Spatial Attention

Predicting gene expression from H&E-stained histology images offers a scalable alternative to costly spatial transcriptomics, yet most existing methods operate at the spot level, where signals from multiple cells are aggregated and critical cellular heterogeneity is obscured. Extending this paradigm to single-cell resolution is non-trivial. Naively applying pathology foundation models faces a scale mismatch: their patch-level representations mix multiple cells, whereas per-cell cropping or resizing distorts morphology and removes local context. Conversely, segmentation-based models without strong pretrained visual encoders often lack the morphological representation capacity needed for accurate molecular prediction and inherit errors from imperfect cell boundary masks. Here, we present CELLO, an efficient end-to-end framework that performs a single pathology foundation model forward pass per image and uses grid sampling to extract location-specific features for all cells simultaneously. We further introduce a distance-decay cross-attention module that refines each cell representation using spatially biased local morphological context. Using 52 public Xenium-H&E pairs from HEST-1k that span 12 organs and approximately 10 million cells, CELLO improves the average predictive accuracy over the evaluated baselines while reducing the mean whole-slide inference time compared to DeepSpot2Cell, a 14.0x speed-up on average that excludes upstream cell segmentation. Our work establishes a scalable foundation for single-cell gene expression prediction from H&E images.

Predicting human gaze is a core capability for applications ranging from web/UI design analysis to robotics and human-computer interaction. Yet, most visual attention modeling methods output only a dense saliency map, which is often insufficient for action: practitioners need to connect attention peaks to discrete elements in the scene (what) and understand the drivers of those peaks in context (why), while remaining robust to domain shift across natural images, commercial content, and UI/web layouts. We, therefore, introduce OpenVAM (Open-world Visual Attention Modeling with VLMs), a unified framework that jointly addresses universality and explainability across heterogeneous domains (natural scenes, commercial imagery, and UI/web layouts) and supervision modalities. OpenVAM adopts a decoupled-but-aligned design: a dedicated dense visual pathway provides stable, spatially precise localization, while an instruction-following vision--language semantic head generates grounded what/why explanations conditioned on the same image and data-type prompts. A three-stage training strategy preserves strong localization priors while progressively introducing language grounding and improving explanation alignment via parameter-efficient adaptation without perturbing the saliency branch. We further propose a scalable pipeline to generate multi-domain saliency-reason annotations for training and systematic evaluation. Experiments across diverse datasets show that OpenVAM improves robustness under domain shift while producing image-grounded explanations that make saliency predictions more interpretable.

Dense self-attention treats all token pairs as equally plausible before learning, an interaction-isotropic prior that can be mismatched to structured signals. For structured, low signal-to-noise ratio (SNR) signals such as EEG, dependencies are organized along the electrode and time axes, and this uniform prior exposes each token to many irrelevant interactions. We introduce Adaptive Anisotropic Attention (AAA), which splits attention into two paths: a temporal path, where each token attends to the tokens of its own electrode across time, and a spatial path, where it attends to the tokens of the other electrodes at the same time step. A small gate predicts, for every token, a convex combination of the two path outputs: two non-negative weights that sum to one. On six EEG downstream tasks, the resulting model, AXON (AXis-factorized Operator Network), improves mean balanced accuracy over a dense baseline under both linear probing and full fine-tuning. We show that both paths (temporal and spatial) are necessary and that the weighted sum beats a hard choice of one path; most of the benefit comes from the gate learning a different temporal/spatial balance at each layer of the network. Controlled audio spectrogram experiments show that axis factorization transfers beyond EEG. These results suggest that aligning attention with the natural axes of structured signals provides a useful inductive bias.

World models for visual control typically learn compact latent states by reconstructing observations, implicitly encouraging representations to preserve information across the entire visual input. However, task-relevant content often occupies only a small fraction of the observation, while background clutter and distractors consume valuable representational capacity. This mismatch between visual reconstruction and control objectives biases latent representations to model task-irrelevant visual content, diluting learning signals for control-relevant features and severely degrading downstream performance under visual distractions. We introduce TaskSense, a task-centric world modeling framework that enforces task relevance before latent encoding through a differentiable stochastic spatial attention mechanism conditioned on the previous latent state. To steer attention toward control-relevant regions, we augment training with an auxiliary inverse-dynamics objective. Rather than reconstructing the full observation, the world model reconstructs only the attended regions, encouraging latent representations to preserve task-relevant information while discarding irrelevant visual content. The decoder is further conditioned on the sampled attention map, enabling consistent reconstruction despite stochastic attention. Compared with the DreamerV3 baseline, TaskSense maintains competitive performance on the DeepMind Control Suite while consistently outperforming DreamerV3 on the Distracting Control Suite, demonstrating substantially improved robustness to visual distractions. Qualitative analysis further confirms that the learned attention, guided by inverse-dynamics supervision, consistently localizes control-relevant regions while suppressing irrelevant visual content.

