels is an exciting yet challenging problem, as levels must translate musical structure into interactive sequences of timed gameplay events. Most existing approaches formulate this task by frame-based representations, dividing audio into uniform time grids and predicting events at each frame. This makes gameplay events implicit across many frames. As a result, it is hard to describe event-level timing relations and longer-range structure found in human-authored levels. We use procedural generation as a practical setting to study how musical cues map to interactive event sequences. Inspired by event-based symbolic music modeling, we propose a token-level sequence formulation that casts level generation as a multimodal sequence-to-sequence problem. Conditioned on an audio excerpt and level metadata, the model generates a token sequence alternating gameplay-event and beat-shift tokens. This explicitly represents actions and their relative timing in beat space. Based on this formulation, we build a Transformer model. It outperforms representative frame-level baselines under event-level evaluation. It also enables systematic analysis of how audio supports rhythm-aligned event prediction beyond metadata conditioning.

Dependency parsing consists of finding a tree representation for a sequence. Unsupervised dependency parsing aims to develop parsing methods without a gold standard during model training. In human languages, an unsupervised parser can be evaluated because some gold standard is usually available or can be created. For other species, a gold standard is unknown. Thus one may conclude that it is impossible to determine the accuracy of an unsupervised parser and, consequently, dependency parsing is unfeasible in other species. However, here we apply recent advances in network science to demonstrate that the proportion of correct edges retrieved by a parser must be high for the sequences of vocalizations or gestures that non-human primates produce due to the fast decay of the sequence length distribution. In contrast, human language sequences lack that property. Therefore, evaluation without a gold standard is feasible in non-human primates but a hard problem in humans.

Image outpainting extends an image beyond its original borders, requiring seamless style integration and globally coherent scene completion. Building on the success of diffusion models, recent methods have achieved substantial improvements in visual quality. In practice, however, high-resolution outpainting is commonly performed via progressive expansion around a fixed source image, particularly in artwork scenarios. Despite this progress, existing approaches still suffer from three key limitations: (i) the absence of a reliable global planning mechanism, which leads to structural instability and error accumulation at high resolutions; (ii) limited spatial controllability beyond text prompts, making it difficult to place objects at user-specified locations; and (iii) high inference latency caused by inherently sequential patch generation. To address these issues, we propose a global blueprint-guided two-stage diffusion framework for layout-controllable high-resolution outpainting with efficient parallel synthesis. In Stage 1, we generate a low-resolution global blueprint using a layout adapter that injects bounding-box conditions into a Stable Diffusion inpainting backbone, producing a globally consistent structural plan while extracting global guidance features. In Stage 2, we synthesize high-resolution local patches in parallel by injecting the blueprint-derived global guidance and initializing each patch from the blueprint using the low-frequency preservation property of forward diffusion. This design eliminates sequential dependency while maintaining global coherence. Extensive experiments on large-scale artwork datasets demonstrate improved visual fidelity, stronger semantic consistency, and substantially reduced inference time compared to prior baselines, while uniquely supporting explicit layout control for artwork outpainting.

Recommendation systems have undergone significant transformations in the past years. The transition from traditional feature interaction modules to generative next-action prediction has pushed the boundaries of personalized content. Developments have largely evolved along two separate tracks. Sequence modeling approaches on the one hand and feature interaction methods on the other. In this paper, we introduce Bumblebee, a recommendation architecture that addresses the lack of interaction between the two directions through an interleaved, stackable block design. Each block implements a micro-pipeline of layers combining sequence personalization, attention-based encoding, and feature crossing into a self-contained unit. Every block produces a joint representation of both feature modalities which is consumed by the next block in the sequence. This mechanism encourages early and repeated mixture of modalities and enriches downstream features with additional contextual information. Residual connections between blocks create cross-modal information pathways and yield additional predictive performance without adding additional parameters. Blocks can be specialized by selectively dropping components, enabling flexible trade-offs between quality and throughput. We evaluate our approach on large-scale industrial data and show consistent improvements over comparable baseline models across several classification and regression tasks. Furthermore, we conduct ablation studies to confirm that the interleaved composition itself is the primary driver of these improvements. Our results suggest that interleaving heterogeneous functional units, rather than composing deep stacks, is a promising paradigm for future-generation recommendation architectures.

Modern sequence models have a striking capacity for in-context learning (ICL); they can perform new tasks based only on examples given in the prompt. Understanding how this ability emerges requires theory that captures important properties of natural data. Linear regression has served as a useful sandbox for ICL theory, but existing work has largely focused on prompts with independent examples. In this work, we extend this setting to sequentially correlated data, a basic feature of real sequences. We present a solvable model based on linear attention and test our predictions on realistic transformer architectures. We identify two distinct effects: First, when the query token is independent of the context, within-context correlations induce an effective context length: correlated prompts behave like shorter i.i.d. prompts. Second, when the query is also correlated with its context, test error is reduced, particularly for softmax attention when compared to linear attention. These results suggest that correlated prompts alter not only the effective sample size of in-context learning, but also which attention architectures are best matched to the task.

Knowing which training examples drive outputs is fundamental to auditing, correcting, and understanding language models, yet for modern LLMs this remains expensive, approximate, and largely post-hoc. Standard language models generate tokens through a dense network pathway, causing training data's influence to be distributed across parameters rather than organized along explicit, traceable components. We introduce a prototype language model architecture, Prototypes for Interpretable Sequence Modeling (PRISM), that forms each prediction via a sparse, non-negative mixture of learned prototypes, trained with clustering objectives that anchor each prototype to coherent neighborhoods of training examples. Across architectures from 130M to 1.6B parameters trained on up to 50B tokens, prototype language models either surpass or remain within 2.5 percentage points on average downstream accuracy of matched dense baselines. We show that sparse prototype structure localizes curvature in the loss landscape, yielding a more tractable Hessian and enabling training data attribution that is ~500x faster than post hoc baselines when consuming equivalent memory. Calibrating linear prototype controllers can improve downstream accuracy by roughly 3 points while tracing those corrections back to training neighborhoods, and targeted prototype suppression can remove model behaviors without finetuning or measurable loss in generation quality.

Recent LLM agents benefit from skills for solving complex tasks. Skills encapsulate modular packages of procedural knowledge and instructions for performing specialized tasks, such as setting up a sandboxed environment, running a test suite, or refactoring a function across multiple files. As skill libraries grow and become reusable across tasks and domains, selecting an appropriate skill composition has emerged as a central bottleneck. Existing approaches fall into two categories. One exposes the agent's reasoning to the entire skill collection; the other performs skill retrieval via embeddings or LLM-based rerankers. Both provide useful insights; however, they miss the structural nature of skill composition, which is a joint decision over which skills, how many, and in what order -- three dimensions that cannot be decoupled. We formalize this as structured skill composition: given a task and a skill library, predict an executable skill plan that jointly specifies the activated subset, count, and execution order. We propose SkillComposer, which instantiates structured skill composition as task-conditioned skill sequence prediction. SkillComposer uses a constrained autoregressive decoder over skill identifiers, so subset, count, and order emerge jointly from a single decoding pass, and dependencies between successive skills are captured naturally. We build a training set of task-composition pairs from a real, human-curated skill library. We then evaluate SkillComposer along two axes: composition quality on a held-out test set, and downstream task success on SkillsBench across two production-grade coding agents. On GPT-5.2-Codex, Gemini-3-Pro-Preview, SkillComposer raises the pass rate by +23.1, +18.2pp over the no-skill baseline, surpassing top-3 retrieval and matching the gold-skill retrieval upper bound at lower prompt-token cost.

