Reverse Engineering

As language-model compute continues to scale, high-quality training data is becoming an increasingly important bottleneck. Conventional next-token prediction supervises what follows a context but leaves the intermediate reasoning behind that continuation implicit. We introduce \textbf{REER-PT}, a scalable framework that extends Reverse-Engineered Reasoning (REER) to raw pre-training data. REER-PT identifies continuations that are difficult to predict but can still be inferred from the preceding context, and inserts concise reasoning annotations that reconstruct the missing connection between context and continuation. Candidate annotations are generated and refined offline, with perplexity serving as the optimization signal. Constraints on length and target leakage filter out unhelpful or trivial annotations. This sparse transformation preserves the source text and remains compatible with standard next-token prediction, avoiding online reasoning rollouts during pre-training. We apply REER-PT to transform a source pre-training corpus into an augmented one. Across augmented-data, original-token, and selected-continuation comparisons, perplexity reductions range from 0.42 to 7.29, and only about 0.05% of annotation 13-grams appear verbatim in the source text. We then train two 680M-parameter models with the same architecture and training configuration on the source and augmented corpora, respectively. The augmented-data model gains up to 2.07 percentage points on several knowledge and reasoning benchmarks. Together, the perplexity analysis indicates improved continuation predictability, while the controlled pre-training experiments suggest that this augmentation can improve model performance without changing the standard pre-training objective.

AI agents are rapidly improving in cybersecurity capabilities when the source code is available for analysis, yet much of the software most consequential to cybersecurity, including malware, firmware, and proprietary applications, is available only as binaries. Analyzing such software requires reverse engineering(RE): recovering program semantics before the analysis can be meaningfully performed. However, evaluating agentic RE poses a fundamental challenge: benchmark instances must be unseen as source code in the LLMs' training data to prevent models from taking shortcuts by recognizing them rather than really analyzing them, while also matching the scale and anti-analysis protections of real software. Unfortunately, however, existing benchmarks do not jointly satisfy these requirements. To this end, we introduce SRE-Bench, the first realistic, contamination-free RE benchmark. Built entirely from scratch by RE experts with over 5,000 hours, SRE-Bench comprises 19 private, real-world-scale programs averaging 16.9K lines of code. We further developed 44 in-house anti-analysis primitives, yielding 262 binary instances and 1572 deterministically graded tasks. Our evaluation across five frontier LLMs (GPT-5.6-sol,Claude-Opus-5,GPT-5.5,Grok-4.5, and GLM-5.2) shows that RE remains largely unsolved: the strongest model, GPT-5.6-sol, scores 61.4% per instance, and fully solves only 31.5% of the instances. Our analysis further reveals that agents behave differently from human engineers, where agents are relatively insensitive to compiler optimization and static linking. Controlled ablations also confirm that both contamination control and realistic scale are essential. These results indicate that strong source-code security capabilities do not yet transfer to binary analysis, highlighting RE as an important frontier for agentic cybersecurity and SRE-Bench as a rigorous testbed to measure progress.

Human-Oriented Binary Reverse Engineering (HOBRE) aims to transform decompiled pseudocode into a more human-friendly representation, thereby reducing the cognitive burden of reverse analysis and improving efficiency. However, reliably evaluating HOBRE outputs remains a fundamental challenge: human evaluation is costly, time-consuming, and difficult to scale, while existing automated metrics either require executable test cases and runtime environments that are often unavailable for real-world binaries, or rely on high-quality source code references that are typically inaccessible and fail to capture semantically equivalent but lexically diverse outputs. Although LLM-as-a-Judge paradigm is naturally well-suited to HOBRE evaluation, its effectiveness remains underexplored. This paper presents the first systematic investigation of the LLM-as-a-Judge paradigm for HOBRE across three representative tasks: function name recovery, binary code summarization, and decompilation optimization. We introduce BinJudgeBench, the first expert-annotated, reference-free evaluation benchmark based on multi-dimensional human judgment, where LLM-as-a-Judge achieves an average correlation of 63.20% with human judgment, outperforming traditional automated metrics at 35.04%. By analyzing judge configurations across backbone LLMs, prompting strategies, and decoding temperatures, we find that no ``one-size-fits-all'' configuration exists, as the optimal setup varies across tasks and individual samples. To address this, we propose BinJudge, which employs a lightweight routing mechanism to adaptively select the optimal judge configuration for each task and sample. BinJudge improves correlation with human experts by 4.5%-24.7% and reduces API cost to 0.06$\times$-0.84$\times$ of that of static best configurations, providing a scalable, cost-effective, and high-fidelity automated evaluation scheme for HOBRE.