Existing traffic forecasting models commonly focus on extracting spatial dependencies, particularly global spatial information, which characterizes the representations obtained through interactions between each individual node and all nodes across the traffic network. However, the underlying mechanism by which such global information is modeled and extracted remains insufficiently investigated. Whether global information must be extracted by high-degree-of-freedom adaptive attention or can be captured by a simple global aggregation operator remains unclear. For this purpose, we design a controlled ablation framework that replaces only the spatial mixing module to test attention-based global interaction. Across six traffic benchmarks, uniform full-range mixing and standard spatial attention each achieve lower MAE on three datasets, with only a 0.14% difference in mean MAE, while the former reduces node-scale spatial mixing complexity from O(N2) to O(N). Mechanism analysis further decomposes spatial attention into a row-uniform global background and a non-uniform residual. The residual shows dataset-dependent marginal value, suggesting that spatial attention should be justified by stable gains beyond a row-uniform global background. The corresponding source code is publicly available at: https://github.com/uuesti/U-Trans

Visual perception depends on top-down goals and bottom-up sensory mechanisms. Vision-language models implement both, allowing us to treat each component as a separable hypothesis about what drives where we look. We compared spatial attention maps from six vision-language models against human fixation heatmaps recorded on 200 images during two tasks (general description and social captioning). The six models spanned a 2$\times$2 factorial of CNN vs.\ ViT encoders crossed with LSTM vs.\ Transformer decoders, plus Molmo 7B-D and Qwen3.5 9B. We found that both decoder and encoder architecture shaped alignment, but decoder choice dominated. LSTM vs.\ Transformer decoders increased alignment by 40--50 percentage points (80--87% vs.\ 40--59% of the human noise ceiling). In contrast, CNN vs.\ ViT encoders contributed a secondary 5--20 point advantage depending on decoder family, with CNN-LSTM the most aligned model overall (85--87%). Despite their alignment advantage, LSTM-decoder attention maps were spatially diffuse and minimally task-differentiated; ViT-Transformer, the weakest in alignment, showed the sharpest spatial concentration and strongest task differentiation. A hemispatial-neglect simulation confirmed that ablating attention impacted LSTM decoders more than Transformer decoders. In an exploratory extension using TRIBE-simulated synthetic neural responses, fixation alignment and neural relevance dissociate: CNN-Transformer attention maps better predicted synthetic brain activity despite lower fixation alignment, with attention maps best predicting early visual cortex. Together, top-down and bottom-up components trade off what they predict in behavioral and synthetic neural data.

Concept bottleneck models (CBMs) predict a layer of human-named attributes before predicting a class, which makes their decisions auditable. On fine-grained recognition tasks the concept heads are usually free to attend anywhere in the image, so a head named for one body region can be satisfied by evidence on another. This work studies a part-factorized CBM that removes that freedom by construction. The method has three components built on a frozen DINOv3 vision transformer. A learned foreground gate, trained on DINOv3 patch features, suppresses background patches inside the part attention. A set of part queries cross-attends to patch features and each of the 312 CUB attributes is routed, through a fixed concept-to-part map, to read only from the part token its name implies. A learnable two-dimensional Gaussian prior, injected additively in log space into the attention logits, breaks the permutation symmetry among part queries; its means are initialized from the dataset-average keypoint location of each part, which requires no per-image keypoint supervision at training or test time. On CUB-200-2011 the spatial-prior model matches a fully supervised baseline (88.85% versus 88.95% top-1) while raising pointing accuracy by 16 points (52.6% versus 36.4%). Replacing bounding-box supervision with a PCA foreground target and combining it with the Gaussian prior removes all per-image supervision and reaches 88.6% top-1 at about 70% pointing accuracy. A keypoint-fraction sweep shows that 0.5% of the training set (about 27 images) suffices to initialize the prior with no measurable loss. Removing part identity entirely is the harder case: without any spatial prior, pointing accuracy collapses to $2.9\%$.

Robots operating in open, unstructured real-world environments must rely on onboard visual perception while autonomously moving across different locations. Continuous changes in onboard camera viewpoints cause significant visual scale variations in target objects, affecting vision-based motion generation. In this work, we present a stereo multistage spatial attention-based deep predictive learning method for real-time mobile manipulation. The proposed methods extracts task-relevant spatial attention points from stereo images and integrates them with robot states through a hierarchical recurrent architecture for closed-loop action prediction. We evaluate the system on four real-world mobile manipulation tasks using a mobile manipulator, including rigid placement, articulated object manipulation, and deformable object interaction. Experiments under randomized initial positions and visual disturbance conditions demonstrate improved robustness and task success rates compared to representative imitation learning and vision-language-action baselines under identical control settings. The results indicate that structured stereo spatial attention combined with predictive temporal modeling provides an effective solution within the evaluated mobile manipulation scenarios.