State space models (SSMs) have emerged as efficient linear-time alternatives to attention for long-sequence modeling. However, existing SSMs often suffer from instability and memory degradation over extended horizons due to poorly conditioned first-order updates and unbalanced update geometry. We introduce MuonSSM, a general framework that stabilizes SSM training by explicitly conditioning the geometry of memory updates rather than the recurrent transition matrix. MuonSSM augments SSMs with a momentum-based pathway and a lightweight Newton Schulz transformation on low-rank input injections, yielding bounded and spectrally conditioned updates while preserving parallel scan complexity. Theory shows that MuonSSM improves gradient propagation, mitigates spectral amplification, and enriches memory representations over long horizons. Extensive experiments across language, vision, and time-series benchmarks show consistent gains in accuracy, robustness, and long-context performance when integrated into diverse SSM backbones. These results establish geometric conditioning of updates as a principled pathway to stable, scalable sequence modeling.

In this paper, we aim to combine the advantages of existing sequence parallelism paradigms and overcomes their drawbacks, the most serious of which is the incapability to correctly compute causal attention on the hybrid-context packed sequences, in a stronger sequence parallelism framework. The practical technique of packing sequences for efficiently pretraining and fine-tuning large language models causes cross-contamination problem in attention computation, which can be effectively solved when no parallelism in the sequence length dimension is taken. However, in sequence parallelism, existing approaches either ignore the scenario of hybrid-context sequences or conversely sacrifice and limit parallelism degree for supporting the scenario. To this end, we innovatively propose an efficient Sequence-Aware Parallelism algorithm to conquer the obstacles of intensive tensor transmission and partial attention computation across multiple device groups. Our algorithm utilizes JIT (Just-In-Time) compilation to optimize the communication strategy of all device groups in NCCL level. Further, we integrate existing sequence parallelism paradigms into a Hierarchical Sequence-Aware Parallelism framework which benefits from our sequence-aware algorithm. We additionally elaborate on the memory and communication overhead management of the hierarchical framework to optimize its performance. Through multiple experiments, we demonstrate that our proposed approach outperform other state-of-the-arts sequence parallelism approches in multiple metrics.

Sequence learning has emerged as the promising paradigm in recommendation systems, surpassing traditional Deep Learning Recommendation Models (DLRM) by capturing the temporal nuances of user behavior. However, current state-of-the-art architectures operate under a limiting analogy: they treat user history as a monolithic chronological sequence like a sentence in a Large Language Model (LLM). We observe a fundamental divergence between natural language and recommendation data: unlike the linear, logical flow of text, user history is inherently multi-faceted. A user's journey is a fragmented reflection of diverse interests, resulting in much weaker coherence between items than is found in LLM training data. This lack of structural unity leads to context pollution. In single-sequence modeling, unrelated behaviors compete for the same attention budget. This "noisy" signal dilutes the model's focus, effectively capping its ability to discern high-intent patterns from background activity. To address this, we propose Constructive Multi-Sequence Learning (CMSL), a paradigm shift from passive sequence ingestion to active "context engineering" that constructs multiple coherent sequences in latent space. CMSL leverages a learnable Sequence Construction Module to disentangle user history into "pure" thematic strands, followed by a linear attention mechanism to efficiently model these strands at scale. CMSL has been deployed across ranking and retrieval tasks and across four major surfaces at Meta.

Protein language models are standard priors for biological sequence generation, but steering them toward explicit distributional design targets remains largely unexplored. We study a constrained protein generation problem in which sequences must match a desired amino-acid (AA) composition profile while preserving plausible sequence statistics and diversity. The motivating application is synthetic feed protein design, where the AA composition of dietary proteins directly determines their nutritional value. We propose a two-stage pipeline in which domain-adaptive fine-tuning (FT) on an in-domain protein dataset is followed by iterative reward-weighted FT via reinforcement learning (RL) anchored against the FT model as a frozen reference. We evaluate the pipeline on two AA compositions and find that FT brings the average composition close to the target, while the subsequent RL enforces specific sequence constraints that FT alone cannot satisfy. We additionally evaluate the design choices of the proposed composition reward term against two baselines and an ablated variant, isolate the contribution of each training stage, and verify that AA composition alignment is achieved without degrading sequence quality.

A minute lexical variation can reverse the procedural meaning of an instruction even when the rest of the sentence remains unchanged. In automotive maintenance instructions, this pattern often appears when an action phrase turns an instruction into its procedural counterpart. The entities, modifiers, and surrounding context remain largely invariant, while the action phrase determines the procedural relation. We define this task as Complementary Action Modeling (CAM). Given a maintenance instruction, the goal is to identify or generate its procedural counterpart by modifying the action phrase while preserving the remaining sentence context. This task focuses on three aspects: distinguishing complementarity from surface similarity, controlling generation at the action-phrase level, and evaluating relational correctness using retrieval, overlap-based, and human evaluation. Using a German automotive maintenance dataset, we examine these questions through candidate matching and controlled Seq2Seq generation. The results show that complementary maintenance instructions are best modeled as procedural associations grounded in subtle lexical cues. They should therefore not be treated as ordinary cases of sentence similarity or synonym-based paraphrasing.

Compositional generalization, the ability to solve complex problems by combining solutions to simpler sub-problems, is a fundamental capability of both natural and artificial intelligence, and a key mechanism underlying chain-of-thought reasoning. However, the theoretical underpinnings of compositional generalization remain poorly understood: when and why does decomposing a problem into parts yield more efficient learning than solving it directly? We study this question through the canonical problem of learning to simulate semiautomata (predicting the outcome of $T$ steps of sequential computation), a model that captures state tracking, regular language recognition, and modular arithmetic. We show that an autocurriculum-based approach building on Part I of this series, recursively decomposing longer sequences into shorter sub-problems, learning to solve them, and composing the solutions, achieves dramatically better statistical complexity than direct methods. (i) For a setting inspired by supervised fine-tuning (SFT) where the learner receives interactive feedback on intermediate states of the computation, curriculum facilitates learning from only $2^{\mathcal{O}(\sqrt{\log T})}$ tokens of supervision; i.e., subpolynomial in the sequence length $T$, overcoming the $Ω(T)$ token barrier required by direct simulation. (ii) For a setting inspired by reinforcement learning with verifiable rewards (RLVR), where the learner improves a pre-trained reference model using an outcome verifier, we show that curriculum reduces the requirement on the reference model from coverage at the full sequence length $T$ to coverage at a shorter block length $B \ll T$, an exponentially weaker condition.

Prompt injection is the top security risk for LLM-integrated applications, yet every defense proposed so far has been broken. We prove this is not a coincidence: in shared-embedding architectures that lack enforced control-data separation, perfect prompt-injection prevention is mathematically impossible. We formalize prompted systems as Prompted Action Models whose outputs include control-authoritative actions: refusal decisions, tool authorization, policy routing, and memory writes. We define Semantic-Faithful Control (SFC), the property that such behavior depends only on the meaning of untrusted input, not on how it is encoded. We then prove SFC is unachievable within the shared pipeline, via three results: a provenance-recovery impossibility (shared representations make trusted and untrusted content statistically inseparable, bounded by total variation distance); control-path exposure (untrusted tokens enter control-relevant computation through the same attention value-aggregation that determines outputs); and a finite-coverage invariance gap (finite training cannot certify invariance over infinite semantic-equivalence classes). We ground each quantity in measurements on production tokenizers and models. The result is structural, not a gap in current defenses. It mirrors the code-data confusion in Von Neumann machines that gives rise to buffer overflows, a vulnerability class that took decades of layered defenses (DEP, Write-XOR-Execute, ASLR, stack canaries, and ultimately memory-safe languages) to contain, because no single mechanism sufficed. The implication is the same: prompt injection cannot be eliminated by better in-pipeline classification or alignment alone. It requires architectural separation of instruction and data channels. We identify the root cause and the class of solution it demands.