Binary function embedding models are trained to encode the semantics of binary code in such a way that they can be generalized to a variety of reverse engineering tasks, such as binary code search, vulnerability detection, or malware classification. While many models only take the function in question as contextual input, there have been successful attempts to improve function embeddings by leveraging information from the call graph. In this study, we dissect the implications of these embedding refinements. We conduct experiments using a range of graph-based models on the embeddings generated by two state-of-the-art binary function embedding models. Integrating inter-procedural context, we show that improvements on binary code similarity detection (BCSD) will not necessarily generalize to downstream tasks, neither of semantic nor of syntactic nature. More generally, we find that optimizing for semantic similarity tasks correlates with worse performance on syntactic tasks. By conducting an explanatory analysis on the dataset, we find that the call graph-based enhancements significantly enhance the robustness of embeddings, particularly in scenarios where the initial models struggle. Furthermore, we observe that the added context is more beneficial for namespace-related functions than for those focused on individual logic, confirming that the call graph can be leveraged most effectively in context-dependent scenarios.

Computer-Aided Design (CAD) underpins modern engineering, yet converting existing shapes into editable models still demands substantial expert effort. Most AI systems emit the entire CAD program in a single pass, never inspecting the intermediate geometry. In contrast, human engineers build a part feature by feature, checking after each operation what remains to be modeled. We introduce CADENA (Spanish for "chain"), a model that reconstructs a 3D mesh as a parametric CAD program, growing its sequence of operations one at a time and comparing the target with the currently predicted geometry at every step. We also address the lack of benchmarks for evaluating reverse-engineering methods on mechanical parts, introducing CADENA-Bench, a benchmark that measures performance across categories of mechanical parts. CADENA outperforms prior methods on CADENA-Bench and on the DeepCAD, Fusion 360, and MCB datasets. Code is available at https://github.com/zhemdi/cadena, model weights at https://huggingface.co/kulibinai/cadena, and CADENA-Bench at https://huggingface.co/datasets/kulibinai/cadena-bench.

Prompt inversion, as a typical reverse engineering technique, enables text-to-image (T2I) diffusion models to generate the desired target images without extensive prompt engineering. However, existing prompt inversion methods suffer from significant limitations: (1) gradient-based methods are unstable and uninterpretable, often resulting in generated images with severe artifacts; (2) gradient-free methods yield human-readable prompts but still fail to preserve visual fidelity due to the lack of fine-grained detail alignment. We contend that the limitations stem from treating prompt inversion as a sufficient condition for reverse engineering, ignoring the critical role of the latent noise that encodes structural information. Consequently, we propose Dualin (Dual inversion), a two-stage method that jointly recovers both the semantic prompt and latent noise of the target image. In the first stage, we integrate vision-language model, CLIP and large language model to invert a faithful, human-interpretable hard prompt. In the second stage, unconditional DDIM inversion reconstructs the exact latent noise of the target image, guaranteeing the consistency at the structural information level. Theoretically, we prove that the inverted noise enables flexible image editing without re-optimization. Extensive experiments on diverse datasets demonstrate that Dualin simultaneously generates high-quality inverted prompts and achieves state-of-the-art image fidelity. Additionally, Dualin can establish a robust foundation for the precise and controllable image editing.