Spatial transcriptomics (ST) enables mapping gene expression with spatial context but is severely affected by high sparsity and technical noise, which conceals true biological signals and hinders downstream analyses. To address these challenges, SpatialMagic was proposed, which is a hybrid imputation model combining MAGIC-based graph diffusion with transformer-based spatial self-attention. The long-range dependencies in the gene expression are captured by graph diffusion, and local neighborhood structure is captured by spatial attention models, which allow for recovering the missing expression values, retaining spatial consistency. Across multiple platforms, SpatialMagic consistently outperforms existing baselines, including MAGIC and attention-based models, achieving peak Adjusted Rand Index (ARI) scores in clustering accuracy of 0.3301 on high-resolution Stereo-Seq data, 0.3074 on Slide-Seq, and 0.4216 on the Sci-Space dataset. Beyond quantitative improvements, SpatialMagic substantially enhances downstream biological analyses by improving the detection of both up- and down-regulated genes while maintaining regulatory consistency across datasets. The pathway enrichment analysis of the recovered genes indicates that they are involved in consistent processes across key metabolic, transport, and neural signaling pathways, suggesting that the framework improves data quality while preserving biological interpretability. Overall, SpatialMagic's hybrid diffusion attention strategy and refinement module outperform state-of-the-art baselines on quantitative metrics and provide a better understanding of the imputed data by preserving tissue architecture and uncovering biologically relevant genes. The source code and datasets are provided in the following link: https://github.com/sayeemzzaman/SpatialMAGIC

Automatic facial expression recognition (FER) has gained much attention due to its applications in human-computer interaction. Among the approaches to improve FER tasks, this paper focuses on deep architecture with the attention mechanism. We propose a novel Masking idea to boost the performance of CNN in facial expression task. It uses a segmentation network to refine feature maps, enabling the network to focus on relevant information to make correct decisions. In experiments, we combine the ubiquitous Deep Residual Network and Unet-like architecture to produce a Residual Masking Network. The proposed method holds state-of-the-art (SOTA) accuracy on the well-known FER2013 and private VEMO datasets. The source code is available at https://github.com/phamquiluan/ResidualMaskingNetwork.

Internet of Things (IoT) networks face significant challenges such as limited communication bandwidth, constrained computational and energy resources, and highly dynamic wireless channel conditions. Utilization of deep neural networks (DNNs) combined with semantic communication has emerged as a promising paradigm to address these limitations. Deep joint source-channel coding (DJSCC) has recently been proposed to enable semantic communication of images. Building upon the original DJSCC formulation, low-complexity attention-style architectures has been added to the DNNs for further performance enhancement. As a main hurdle, training these DNNs separately for various signal-to-noise ratios (SNRs) will amount to excessive storage or communication overhead, which can not be maintained by small IoT devices. SNR Adaptive DJSCC (ADJSCC), has been proposed to train the DNNs once but feed the current SNR as part of the data to the channel-wise attention mechanism. We improve upon ADJSCC by a simultaneous utilization of doubly adaptive channel-wise and spatial attention modules at both transmitter and receiver. These modules dynamically adjust to varying channel conditions and spatial feature importance, enabling robust and efficient feature extraction and semantic information recovery. Simulation results corroborate that our proposed doubly adaptive DJSCC (DA-DJSCC) significantly improves upon ADJSCC in several performance criteria, while incurring a mild increase in complexity. These facts render DA-DJSCC a desirable choice for semantic communication in performance demanding but low-complexity IoT networks.

Spatial computation in geographic systems increasingly requires query-conditioned, local, interpretable aggregation under metric constraints. Many classical approaches rely on global summation and treat approximation as an implementation concern, limiting interpretability and scalability at large scales. We propose the Adaptive Density Field (ADF), a geometric attention framework that formulates spatial aggregation as a query-conditioned, metric-induced attention operator in continuous space. Given a set of labelled spatial points with associated scalar scores, ADF defines a continuous intensity field over space. For a given query location, the field value is obtained via a local adaptive Gaussian kernel mixture centered on the query's nearest neighbors, where kernel bandwidths are modulated by point-specific scores to evaluate local aggregated influence. Additionally, approximate nearest-neighbor search is introduced, enabling scalable execution while preserving locality. The proposed ADF bridges concepts from adaptive kernel methods, classical GIS methods, and attention mechanisms by reinterpreting spatial influence as geometry-embedded attention, grounded in physical distance rather than learned latent projections. The proposed framework is formulation-level rather than algorithm-specific, allowing flexible kernel choices, score-to-bandwidth mappings, and approximation parameters. This approach provides a unifying perspective on spatial influence modeling that emphasizes structure, scalability, and geometric interpretability, with relevance to geographic information systems and spatial machine learning.

Specific emitter identification (SEI) utilizes passive hardware characteristics to authenticate transmitters, providing a robust physical-layer security solution. However, most deep-learning-based methods rely on extensive data or require prior information, which poses challenges in real-world scenarios with limited labeled data. We propose an integrated complex variational mode decomposition algorithm that decomposes and reconstructs complex-valued signals to approximate the original transmitted signals, thereby enabling more accurate feature extraction. We further utilize a temporal convolutional network to effectively model the sequential signal characteristics, and introduce a spatial attention mechanism to adaptively weight informative signal segments, significantly enhancing identification performance. Additionally, the branch network allows leveraging pre-trained weights from other data while reducing the need for auxiliary datasets. Ablation experiments on the simulated data demonstrate the effectiveness of each component of the model. An accuracy comparison on a public dataset reveals that our method achieves 96% accuracy using only 10 symbols without requiring any prior knowledge.