While parameter-efficient fine-tuning (PEFT) typically targets attention projectors, its efficacy for tasks requiring sequential state accumulation remains under-explored. We examine if PEFT for such tasks can benefit from state space model (SSMs) adapters, and if MLP blocks are better injection sites. We introduce Hankel Reduced order Model (HRM) adapter, an SSM-based residual module initialized via Balanced Truncation of empirical Hankel Grammians. By leveraging the time-invariance of the system matrix $\bar{A}$, HRM enables an exact FFT-based parallel scan, achieving computational parity with LoRA across all context lengths. In iso-parametric evaluations on Mistral-7B (8.4M trainable parameters), HRM outperforms LoRA variants on LongBench tasks, including QuALITY (+34.8% relative accuracy) and QMSum (+71.6% relative ROUGE-1). HRM further demonstrates consistent superiority across 18 configurations of synthetic state-tracking (DFA, Parity) and character-level language modeling (enwik8). Gate analysis reveals that HRM adapters effectively learn to modulate recurrence, providing a robust architectural alternative to low-rank adaptation for long-context sequence modeling.

Recent advances in sequence modeling have significantly improved ASR systems, bringing them close to human-level recognition accuracy and enhancing robustness across diverse acoustic conditions and languages. In contrast, Forced Alignment has not experienced comparable progress, and traditional HMM-GMM frameworks remain widely adopted and highly competitive. To address this gap, we propose an end-to-end, fully differentiable neural architecture specifically designed for phoneme alignment. The model consists of an encoder that processes the input signal and a decoder that produces alignment decisions. The encoder is structured into two complementary branches: one dedicated to phoneme identity verification and the other to phoneme boundary detection. The decoder is implemented as a trainable module based on differentiable soft dynamic programming. The entire system is optimized end-to-end using a novel contrastive loss that encourages clear separation between steady-state phoneme regions and transition boundaries. The proposed approach outperforms the current state of the art in phoneme alignment on hand-annotated English benchmarks, achieves strong word-level generalization results, and demonstrates generalization on unseen languages.

We present a new method for structural sequence analysis grounded in Algorithmic Information Theory (AIT). At its core is the Ladderpath approach, which extracts nested and hierarchical relationships among repeated substructures in linguistic sequences -- an instantiation of AIT's principle of describing data through minimal generative programs. These structures are then used to define three distance measures: a normalized compression distance (NCD), and two alternative distances derived directly from the Ladderpath representation. Integrated with a $k$-nearest neighbor classifier, these distances achieve strong and consistent performance across in-distribution, out-of-distribution (OOD), and few-shot text classification tasks. In particular, all three methods outperform both gzip-based NCD and BERT under OOD and low-resource settings. These results demonstrate that the structured representations captured by Ladderpath preserve intrinsic properties of sequences and provide a lightweight, interpretable, and training-free alternative for text modeling. This work highlights the potential of AIT-based approaches for structural and domain-agnostic sequence understanding.

End-to-end OCR increasingly relies on autoregressive sequence models, where the quadratic cost of Transformer attention limits efficient transcription of long, paragraph-level text. State-Space Models (SSMs) such as Mamba offer linear-time decoding and have recently been shown to match Transformer accuracy on printed historical lines, but their behavior as sequences grow from short lines to full paragraphs, and their generalization to handwriting, remain poorly understood. We study how a Mamba-based OCR recognizer scales from lines to paragraphs. We first conduct a systematic exploration of its four core hyperparameters (decoder depth, state dimension, expansion factor, and connector depth) on synthetic paragraphs from 100 to 1,000 characters, identifying the recurrent state dimension and the expansion factor as the dominant levers for long-sequence accuracy. We then compare the recognizer against a Transformer baseline trained under an identical protocol. On clean synthetic paragraphs, both models stay below 1% CER at every length while the SSM runs 1.4 to 4.5 times faster, the speedup growing with sequence length. On real handwriting, however, the SSM lags clearly behind: it reaches 8.2% CER on IAM lines and 10.0% on IAM paragraphs, against 4.2% and 3.5% for the Transformer baseline. Through controlled experiments we show that a substantial part of this gap stems from data scarcity rather than from an intrinsic architectural limit: the autoregressive SSM decoder is markedly data-hungry on long sequences. Our study clarifies when SSMs are a practical choice for large-scale document transcription and when they are not.

Modern deep neural network architectures are trained via backpropagation, which requires errors to be sequentially propagated through all layers before parameters can be updated. This introduces two limitations: locking, where layer-wise updates are strictly interdependent and cannot proceed in parallel, and the weight transport problem, which requires symmetric forward and backward pathways for exact gradient computation. These constraints restrict parallelism, increase memory and communication overhead, and pose challenges for scalable learning. In this work, we propose Hierarchical Block-Local Learning (HBLL), a framework that decomposes deep neural networks into hierarchically linked blocks trained using local learning objectives derived from variational principles, eliminating the need for full end-to-end backpropagation while maintaining effective information propagation across the network. HBLL is the first algorithm that is able to train deep neural networks in $\mathcal{O}(\log N)$ parallel time complexity, where $N$ is the number of network layers. We show that HBLL implicitly defines a family of subnetworks corresponding to different hierarchical paths, enabling flexible inference with different effective numbers of layers. We evaluate HBLL on a set of challenging vision and language modeling tasks, achieving competitive performance. We also extend HBLL to recurrent sequence architectures, applying to settings that otherwise rely on backpropagation through time.

Existing sequence models, including RNNs, LSTMs, continuous-time networks, and Transformers, share a common structural principle: layer-wise dynamics, where all neurons in the same layer co-evolve through a shared parameterized operator, leaving individual neurons no freedom to evolve independently. Yet in many complex dynamical systems, rich global behavior emerges precisely from locally evolving units interacting through structured connectivity. Inspired by this principle, we introduce Topological Neural Dynamics (TND), a sequence modeling framework that shifts computation from layer-wise to neuron-wise dynamics. TND represents a neural system as a directed neuron graph, an interaction operator, and a local dynamics function, where each neuron evolves independently and collective computation emerges from interactions through the explicit graph topology. We instantiate TND as a discrete-time graph-coupled dynamical system and evaluate it as a case study on a behavior cloning task in single-player Pong. Compared with Vanilla RNN, Sparse RNN, LSTM, Closed-form continuous-time neural network (CfC), and Transformer baselines, TND achieves the best catch rate and a mean of 17.47 consecutive catches per round, more than three times that of the strongest baseline. These results suggest that shifting from layer-wise to neuron-wise dynamics provides an effective inductive bias for sequence modeling.

