Runtime Uncertainty Monitoring for LLM-Based Multi-Agent Systems Using Bayesian Networks

LLM-based multi-agent systems (MAS) solve complex tasks through communication among role-specialized agents. However, inter-agent dependencies introduce reliability risks beyond isolated agent failures. For instance, errors in intermediate messages could be inherited and amplified by downstream agents. Existing uncertainty quantification (UQ) methods mainly target isolated responses or single-agent reasoning, and therefore fail to capture uncertainty propagation in MAS. To this end, we propose PropUQ-MAS, an error propagation-aware UQ framework that represents MAS execution as a communication-structured graph and estimates each step's reliability by combining local uncertainty with uncertainty inherited from upstream messages. Extensive experiments demonstrate that PropUQ-MAS consistently improves UQ in MAS, with average relative gains of +6.10% in AUROC and +47.58% in PRR.

Uncertainty in large language model (LLM)-based systems is often studied at the level of a single model output, yet deployed LLM applications are compound systems in which uncertainty is transformed and reused across model internals, workflow stages, component boundaries, persistent state, and human or organisational processes. Without principled treatment of how uncertainty is carried and reused across these boundaries, early errors can propagate and compound in ways that are difficult to detect and govern. This paper develops a systems-level account of uncertainty propagation. It introduces a conceptual framing for characterising propagated uncertainty signals, presents a structured taxonomy spanning intra-model (P1), system-level (P2), and socio-technical (P3) propagation mechanisms, synthesises cross-cutting engineering insights, and identifies five open research challenges.

Uncertainty quantification (UQ) methods for language models are typically evaluated on single-turn outputs, where uncertainty is attached to one generated answer. For LLM agents, however, the unit of observation is an interactive trajectory, where the model can ask clarifying questions, call tools, update state, and make intermediate decisions whose errors propagate to the final outcome. We study whether three common families of single-turn UQ methods transfer to this setting. Across five LLMs and four multi-turn tool-use datasets from BFCL-v4 and $τ^2$-bench, we evaluate white-box scorers based on action-token probabilities, black-box consistency scorers based on resampled trajectories, and reflexive scorers based on model self-assessment of the trajectory. We find that transfer is often useful but uneven. Token-probability scores are highly sensitive to the choice of aggregator used across turns, reflexive scores provide the strongest low-cost baseline in most evaluated settings, and black-box self-consistency is often the strongest UQ family, with trajectory-equivalence and action-set consistency typically ranking highest among its variants. These results suggest that UQ methods developed for single generations should be revalidated at the trajectory level, with careful attention to the consistency measurement, aggregator choice, and computational budget.