We present a practical pipeline for recovering source code from stripped binary functions by combining reverse engineering, anchor-based source code retrieval, and large language model reasoning. Our binary-to-source-code retrieval method attempts to identify the source function from a source code database, rather than generating approximate decompiled pseudocode. It extracts anchors such as strings, constants, external calls, and available function names using Ghidra, retrieves candidate files via an inverted-index search database, narrows candidates to likely function snippets, and re-ranks them with a large language model (LLM) based on disassembly, decompiled code, and source metadata. Confident matches can also serve as anchors in later passes. In an evaluation backed by our high-fidelity source code database on a stripped, optimized tcpdump binary, our proposed binary-to-source matching method achieves 95.2% assembly instruction coverage. Experiments on a GitHub-based retrieval database showed lower performance with 35.5% instruction coverage on average, mainly due to retrieval misses. These results show that source-level binary recovery excels with high-quality databases and remains a useful tool in noisy environments.

The NIS-2 Directive increases the need for continuous, auditable compliance evidence and motivates a shift from document-based compliance toward machine-readable compliance artifacts. The Open Security Controls Assessment Language (OSCAL) is a standard for this purpose, which the German Federal Office for Information Security (BSI) is adapting with Grundschutz++. However, companies are still managing extensive legacy IT security concepts (IT-SCs), and migrating them without verification could transfer outdated assets into the new format. While existing research primarily addresses the generation of new concepts, there is a lack of a verification framework that extracts legacy IT-SCs into an auditable intermediate representation, deterministically compares the extracted graph with an independently constructed reference state, and exports schema-valid OSCAL artifacts. This paper introduces the Automated Security Concept Structure Extraction and Reverse Topology-checking (ASSERT) Framework, which addresses this gap by using ontology-based extraction of legacy documents into formal document graphs, a five-class graph difference against a verified reference graph, and the export into schema-valid OSCAL outputs for system description and assessment evidence. Using the BSI's RecPlast dataset, we compare a local open-weight model and a commercial model across three configurations with different levels of reference-ontology exposure. The evaluation shows that ASSERT makes document-infrastructure inconsistencies measurable, but reveals a trade-off between discovering undocumented entities and enforcing a schema.

Large language models (LLMs) are increasingly applied to reverse-engineering tasks, and recent threat-intelligence reporting shows them operating inside live offensive-security workflows. Claims about their capability, however, outpace our ability to measure it. Existing benchmarks for LLM-assisted binary analysis treat the construction of function-level ground truth as a solved pre-processing step and report accuracy without disclosing how many functions were reliably evaluable. We argue that the principal obstacle to fair evaluation is not model capability but the reliability of binary-to-source alignment under compiler optimization. This paper presents Reforge, a provenance-tracked pipeline that constructs function-level ground truth from C source through compilation, DWARF and syntactic extraction, alignment, and decompilation, and that operationalizes alignment uncertainty as an eight-gate confidence funnel with three-tier stratification. On a controlled micro-benchmark, high-confidence yield falls from 87.2% to 65.9% across optimization levels, and unpaired comparisons overstate optimization-induced performance decay through survivorship bias. A proof-of-concept evaluation of seven contemporary LLMs on function naming demonstrates the substrate and motivates uncertainty-aware benchmarking practice

For most of scientific history, researchers studying behavior could only infer hidden mechanisms from outward actions: an inverse problem that becomes more tractable when observation is augmented by targeted intervention. We pose a computational analogue: given only behavioral traces of an agent in a game environment, can a learner reconstruct the underlying decision program as executable code, and how much does this reconstruction improve with the ability to design controlled experiments? We introduce RevengeBench, a benchmark of 75 LLM generated, Elo-calibrated policies across five game environments, drawn from CodeClash tournament trajectories. The learner observes the hidden target policy play against sampled opponents and designs behavioral probes in the form of custom opponent policies that elicit informative behavior. It then submits an executable hypothesis, which is evaluated using continuous action-distance metrics. We further validate that recovered code carries informative signal in downstream player-versus-player tournaments. Across twelve frontier LLMs, recovery quality varies substantially (34 to 72% of initial distance closed), with reconstructed policies yielding measurable competitive advantage, particularly for weaker models that otherwise struggle to design effective counter-strategies. Our benchmark positions behavioral recovery of programmatic policies as a tractable inverse problem in code-space, opening a path to opponent modeling, policy interpretability, and the broader question of inferring latent mechanisms from observations.