Modeling long-sequence medical time series data, such as electrocardiograms (ECG), poses significant challenges due to high sampling rates, multichannel signal complexity, inherent noise, and limited labeled data. While recent self-supervised learning (SSL) methods, based on various encoder architectures such as convolutional neural networks, have been proposed to learn representations from unlabeled data, they often fall short in capturing long-range dependencies and noise-invariant features. Structured state space models (S4) excel at long-sequence modeling, but existing S4 architectures fail to capture the unique characteristics of multichannel physiological waveforms. In this work, we propose SL-S4Wave, a self-supervised learning framework that combines contrastive learning with a tailored encoder built on structured state space models. The encoder incorporates multi-layer global convolution using multiscale subkernels, enabling the capture of both fine-grained local patterns and long-range temporal dependencies in noisy, high-resolution multichannel waveforms. Extensive experiments on real-world datasets demonstrate that SL-S4Wave (1) consistently outperforms state-of-the-art supervised and self-supervised baselines in a challenging arrhythmia detection task, (2) achieves high performance with significantly fewer labeled examples, showcasing strong label efficiency, and (3) maintains robust performance on long waveform segments, highlighting its capacity to model complex temporal dynamics in long sequences that most existing approaches fail to efficiently model, and (4) transfers effectively to unseen arrhythmia types, underscoring its robust cross-domain generalization. We additionally evaluate SL-S4Wave on multiple EEG tasks, achieving superior performance over strong baselines, demonstrating generalizability of our approach beyond cardiac waveforms.

Effective machine learning depends not only on how we model data, but also on what data we choose to collect. While large sequence models have revolutionized data modeling, the problem of automated data selection, or "intrinsic curiosity", remains a significant challenge. Classic approaches incentivize exploration by rewarding an agent based on its "learning progress", which measures how much a newly acquired observation improves a world model's predictive ability. However, evaluating these rewards traditionally requires expensive inner loops of gradient descent updates within each trajectory, rendering them computationally impractical at scale. In this work, we investigate whether the emergent in-context learning (ICL) capabilities of sequence models can eliminate this bottleneck by serving as immediate, update-free world models. Specifically, we evaluate whether an exploration policy can be trained to maximize learning progress, using solely the prediction errors and counterfactual context manipulations of an in-context learner. We first prove that in general Markov decision processes, this is in fact impossible in an unbiased way: the resulting intrinsic rewards either suffer from nuisance terms that bias their estimation of true learning progress, or they cannot be implemented using an in-context learner's prediction errors. Conversely, we prove a positive result for a broad subclass of non-temporal settings, encompassing active learning and Bayesian Experimental Design: here, ICL-derived rewards successfully bound and asymptotically converge to the true learning progress. We corroborate our theory with controlled experiments across continuous and symbolic environments, demonstrating that our ICL-driven framework successfully trains curious data-collection policies that explore optimally.

This paper proposes a constant time-delay trajectory tracking method for vehicle convoys operating without inter-vehicle communication, a common coordinate system, or global positioning. The method integrates a probabilistic sequence-to-sequence (Seq2Seq) neural network with an invariant extended Kalman filter (IEKF) to warm-start the prediction process, allowing accurate estimation of a leader vehicle's relative trajectory on the SE(2) manifold. A geometric model predictive controller is further incorporated to fully exploit the manifold-based trajectory predictions for improved control performance. The system can handle arbitrary nonlinear trajectories with varying speeds and motion profiles while reducing the need for expert-based domain knowledge for the design of trajectory following systems, even under long trajectory delays. The effectiveness of the method is validated through comparisons with a pure IEKF baseline, learning-based methods, and the ground-truth trajectory in kinematic simulations, as well as in experiments using real robotic vehicles.

Sequence modeling has become increasingly popular in recommendation and ranking algorithms, owing to its capacity to model users' historical behaviors and infer user intentions. Despite its theoretical simplicity, the practical deployment of a sequence model in production is non-trivial due to complexity of the sequence and sparse labels. For example, in Airbnb, guest sequences are often long, exploratory and complex, and we focus on booking labels, which are sparse. As such, we are often required to make various design decisions regarding data and modeling to strike a balance between effectiveness and scalability. This work delved into these production challenges and deployed JourneyFormer, a sequence modeling solution for search ranking at Airbnb. We detail crucial design considerations, covering aspects such as guest event selection, ID embeddings, model architecture, and label attribution. Additionally, we describe several tailored strategies to accelerate model training and inference. JourneyFormer has been successfully deployed within Airbnb's production, where its effectiveness and impact have been evidenced not only by improved offline ranking metrics but also by significant gains in key business metrics through online A/B testing across 2 production surfaces.

Intent-based recommender systems have gained significant attention for improving accuracy and interpretability by modeling the underlying motivations behind user behaviors. Most existing models derive intents directly from user sequences via clustering or prototype learning. However, they are sensitive to sequence quality, require presetting the number of intents, and lack explicit semantic grounding. These issues lead to an incomplete and coarse intent set and limit the effectiveness of recommendation. In this paper, we propose the Sparse Autoencoder for intent-based recommendation (SAERec), a novel recommender that automatically constructs a fine-grained and interpretable intent space from a textual corpus to guide recommendation. Rather than treating texts as side signals, SAERec leverages them as high information density evidence for intent construction. Specifically, we first extract a comprehensive set of fine-grained interpretable intents from the latent space of large language models (LLMs) by using a sparse autoencoder (SAE) to disentangle and interpret text embeddings, which isolates intent-related semantics from textual noise. Then, for each user, we retrieve relevant intents from this set as priors to guide recommendation. It contains personal intents matching a user's current interests and public intents capturing general item patterns shared across users (e.g., quality, price). Finally, to integrate retrieved intents into sequence modeling, we propose a multi-branch attention mechanism that captures temporal dependencies and injects both personal and public intent signals, followed by an adaptive fusion layer to construct the final user representation for recommendation. Extensive experiments on public datasets demonstrate the superiority of SAERec, consistently outperforming state-of-the-art baselines while providing human-understandable explanations.

Structurally constrained event sequence generation remains challenging because generated paths must preserve transition feasibility, temporal order, termination, and attribute consistency. In predictive process monitoring (PPM), this challenge appears as full event sequence generation, whereas existing work mainly addresses component tasks such as next activity, remaining time, outcome, and attribute prediction. This paper proposes the Graph Grounded Cross Attention Transformer Neural Network (GGATN) for this unified PPM task. GGATN uses a global process graph as structured activity memory, contextualizes sequence positions through Transformer self attention, and injects process topology through graph grounded cross attention. Unlike autoregressive decoding, GGATN generates activities, timestamps, length, and event level and sequence level attributes in a single pass, followed by Viterbi style graph constrained decoding for feasible paths and explicit termination. Experiments on six benchmark event logs show more reliable generation quality than local instruction prompted LLM baselines. GGATN achieves strong performance on sequence similarity, Damerau Levenshtein similarity, bigram based control flow similarity, and duration distribution, while maintaining zero hallucinated activities and zero sequence level attribute inconsistency. Ablation analyses confirm the global graph encoder as a stable structural prior. Interpretability analyses show how graph structure, sequence context, feedback refinement, and constrained decoding shape generation.

Autoregressive video diffusion models have emerged as a promising approach for long video generation, achieving strong performance in streaming settings. However, existing methods are restricted to forward temporal generation, whereas practical video creation often requires flexible generation order, e.g., conditioning on future context to extend backward, or on both past and future context for inbetween generation. We bridge this gap by training an autoregressive model that supports generation in arbitrary temporal directions. A key technical challenge arises from the Causal 3D VAE widely used in video diffusion models, which encodes latents strictly conditioned on past context. While suited for forward generation, this causal structure causes inter-block discontinuities when generation proceeds backward. To address this, we introduce blockwise anchor latents, a set of auxiliary latents that restore the missing past context at block boundaries during backward generation. Built on this design, we propose UniTemp, a bidirectional distillation framework that trains a single autoregressive student model for any-direction video generation. At inference time, UniTemp conditions on arbitrary past and/or future frames, improving controllability for both bidirectional and inbetween generation. Experiments show that UniTemp maintains competitive performance on short and long video generation compared to forward-only methods, while enabling diverse workflows such as bidirectional video extension, inbetween generation, looping video generation, scene transition, and visual story generation. Project website: https://lzhangbj.github.io/projects/unitemp/

Existing information extraction (IE) tasks increasingly adopt in-context learning (ICL) with large language models. However, current approaches either show inconsistent performance across model scales or lack systematic optimization and generalizability. Building on this, we propose BCL (Bayesian In-Context Learning Framework for Information Extraction), the first optimization framework that uses particle filtering with Bayesian updates to systematically refine label representations across IE tasks. Through four steps initialization, observation, weight update, and resampling, BCL generalizes to both sequence labeling and relation classification paradigms. Extensive experiments demonstrate substantial and consistent improvements over existing approaches.

