Overview

Virtual screening aims to narrow large compound libraries to candidates worth testing experimentally, using protein–ligand docking and scoring, ligand-based machine learning, and learned molecular or 3D structure representations. Newer approaches use contrastive learning, generative models, active learning, and target-specific adaptation to improve ranking or search very large libraries efficiently. Success is often measured by early hit enrichment and recovery of diverse compounds, not just overall ranking accuracy. A central challenge is that performance can fall on realistic hard-negative benchmarks or new targets, while calibration, minority-class reliability, and limited experimental data complicate trustworthy selection.

Latest papers

CardsList

20 papers1 paper in the last four weeks, down 80% on the four weeks before. 0.0% of all new papers.

  1. Historical-Feature Residual Adaptation for Sequential Screening

    Oct 13, 2026Yixiang Hong, Yuchen ZhangSequential Decision MakingLearning to Rank

  2. TopU-LBVS: A Realistic Multi Target Benchmark for Ligand Based Virtual Screening

    Sep 24, 2026Surbhi Kumar, Yuhe Zhou, Varun Shiralkar +2Benchmark DesignVirtual Screening

  3. Adapting Boltz-2 with limited experimental activity data improves early enrichment in virtual screening

    Sep 21, 2026Kairi Furui, Masahito OhueProtein-Ligand Binding Affinity PredictionVirtual Screening

  4. Autonomous discovery of new structure-plausibility laws for explainable and rapid crystal diagnosis and screening

    Sep 1, 2026Zhilong Song, Lixue ChengAI Agents for Scientific DiscoveryCrystal Structure Prediction

  5. PETA:Parameter-Efficient Test-Time Adaptation for Virtual Screening

    Aug 20, 2026Jia-Qi Lin, Yinghua Yao, Chang-Dong Wang +2Virtual ScreeningTest-Time Adaptation

  6. An LLM agent for end-to-end computational materials discovery

    Aug 20, 2026Chen Yuntong, Huang Lijiang, Li Yingqi +7Materials DiscoveryAI Agents for Scientific Discovery

  7. Domain-Adapted Molecular Language Models for Efficient Search of Make-on-Demand Libraries

    Aug 18, 2026Henrik Wille, Luis-Finley Schütz, Felix Strieth-KalthoffMolecular Representation LearningMolecular Foundation Models

  8. A Quiet Failure in Calibrated Virtual Screening: Marginal Conformal Prediction Under-Covers the Minority Class, and a Class-Conditional Fix Recovers It

    Jul 7, 2026Muhammadjon Tursunbadalov, Mustafojon TursunbadalovClass-Imbalanced LearningConformal Prediction

  9. Target-Aware Bandit Allocation for Scalable Surrogate Optimization in Chemical Space

    Jun 25, 2026Mohammad Haddadnia, Yuvan Chali, Abhilash Jayaraj +4Multi-Armed BanditsMolecular Optimization

  10. Benchmarking Single-Pose Docking, Consensus Rescoring, and Supervised ML on the LIT-PCBA Library: A Critical Evaluation of DiffDock, AutoDock-GPU, GNINA, and DiffDock-NMDN

    May 3, 2026Youssef Abo-Dahab, Xiaoiang Xiang, Joanne Chun +1Learning to RankVirtual Screening

  11. Structure-guided molecular design with contrastive 3D protein-ligand learning

    Apr 21, 2026Carles Navarro, Philipp Tholke, Gianni de FabritiisContrastive LearningVirtual Screening

  12. KANEL: Kolmogorov-Arnold Network Ensemble Learning Enables Early Hit Enrichment in High-Throughput Virtual Screening

    Mar 25, 2026Pavel Koptev, Nikita Krainov, Konstantin Malkov +1Virtual ScreeningMolecular Property Prediction

  13. Empowering Chemical Structures with Biological Insights for Scalable Phenotypic Virtual Screening

    Mar 16, 2026Xiaoqing Lian, Pengsen Ma, Tengfeng Ma +9Virtual ScreeningDrug Discovery

  14. From Word2Vec to Transformers: Text-Derived Composition Embeddings for Filtering Combinatorial Electrocatalysts

    Mar 9, 2026Lei Zhang, Markus StrickerVirtual ScreeningCompositional Representation Learning

  15. BindCLIP: A Unified Contrastive-Generative Representation Learning Framework for Virtual Screening

    Feb 16, 2026Anjie Qiao, Zhen Wang, Yaliang Li +2Virtual ScreeningMolecular Representation Learning

  16. APEX: Approximate-but-exhaustive search for ultra-large combinatorial synthesis libraries

    Oct 28, 2025Aryan Pedawi, Jordi Silvestre-Ryan, Bradley Worley +5Surrogate-Assisted OptimizationAI-Assisted Scientific Research

  17. Why Pool When You Can Flow? Active Learning with GFlowNets

    Aug 31, 2025Renfei Zhang, Mohit Pandey, Artem Cherkasov +1Active LearningVirtual Screening