Binary reversing is fundamental to software understanding, vulnerability discovery, malware investigation, and firmware auditing. However, it remains inherently challenging due to the irreversible loss of semantic information during compilation. Recent advances in machine learning, large language models (LLMs), and agentic AI systems have accelerated the adoption of AI-augmented binary reversing. Yet, the resulting body of work has become increasingly fragmented across reversing domains, artifact representations, learning approaches, and evaluation practices. This paper presents the first comprehensive systematization of knowledge on AI-augmented binary reversing. We analyze 144 research papers published since 2015, and organize them into 22 binary reversing domains according to the inference tasks. We further introduce a unified taxonomy spanning conventional and AI-augmented reversing pipelines. Our taxonomy connects traditional analysis techniques, binary-derived artifacts, representation strategies, learning paradigms, and downstream inference tasks, while clarifying the emerging roles of LLMs and agentic AI systems. By establishing a common vocabulary and structured framework, we provide a holistic view of the field's evolution over the past decade. Our study reveals common structures underlying seemingly disparate approaches, highlights persistent technical challenges and evaluation gaps, and identifies promising opportunities for future research. Collectively, these insights clarify the current state of the field and provide a foundation for the next generation of reliable and scalable AI-augmented binary reversing systems.

Automatic decompilers produce functionally correct but often unreadable C code. This paper addresses one stage of the reverse engineering workflow: improving the readability of decompiled code using LLM agents guided by quantitative metrics. We present a three-phase research evolution. Phase 1 (tool-driven steering via Ghidra MCP) suffered from incomplete coverage and inconsistent improvements due to lack of quantitative guidance. Phase 2 (structural similarity validation alone) revealed that agents optimize for metrics in unintended ways, producing structurally equivalent but less readable code. Our contribution is the Quantitative Readability Score (QRS) framework, a composite metric combining a structural similarity gate with three independent readability sub-metrics (Lexical Surprisal, Structural Simplicity, and Idiomatic Quality). We demonstrate that QRS-guided refinement enables LLM agents to make targeted readability improvements without sacrificing correctness. We provide a discussion of the broader reverse engineering workflow (binary lifting, decompilation cleanup, and achieving functional equivalence) as context, however, it remains out of scope.

Agentic software reverse engineering systems are vulnerable to prompt injection attacks placed into the source code of executable binary files. This research demonstrates defensive tactics for detecting the presences of prompt injection strings in the decompiler output of adversarial example programs. Methods for obfuscating these attacks and subsequent methods for defending against these obfuscations are also explored. This research advances the understanding of risk and security of agentic software analysis systems necessary for their deployment into production-level cyber workflows.

Software tools for reverse engineering executable binary files, such as Ghidra, enable malware analysts to safely conduct robust static analysis without having access to original source code. Coupled with the analytic power of large language models (LLM), agentic systems enabled with tools, such as GhidraMCP, can allow analysts to automate a previously human driven process. Although this automation can increase the productivity of a single malware analyst, it also introduces a new area of vulnerability for malware obfuscation. This paper presents an adversarial technique using genetic algorithm-based prompt generation, a modification of an adversarial attack known as AutoDAN, to demonstrate the ability to deceive LLM-powered disassembly and decompilation systems into misinterpreting binary executables, effectively corrupting their analytical output. This proof-of-concept methodology exploits inherent vulnerabilities in how LLMs process and interpret decompiled machine code via prompt injection by using extraneous string variable assignments to pass surreptitious instructions to the LLM while not impacting the functionality of the executable file. We demonstrate this capability through several concise examples. This approach could enable attackers to bypass automated detection systems that rely on LLM-driven analysis pipelines. By studying and understanding this attack, insights can be gained regarding the security implication of integrating LLMs into cybersecurity toolchains and building more robust agentic code analysis systems.