In speech processing, most state-of-the-art sequence prediction models rely on auto-regressive (AR) strategies to generate output sequences based on the raw predictions of the model. Despite their crucial role in the inference process, a comprehensive overview of AR strategies as a unified field is lacking, due largely to implicit and multiple definitions of next-token decoding. This context complicates the choice, comparison, and evaluation of strategies, while creating inconsistencies in the characterization of approaches as auto-regressive or not. We begin by setting explicit inclusion criteria for the field of AR search in speech processing, and derive a generalized theoretical framework to categorize and report on search strategies for neural models. We show the capabilities of this formalism in simplifying the design of benchmarks centered around the decoding process, allowing for ablation studies that are focused on search strategies.

Kashmiri, an Indo-Aryan language written in a modified Perso-Arabic script, frequently omits diacritic marks in digital text, creating ambiguity and challenging downstream NLP applications. We present Koshur Diacritizer, a ByT5-small byte-level sequence-to-sequence model for restoring diacritics in Kashmiri text. To support this task, we release a publicly available dataset of 23.7k aligned undiacritized diacritized Kashmiri sentence pairs. The proposed framework combines script-aware normalization, alignment validation, and skeleton-preserving inference to ensure reliable restoration while maintaining the original base-letter sequence. Experimental results on a held-out test set achieve a DERm of 0.2012 and a WER of 0.2159. Additionally, evaluation by a native Kashmiri linguistic expert yields a mean accuracy of 77.5%. The dataset, model, and source code are publicly released to provide a reproducible baseline for Kashmiri diacritic restoration and future low-resource language research.

Fine-tuning Transformer-based foundation models has become the dominant strategy for domain adaptation in audio and speech processing. To reduce the computational and memory costs of this process, parameter-efficient transfer learning (PETL) methods have been widely explored. Meanwhile, Mamba, a recent state-space model, has emerged as a promising alternative to Transformers for sequence modeling. In this work, we present MambAdapter, a parameter-efficient transfer learning approach that integrates Mamba into low-rank bottleneck adapters. Our design combines parameter sharing across adapters with the injection of a lightweight Mamba module, enabling more effective modeling of audio features. We demonstrate that MambAdapter matches or outperforms strong PETL baselines on four audio classification tasks and five speech recognition languages, even when operating under reduced parameter budgets.

The YB Mixer is a sequence token mixing layer derived from free fermion and generalized Yang Baxter structures. It applies a core principle from integrable systems where a local algebraic constraint guarantees global computational stability. By using the Ising exchange algebra the mixer creates a free fermionic structure that acts as an exactly norm preserving orthogonal map. This algebra also produces commuting transfer matrices which allow inference to be order free and adaptable to any variable budget. To ensure the model can generalize to longer sequence lengths it uses a spectral circulant generator. This generator maintains the crucial orthogonal and commuting properties of the system. The result is a highly stable and mathematically grounded architecture for sequence processing.

Spiking Neural Networks (SNNs) are well-regarded for their biological plausibility and energy efficiency in processing sequential data. However, dominant SNN architectures typically rely on first-order Ordinary Differential Equations (ODEs) to govern neuronal state transitions. This first-order assumption imposes a "memoryless" bottleneck, limiting the model's capacity to capture the complex, long-range dependencies inherent in long-sequence tasks. In this work, we propose LongSpike, a novel SNN framework that integrates fractional-order State-Space Modeling, or f-SSM, from control theory into the spiking domain. By extending traditional integer-order SSMs to the fractional-calculus regime, LongSpike enables the hierarchical integration of neuronal dynamics with long-memory kernels. To mitigate the computational overhead and parallelization challenges typically associated with fractional operators, we leverage a state-space formulation that supports efficient, parallel training. Empirical evaluations on challenging benchmarks, including Long Range Arena (LRA), large-scale WikiText-103, and Speech Commands, demonstrate that LongSpike outperforms state-of-the-art SNNs in accuracy while preserving sparse synaptic computation. The code is available at https://github.com/xinruihe389-commits/LongSpike.

Protein language models are trained on highly imbalanced datasets, raising the question of how they represent underrepresented biological sequences. Using viral proteins as a case study across ESM model families, we identify a dominant nativeness axis in embedding space, aligned with masked reconstruction perplexity, that orders sequences from well-modeled cellular proteins through viral proteins to shuffled and random sequences. Scaling contracts this axis unevenly across viral families. Despite this, protein language model embeddings retain viral-specific signal: viral proteins remain linearly separable beyond zero-shot perplexity and shallow sequence features. Together, these results suggest that pLM representations are structured by a general notion of nativeness while preserving information specific to distinct biological groups.

Transformers dominate modern sequence modeling, but their quadratic attention incurs substantial computational cost. Subquadratic architectures offer a scalable alternative. However, it remains unclear which designs yield the most effective sequence models. We compare three leading approaches: xLSTM, Mamba-2, and Gated DeltaNet. We evaluate these models on tasks with complex dependencies: (1) code-model pre-training, (2) distillation of code models from large language models, and (3) pre-training of time-series foundation models. Across these settings, xLSTM delivers the strongest overall performance. To explain xLSTM's advantage, we present a unified formulation and analyze the underlying architectural mechanisms, focusing on state tracking and memory dynamics. Our results show that xLSTM enables more flexible and stable memory correction via its gating scheme. We corroborate these findings on controlled synthetic length-generalization tasks. Overall, our findings indicate that xLSTM's gains on complex tasks stem from robust state tracking and accumulation.

Remaining Useful Life (RUL) prediction is essential for industrial predictive maintenance, yet many learning-based approaches rely on extensive feature engineering or large labeled datasets to train task-specific sequence models. In this work, we introduce a lightweight learning approach, in which we leverage a frozen pretrained time-series foundation model (TSFM) and combine it with a small regression head for RUL estimation from multivariate sensor streams. More specifically, we use Chronos-2 as a frozen backbone to extract context window features and train a lightweight regression neural network for RUL prediction. Experiments on real-world industrial sensor data from two device types show that Chronos-2 features consistently improve over recurrent, convolutional, Transformer-based, and gradient-boosting baselines under the same preprocessing and evaluation protocol. We further analyze the impact of context length and find that performance improves significantly with longer histories, indicating that TSFM representation offer a practical and data-efficient alternative for RUL estimation in industrial settings.

Molecular communication (MC) suffers from severe diffusion memory because molecules released for one symbol may arrive during later symbols. Neural sequence detectors, especially sliding bidirectional recurrent neural networks (SBRNNs), can substantially outperform threshold detectors in such channels. This raises a central question for MC channel coding: does a code whose advantage was established under threshold detection retain it when both coded and uncoded transmission are evaluated with neural detection? This letter answers this question for run-length-limited ISI-mitigation (RLIM) codes, a class of constrained codes previously shown to provide large BER gains in MC. Across the tested operating points, the best RLIM-SBRNN receiver beats the best uncoded receiver, chosen between threshold and SBRNN detection, in $46$ of $59$ cases, with a mean gain of $10.36\times$ over those wins. We also propose an RLIM-tailored training mask for compact SBRNN detectors, improving the unmasked RLIM-SBRNN in $227$ of $236$ comparisons with $3.267\times$ mean gain when masking is beneficial. Finally, the compact masked RLIM-SBRNN is competitive with channel-state-aware MLSE despite using no channel knowledge.

Large language models (LLMs) have demonstrated strong reasoning and instruction-following capabilities, making them potentially powerful tools for time-series analysis. However, time series lie outside their native textual modality, raising a fundamental question: how should time series be represented so that LLMs can reason about them effectively? Existing work typically serializes raw numerical sequences or fine-tunes pre-trained LLMs on time-series data. These approaches place the burden of extracting temporal structure directly on the LLM, creating a modality mismatch that often degrades performance on long sequences and introduces substantial computational overhead. In this work, we introduce Time-Series-to-Structured-Program representation (T2SP), a deterministic, training-free method that represents a time series as a structured symbolic program. T2SP decomposes time series into trends, periods, and salient events, expressing them in a program-friendly format aligned with the textual and code-like modalities on which LLMs are natively trained. By shifting temporal-structure extraction from the model to the representation itself, T2SP enables off-the-shelf LLMs to leverage their existing reasoning capabilities for time-series understanding. We evaluate T2SP on three reasoning tasks -- editing, captioning, and question answering -- where it consistently improves performance, reduces reasoning time, and lowers failure rates compared with raw-string representations. Our results demonstrate that T2SP provides an effective interface between time series and LLMs.

Attention mechanisms are central to modern sequence models, yet standard attention computes relevance primarily through individual query--key similarities. Although softmax normalization introduces competition among positions, a standard attention layer does not explicitly parameterize learnable interactions between attention decisions. This limits its ability to directly model cooperative or antagonistic co-attention structure within the attention mechanism itself. We propose Boltzmann attention, an energy-based generalization in which attention patterns are governed by an interacting Ising model. The method augments the usual data-dependent local fields with learnable pairwise couplings, allowing the model to represent inter-position correlations beyond those captured by softmax or sigmoid attention. Experiments on character-level language modeling and synthetic bracket matching show that Boltzmann attention consistently improves over standard softmax attention within a standard Transformer architecture, with the advantage becoming more pronounced as sequence length increases. A four-way ablation confirms that the improvement arises from the learnable pairwise couplings. These results suggest that explicit inter-position interactions provide a principled enhancement for attention-based sequence modeling. Moreover, the Ising formulation opens a natural path toward quantum-computing-based sampling strategies: we demonstrate that diabatic quantum annealing provides a practical training method while maintaining competitive performance with exact Boltzmann computation.

Despite its importance to applications in protein design, predicting protein properties like binding affinity and thermostability from sparse experimental data remains a significant challenge. Accordingly, we introduce a class of sequence kernels that exploit evolutionary substitution matrices as well as local linearity and demonstrate that the resulting Gaussian processes provide data-efficient models of protein property landscapes, frequently outperforming alternatives that rely on foundation model embeddings. Furthermore--by learning what are in effect structure-aware substitution matrices--we show that our kernels can readily incorporate structural information from foundation models. We demonstrate that these structure-conditioned kernels are well suited to multi-task learning across multiple protein property landscapes and can decisively outperform local supervised learning methods.

Sequential recommendation aims to predict users' next interaction with items by analyzing their historical behavior. However, the limited quality of item representations remains a critical bottleneck. While pre-trained large language models (LLMs) can provide rich semantic representations, existing approaches only rely on static encoding of fixed attributes, overlooking the crucial role of target audiences in defining item identity. Moreover, the semantic space struggles to reflect actual user behavior, resulting in a significant gap between semantic representations and behavioral patterns. To address these limitations, we propose GenAIR, a general framework that empowers sequential recommendation with Generative Archetype-grounded Item Representations. Specifically, we first leverage an LLM to analyze item metadata and infer textual description of the Archetype, which represents the conceptual profile of the item's ideal target audience. We then extract the corresponding embeddings in a single forward pass. Further, to ground these generative archetypes in real-world behavior, we introduce a behavioral calibration objective, which explicitly incorporates behavioral signals from actual interactions. This objective adjusts the structure of the embedding space to reflect empirical patterns. GenAIR enables seamless integration with most existing models while maintaining high efficiency. Comprehensive experiments conducted on three real-world datasets demonstrate that GenAIR significantly improves the performance of various sequential recommendation models and consistently outperforms state-of-the-art baseline approaches. Implementation codes are available at https://github.com/AI-Santiago/GenAIR.

Acoustic metamaterial (AMM) inverse design is particularly challenging for broadband target responses due to acoustic dispersion: a structure that matches the desired response at one frequency may deviate at others, and modifying geometry to improve one sub-band often perturbs neighboring sub-bands. Yet existing broadband inverse-design approaches are either constrained by predefined templates, or rely on image representations that fail to preserve the geometric precision and structural connectivity required by acoustic structures. We present MetaSeq, a physics-guided, sequence-based generative framework for acoustic metamaterial inverse design. At its core, MetaSeq introduces a language that represents each AMM as a structured sequence, rather than as a pixel grid or fixed template. This representation preserves precise geometry, explicitly encodes connectivity, and casts inverse design as a sequence-to-sequence task from target response to structure sequence. MetaSeq further constructs a balanced, high-fidelity dataset with efficient calibration and complexity-based sampling. To address the one-to-many nature of inverse design, MetaSeq combines supervised pretraining with reinforcement learning fine-tuning guided by a physics-based solver and validity checker. Extensive evaluations against COMSOL and five baselines show that MetaSeq reduces response error by 45% over the best baseline.

Adaptive beamforming is a cornerstone of array signal processing, yet its performance often collapses in the face of complex, rapidly changing interference. When interferers appear or move unpredictably, conventional estimators encounter a fundamental memory trade-off: short windows enable rapid tracking but suffer from high estimation variance, while long windows provide stable rejection but fail to adapt to shifts. This challenge is resolved by introducing the Universal Switching Beamformer (USB), which integrates competitive sequential prediction into the beamforming architecture. By employing a linear transition diagram, the USB implicitly maintains an exponentially large family of candidate covariance histories and dynamically re-weights them based on their cumulative output power. This mechanism allows the beamformer to automatically vary its effective memory length without explicit change detection or heuristic parameter tuning. A theoretical upper bound is proven on the regret relative to an omniscient oracle that selects the best piecewise-stationary covariance model in hindsight. Extensive simulations and experiments on the SwellEx-96 dataset demonstrate that the USB achieves the agility of short-window estimators and the precision of long-term integration, providing a principled solution for tracking highly non-stationary scenes.

MOLOT (Malicious Operational Logic Observation Transformer) is a static malicious-code detection system designed for SAST setup where package metadata, maintainer history, and dynamic execution traces may be unavailable or unreliable. The system represents source code as behavior sequences derived from static call graphs, includes an explanation stage that ranks suspicious behavior activities and maps them back to source-code locations. The approach is evaluated on Python and JavaScript packages from PyPI and npm, compared with opensource detection tools, and validated under product constraints including runtime, memory use, and false-positive rates observed in a real moderation workflow. We also release Open Malicious-Code Bench, a public benchmark for reproducible evaluation of malicious-package detection methods. The results show that static behavior-sequence modeling can provide accurate, explainable, and deployable malicious-code detection for modern DevSecOps workflows.