Legacy systems concentrate business rules, architectural decisions, and operational exceptions that often remain implicit in code, data, configuration, and maintenance practices. At the same time, language-model-based coding agents depend on reliable context, correctness criteria, and behavioral contracts to modify real systems with lower risk. This paper presents Reversa, a reverse documentation engineering framework for converting legacy software into traceable operational specifications for AI agents. Reversa organizes this process as a multi-agent pipeline: specialized agents map the project surface, analyze modules, extract implicit rules, synthesize architecture, write unit-level specifications, and review generated claims. The proposal emphasizes three mechanisms: traceability between code and specification, explicit confidence marking, and preservation of gaps for human validation. The framework is distributed as a Node.js CLI, installs skills across multiple agent engines, and uses a SHA-256 manifest to preserve modified files during update or uninstall operations. In addition to the architectural description, we report an exploratory case study on migrating an ATM from COBOL to Go, in which the pipeline produced 517 claims classified by an internal confidence index, 10 registered gaps, 53 Gherkin parity scenarios, and a reconstruction plan with 9 of 11 tasks completed at inventory time. Final parity validation and cutover were not completed in this study. We do not claim broad empirical superiority; we position the contribution with respect to the literature on reverse engineering, LLM-based documentation, and software agents, and propose an evaluation protocol with metrics for coverage, traceability, confidence, utility, and cost.

Decompilers are useful tools used in reverse engineering to understand compiled source code. Reconstructing source code from compiled binaries is a challenging task, because high-level syntax, identifiers, and custom data types are generally lost as the compiler translates human-readable code to low-level machine code. Deterministic decompilers are useful tools for binary analysis, but can struggle to infer idiomatic syntax and identifier names. Generative AI models are a natural fit for reconstructing high-level syntax, identifiers, and types, but they can still suffer by hallucinating improper programming constructs and semantics. Instead of attempting to improve neural decompilers with more data and more training, we argue that compiler feedback can be used to dramatically improve the semantic correctness of neural decompiler outputs via search. Our system, Decaf (DECompilation with Automated Feedback), raises the neural decompilation rate from 26.0% on ExeBench to 83.9% on the Real -O2 split without sacrificing similarity to the original source code. We also find our automatic feedback methodology is highly effective for improving weaker neural decompilation models.

Benchmarks for coding agents increasingly measure source-level software repair, and cybersecurity benchmarks increasingly measure broad capture-the-flag performance. Classical binary reverse engineering remains less precisely specified: given only an executable, can an agent recover validation logic and produce an input, serial, artifact, or key generator accepted by the program? We introduce CrackMeBench, a benchmark for evaluating language-model agents on educational CrackMe-style reverse-engineering tasks. CrackMeBench focuses on deterministic binary validation problems with executable oracles, symbol-poor binaries, explicit local tool access, and externally scored submissions rather than free-form explanations. The v0 benchmark combines eight public calibration CrackMes with twelve generated main-score tasks built from seeded C, Rust, and Go templates, and agents run through an equal shell interface in a no-network Linux Docker sandbox with standard reverse-engineering tools. In a three-model evaluation with a five-minute budget and three scored submissions per task, pass@3 on the generated split is 11/12 tasks (92%) for GPT-5.5, 7/12 (58%) for Claude Opus 4.7, and 5/12 (42%) for Kimi K2. The harder generated half separates the models more sharply, with pass@3 of 5/6, 2/6, and 1/6, respectively; on the eight-task public calibration split, pass@3 is 3/8, 2/8, and 1/8. CrackMeBench records pass@1 and pass@3, scored submissions, wall-clock time, command traces, tool categories, provider-reported token usage, estimated cost, and qualitative failure labels, providing a reproducible testbed for measuring progress from source-code reasoning toward autonomous binary analysis while restricting scope to educational, purpose-built programs.