Single-step retrosynthesis needs both accurate first-ranked suggestions and candidate lists that are rich enough for downstream selection. We study this as a proposal-selection decomposition. Our system, RETROSPECT, combines a single Transformer proposal model, which we call the ChemAlign Transformer, with a LambdaMART reranker over structural, reaction-template, upstream-score, and optional DFT-derived descriptors. The generator is trained with hybrid root-aligned and random SMILES augmentation, Pre-LayerNorm, tied embeddings, exponential moving average weights, and a differentiable atom-balance auxiliary loss. On the full USPTO-50K test set of 5,007 reactions, the generator reaches 55.00% top-1 and 86.18% top-10 exact-match accuracy with 99.86% top-1 validity. On the merged candidate-pool benchmark used for reranking, which contains 5,007 test products and about 111 candidates per product, a LambdaMART model trained on the structural feature set reaches 59.4% top-1 with 0.7171 mean reciprocal rank. Feature ablations show that upstream proposal score and template-frequency statistics provide most of the reranking signal, while DFT and reaction-center DFT features provide smaller and less consistent gains. These results support a modular view of retrosynthesis: stronger single-model proposal and learned candidate selection are complementary, and the proposal model can serve as a drop-in component for ensemble systems such as RetroChimera (Maziarz et al., 2024)

Customer churn prediction is a central task in customer analytics, particularly in non-contractual, pay-per-use service environments where disengagement is not explicitly observed and must be inferred from behavioral inactivity. Existing churn prediction approaches often rely on simplified temporal assumptions or single-point representations of customer behavior, which limit their ability to support continuous risk assessment, interpretability, and realistic deployment over time. This study proposes a temporally explicit churn prediction framework that models customer behavior using rolling behavioral windows, enabling repeated and instance-level churn risk estimation as customer activity evolves. Customer behavior is summarized within a fixed 30-day observation window, followed by a 30-day future churn evaluation window, ensuring a clear temporal separation between behavioral evidence and churn outcomes. The framework integrates feature-based and sequence-based learning approaches within a unified temporal design. The proposed approach is evaluated on a large-scale, real-world dataset from a non-contractual service platform. Empirical results demonstrate strong and stable predictive performance, with accuracy reaching 87.6% and ROC-AUC of 0.94 for the feature-based model, while the sequence-based model achieves recall as high as 96.1% by capturing temporal disengagement patterns. Evaluation on future unseen data confirms meaningful robustness under temporal shift, with accuracy remaining above 83% and ROC-AUC exceeding 0.91 without model retraining. Overall, the findings highlight that carefully designed temporal framing, rather than model complexity alone, is critical for achieving robust, interpretable, and deployment-ready churn prediction. The study provides a practical foundation for churn-oriented decision support in dynamic service environments.

Neuroevolution is a representative neural architecture search paradigm that evolves both network topology and weights through evolutionary algorithms. In this paper, we propose Seq103, a unified NEAT-style neuroevolution framework for compact sequence architecture discovery. Seq103 consists of a shared evolutionary backbone and an optional recurrent extension. The shared backbone includes an elementary node-and-connection representation, per-class RMSE-based evaluation, mutation-based evolution with class-wise recombination, and elitism. The optional hidden-state mechanism extends the search space with hidden-state nodes and hidden connections, enabling temporal memory when step-wise recurrent inference is required. With this design, Seq103 applies the same core search pipeline to both step-wise recurrent and sample-wise feedforward sequence classification. In recurrent tasks, the hidden-state extension is enabled to provide temporal memory; in feedforward tasks, it is disabled while the shared evolutionary backbone remains unchanged. We evaluate Seq103 on 8 text classification datasets and the full UCRArchive2018 benchmark with 128 univariate time-series datasets. On step-wise tasks, Seq103 retains 86.96% of the best-baseline accuracy on average while using 34.6x to 3218.0x fewer parameters. On sample-wise tasks over the full UCRArchive2018 benchmark, Seq103 retains 81.95% of the best-baseline accuracy on average while using 11.8x to 160,601.0x fewer parameters.

We present in this paper a framework for the identification of control-affine reduced-order models (ROMs). The proposed method utilizes autoencoders (AEs) to transform the high-dimensional states, and potentially the high-dimensional inputs, into reduced latent ones suitable for control-affine state-space dynamics. This is achieved by simultaneous training of the AE and the state-space model. In addition, we extend the discrete ROM formulation to a sequence-based model, which processes state and input histories to improve prediction accuracy while preserving the control-affine structure. We motivate our framework by applying feedback linearization to the derived models, and we present guidelines for its efficient use. The proposed framework is assessed on two numerical examples and its performance is compared to a baseline model, where the AE identifies a latent space with linear state-space dynamics. The assessment involves evaluating the prediction accuracy of the ROM on test data and its effectiveness in controlling the system to a desired state or trajectory.

Minimum Description Length (MDL) formalizes the principle of Occam's razor by optimizing the total description length: $L(\mathrm{model})+L(\mathrm{data} \ | \ \mathrm{model})$. For sequential prediction, the MDL method repeatedly selects a model with a minimum objective score of the observed prefix for the next step prediction. Classical MDL prediction theory shows that exact optimization of the MDL objective indeed provides a strong compression guarantee that supports reliable prediction. However, practical machine learning usually can only find models by approximately optimizing the objective function. To bridge this gap, this paper addresses the following fundamental question: Under what forms of approximation and regularization does approximate MDL still guarantee reliable sequential prediction? This work offers a principled characterization. We prove that for any approximation with additive slack $C$ of the more general form of the balanced MDL objective: $λ\cdot L(\mathrm{model})+L(\mathrm{data} \ | \ \mathrm{model})$, the cumulative expected squared prediction error is finite for all $λ\ge1$. The case $λ>1$ is proved by an affinity-telescoping argument, while the boundary case $λ=1$ is proved by a likelihood-ratio stopping argument based on exact static MDL bounds. Our results establish that classical MDL regularization remains robust to any fixed additive optimization error. Furthermore, we establish that our characterization of the approximate MDL framework is sharp: When $0<λ<1$, overfits can happen to incur infinite cumulative expected error in the universal class of estimable measures, and hence a strong form of model-complexity regularization is necessary. In addition, model selection may fail in every regularized regime $λ>0$, under multiplicative approximation, and thus, additive approximation is both sufficient and essential.

Sequential recommendation systems are widely adopted but often deployed as black-box APIs, which has driven recent interest in model extraction to replicate their capabilities locally. However, the long-tail distribution induces severe signal heterogeneity: dense head sequences trigger the solidification of teacher preference, biasing extraction toward local patterns, while sparse tail sequences yield flat, noisy predictions. Existing one-size-fits-all extraction overlooks this disparity, resulting in noise overfitting and suboptimal knowledge transfer. We propose BAHSD, a black-box adaptive distillation framework that handles signal heterogeneity via a multi-scale consistency probing mechanism to implicitly quantify signal reliability. Based on this, an adaptive hierarchical objective is designed: dynamic-temperature KL divergence mitigates preference solidification for high-confidence signals, while ranking consistency and InfoNCE contrastive learning provide noise-robust enhancement for low-confidence signals. BAHSD consistently outperforms baselines, achieving up to 4.98% gain over the teacher and 80%+ improvement on tail users, offering a plug-and-play solution for high-fidelity black-box recommendation extraction.

Is the uniform-state diffusion framework a more powerful paradigm for discrete diffusion? Recent studies indicate that this may be the case. In combination with predictor-corrector samplers, uniform-state diffusion models (USDMs) produce samples of higher-quality than masked diffusion models (MDMs), and USDMs equal or outperform MDMs in downstream tasks, even though they exhibit greater perplexity. Two issues remain unresolved. First, existing work compares uniform and masked diffusion with un-informed correctors that re-inject noise at random positions, rather than targeting tokens most likely to be wrong. Second, prior work compares full-sequence diffusion models, so we do not know whether the same conclusion holds when tokens are generated block by block. To address these issues, we introduce BlockGen, a blockwise sequence model that we instantiate with both masked and uniform diffusion. BlockGen trains on a mixture of block sizes and its likelihood interpolates between AR and pure diffusion more finely than models with a fixed block size. BlockGen enables AR-informed predictor-corrector sampling (ARPC), which combines AR and diffusion predictions to re-generate unlikely tokens without an auxiliary verifier. Under ancestral sampling, uniform outperforms masked in the block-by-block setting, especially in the few-step regime. Under ARPC, the gap closes and reverses at high NFE. With block size $16$ on GSM8K, MDMs reach slightly higher accuracy than USDMs, and we observe a similar trend in Generative Perplexity on OpenWebText. Find our code at https://github.com/jdeschena/blockgen.

Non-monotonic sequence generation methods, such as masked diffusion models, provide a flexible alternative to left-to-right autoregressive modeling by allowing tokens to be generated in non-fixed and prescribed orders. Despite their practical advantages, most existing non-monotonic models are order-agnostic and rely on a fixed-length grid, limiting their ability to support variable-length generation and adaptive insertion order. In this work, we introduce a probabilistic framework for learning insertion order in variable-length insertion models. We formalize a bijective correspondence between insertion trajectories and permutations, which enables an exact reparameterization of the data likelihood as a sum over permutations. Building on this result, we propose the Insertion Process (IP), a stochastic generative model that jointly learns where to insert, what to insert, and when to terminate, trained via permutation-based variational inference. Unlike prior fixed-canvas approaches, IP natively supports variable-length generation and learns data-driven preferences over insertion orders. Experiments on goal-conditioned planning and molecular string generation demonstrate that learning insertion order improves both modeling quality and generalization in domains without a canonical left-to-right structure.

Modern large-scale deep learning exhibits two striking empirical phenomena: behavioural scaling laws (predictable performance gains with increasing scale) and emergent mechanisms (structured internal representations and circuits in deep neural networks). We hypothesise that these two phenomena are connected: that predictable changes in behaviour are the result of predictable changes in internal computational structure. In this paper, we report preliminary evidence of such a connection. We find a correlation between scaling patterns in performance and representations in small transformers trained to predict the outputs of a hidden Markov model, for which residual activations are known to linearly encode a belief distribution over latent states in a probability simplex.

Probes are routinely paired with an intervention: ablate the direction the probe found, run the model, and read the change in task accuracy, taking a large drop as evidence that the computation depends on what the probe read and a near-zero drop as evidence that it does not. Either inference requires that the ablation have removed the target from the layer. We find that the ablation does not remove what it targets. A probe refitted on the ablated activations recovers its original accuracy in every cell we test, and keeps recovering when the probe's entire row space is deleted rather than a single axis, because the quantity survives in the orthogonal complement. Because a refitted probe recovers, neither a large task drop nor a near-zero one establishes whether the model needed the target, and one probe fit detects this. Replacing the ablation with iterative nullspace projection, scored against random subspaces of matched dimension, reverses the conclusion: representations that looked causally inert carry most of the task. The correction also separates where a variable is most readable from where deleting it does most damage, and those are not the same layer in any pretrained model we study. The erasure is defined by a linear probe family, so removing a nonlinearly encoded quantity remains open.

Learning long-range non-stationary temporal patterns remains a core challenge for modern sequence models, particularly in strict streaming settings. In these settings, data arrive sequentially and must be processed in a single pass without simultaneously revisiting past observations. Standard architectures, including recurrent neural networks and transformers, are constrained by either truncated backpropagation through time horizon or explicit input window length for long range credit assignment. To address these limitations, we propose SHARP (Sleep-based Hierarchical Accelerated Replay), a framework that decomposes temporal learning into two complementary components: a memory module that accumulates a structured history of past inputs, and a pattern-recognition module that operates over this memory. This separation enables resource- and compute-efficient adaptation to non-stationary dynamics by eliminating the need for backpropagation through time across many steps for long-range credit assignment. Inspired by the accelerated replay observed in rodents during slow-wave sleep, SHARP incorporates offline (sleep) phases in which temporally structured memory traces are replayed in an accelerated form and integrated into higher-level memory representations, improving long-range context retention. Through controlled simulations and ablation studies, we characterize the key properties of the proposed framework. In benchmark datasets such as text8 and PG-19, we demonstrate that SHARP improves over recurrent baselines by retaining next-token predictive performance on previously seen data while continuing to learn from the current stream and generalizing to future unseen data. These gains are enabled by its hierarchical structure, which yields an exponentially increasing effective temporal context with only linear-time computational cost.

Passenger count data from public transit systems reveals urban mobility patterns and is essential for planning, operation, and optimisation. However, non-linear spatiotemporal interdependencies across stops and lines make modelling and prediction challenging. Existing approaches often rely on fixed temporal, spatial, or stop-level formulations, limiting their ability to capture within-trip evolution and network context. This study proposes SMT-GraphFormer, a spatiotemporal multi-task graph transformer that frames trip-level transit prediction as sequence-to-sequence modelling. Given a line's stop sequence and trip-level context, the model predicts successive boarding and alighting counts, with delay and dwell time treated as encoder-side surrogate tasks. Key components include graph embeddings for multi-relational stop similarity, a context encoder for weather and temporal information, and a multi-gate mixture-of-experts module that produces task-specific decoder representations for boarding and alighting predictions. Evaluation on public bus transit data from Trondheim, Norway, shows that SMT-GraphFormer outperforms stop-level tabular benchmarks, with ablation studies examining each component's contribution. The sequential formulation yields substantial gains on alighting prediction ($+$0.24 in $R^2$) and consistent improvements on boarding, delay, and dwell, confirming the value of explicit trip-level sequential bias and inter-target dependencies. These findings demonstrate the potential of transformer-based sequence modelling for capturing complex spatiotemporal dynamics in public transit and underscore the value of architectures tailored to transit data rather than off-the-shelf tabular models. The proposed framework provides a horizon-agnostic basis for scenario analysis in digital twin environments, supporting informed decision-making by planners and transit operators.

A central challenge in visual intelligence is learning the physical structure of scenes from raw videos: how regions form objects and the laws that govern their interactions. Solving these tasks requires world models capable of inferring distributional states of the world from partial observations - capabilities that current architectures do not provide. We introduce a new class of probabilistic world models that support estimation of the probability of any visual variable, such as appearance and dynamics, conditioned on any other variables. Here, we identify that these models can be trained efficiently with autoregressive sequence modeling, yielding world models from which rich object understanding emerges. First, we demonstrate that our model captures the physical laws governing how objects move by generating multiple plausible future states of the world through sequential inference. Then, by analyzing motion correlations across these futures, we extract objects and articulated object subparts. Having discovered these objects, we show that our world model can manipulate them in 3D. Finally, we demonstrate how physical relationships between objects can be computed from the world model, enabling applications such as Visual Jenga.