Security updates create a short but important window in which defenders and attackers can compare vulnerable and patched software. Yet in many operational settings, the most accessible artifacts are binary packages rather than source patches or advisory text. This paper asks whether a language-model agent, restricted to local binary-derived evidence, can reconstruct the security meaning of Linux distribution updates. Patch2Vuln is a local, resumable pipeline that extracts old/new ELF pairs, diffs them with Ghidra and Ghidriff, ranks changed functions, builds candidate dossiers, and asks an offline agent to produce a preliminary audit, bounded validation plan, and final audit. We evaluate Patch2Vuln on 25 Ubuntu .deb package pairs: 20 security-update pairs and five negative controls, all manually adjudicated against private source-patch and binary-function ground truth. The agent localizes a verified security-relevant patch function in 10 of 20 security pairs and assigns an accepted final root-cause class in 11 of 20. Oracle diagnostics show that six security pairs fail before model reasoning because the binary differ or ranker omits the right function, with one additional context-export miss. A separate bounded validation pass produces two target-level minimized behavioral old/new differentials, both for tcpdump, but no crash, timeout, sanitizer finding, or memory-corruption proof; all five negative controls are classified as unknown and produce no validation differentials. These results support agentic vulnerability reconstruction from binary patches as a useful research target while showing that binary-diff coverage and local behavioral validation remain the limiting components.

Function association is a useful process for binary reverse engineers. Search tools exist to perform association at scale, but they do not utilize the full range of capabilities that AI-enabled search provides. Prior work has explored the development of embedding models for association between certain reverse engineering code representations, but that work does not cover bidirectional association between source code and decompiled, stripped code with standard preprocessing requirements. To bridge this gap, we formalize this function association problem and evaluate the extent to which embedding models can bidirectionally associate between these two representations. To improve model performance at this task, we fine-tune a Qwen3-Embedding model with contrastive learning. We find that our new model outperforms other models on all function association baselines by a substantial margin and generalizes to a constant-algorithm association task it is not explicitly trained on.

Large Language Models (LLMs) have achieved remarkable progress in recent years, driving their adoption across a wide range of domains, including computer security. In reverse engineering, LLMs are increasingly applied to critical tasks such as function and variable name recovery and type inference. However, despite the rapid growth of research in this area, progress has been hindered by the absence of a standardized dataset. Existing studies rely on disparate datasets, preprocessing pipelines, and evaluation metrics, making fair comparisons between approaches difficult and obscuring a clear understanding of LLM capabilities in binary analysis. To address these challenges, we present REBench, a comprehensive benchmark dataset for evaluating LLMs on binary reverse engineering tasks. REBench consolidates a superset of existing datasets, comprising hundreds of millions of lines of source code and a diverse collection of binaries spanning multiple architectures and optimization levels. REBench adopts a knowledge-base-driven methodology that stores byte-level stack information to generate ground truth, ensuring that task difficulty is preserved while maintaining universal applicability. This design enables fair evaluation across tasks while avoiding simplifications that could bias results. As a use case, we apply REBench to measure the reverse engineering performance of LLMs and the result demonstrates difficulties in complex tasks.

Software documentation frequently becomes outdated or fails to exist entirely, yet developers need focused views of their codebase to understand complex systems. While automated reverse engineering tools can generate UML diagrams from code, they produce overwhelming detail without considering developer intent. We introduce query-driven UML diagram generation, where LLMs create diagrams that directly answer natural language questions about code. Unlike existing methods, our approach produces semantically focused diagrams containing only relevant elements with contextual descriptions. We fine-tune Qwen2.5-Coder-14B on a curated dataset of code files, developer queries, and corresponding diagram representations in a structured JSON format, evaluating with both automatic detection of structural defects and human assessment of semantic relevance. Results demonstrate that fine-tuning on a modest amount of manually corrected data yields dramatic improvements: our best model achieves the highest F1 scores while reducing defect rates below state-of-the-art LLMs, generating diagrams that are both structurally sound and semantically faithful to developer queries. Thus, we establish the feasibility of using LLMs for scalable contextual, on-demand documentation generation. We make our code and dataset publicly available at https://github.com/i-need-a-pencil/query2diagram.

The transition from neural machine translation to agentic workflows has revolutionized Automated Program Repair (APR). However, existing agents, despite their advanced reasoning capabilities, frequently suffer from the Intent Gap'' -- the misalignment between the generated patch and the developer's original intent. Current solutions relying on natural language summaries or adversarial sampling often fail to provide the deterministic constraints required for surgical repairs. In this paper, we introduce \textsc{Prometheus}, a novel framework that bridges this gap by prioritizing \textit{Specification Inference} over code generation. We employ Behavior-Driven Development (BDD) as an executable contract, utilizing a multi-agent architecture to reverse-engineer Gherkin specifications from runtime failure reports. To resolve the Hallucination of Intent,'' we propose a \textbf{Requirement Quality Assurance (RQA) Loop}, a mechanism that leverages ground-truth code as a proxy oracle to validate inferred specifications. We evaluated \textsc{Prometheus} on 680 defects from the Defects4J benchmark. The results are transformative: our framework achieved a total correct patch rate of \textbf{93.97%} (639/680). More significantly, it demonstrated a \textbf{Rescue Rate of 74.4%}, successfully repairing 119 complex bugs that a strong blind agent failed to resolve. Qualitative analysis reveals that explicit intent guides agents away from structurally invasive over-engineering toward precise, minimal corrections. Our findings suggest that the future of APR lies not in larger models, but in the capability to align code with verified, \textbf{Executable Specifications} -- whether pre-existing or reverse-engineered.

Code deobfuscation is the task of recovering a readable version of a program while preserving its original behavior. In practice, this often requires days or even months of manual work with complex and expensive analysis tools. In this paper, we explore an alternative approach based on Chain-of-Thought (CoT) prompting, where a large language model is guided through explicit, step-by-step reasoning tailored for code analysis. We focus on control flow obfuscation, including Control Flow Flattening (CFF), Opaque Predicates, and their combination, and we measure both structural recovery of the control flow graph and preservation of program semantics. We evaluate five state-of-the-art large language models and show that CoT prompting significantly improves deobfuscation quality compared with simple prompting. We validate our approach on a diverse set of standard C benchmarks and report results using both structural metrics for control flow graphs and semantic metrics based on output similarity. Among the tested models and by applying CoT, GPT5 achieves the strongest overall performance, with an average gain of about 16% in control-flow graph reconstruction and about 20.5% in semantic preservation across our benchmarks compared to zero-shot prompting. Our results also show that model performance depends not only on the obfuscation level and the chosen obfuscator but also on the intrinsic complexity of the original control flow graph. Collectively, these findings suggest that CoT-guided large language models can serve as effective assistants for code deobfuscation, providing improved code explainability, more faithful control flow graph reconstruction, and better preservation of program behavior while potentially reducing the manual effort needed for reverse engineering.

While Large Language Models (LLMs) demonstrate increasingly sophisticated affective capabilities, the internal mechanisms by which they process complex emotions remain unclear. Existing interpretability approaches often treat models as black boxes or focus on coarse-grained basic emotions, leaving the cognitive structure of more complex affective states underexplored. To bridge this gap, we propose a Cognitive Reverse-Engineering framework based on Representation Engineering (RepE) to analyze social-comparison jealousy. By combining appraisal theory with subspace orthogonalization, regression-based weighting, and bidirectional causal steering, we isolate and quantify two psychological antecedents of jealousy, Superiority of Comparison Person and Domain Self-Definitional Relevance, and examine their causal effects on model judgments. Experiments on eight LLMs from the Llama, Qwen, and Gemma families suggest that models natively encode jealousy as a structured linear combination of these constituent factors. Their internal representations are broadly consistent with the human psychological construct, treating Superiority as the foundational trigger and Relevance as the ultimate intensity multiplier. Our framework also demonstrates that toxic emotional states can be mechanically detected and surgically suppressed, suggesting a possible route toward representational monitoring and intervention for AI safety in multi-agent environments.