Diffusion Models for Medical Image Segmentation

Latest papers

21 papers3 papers in the last four weeks, with none the four weeks before. 0.0% of all new papers.

Oct 21, 2026

OpenMAP-HIE: Pathology Informed Score-based Diffusion Model for Unsupervised Neonatal Hypoxic-Ischemic Encephalopathy Lesion Segmentation

Accurate localization of neonatal hypoxic--ischemic encephalopathy (HIE) lesions on apparent diffusion coefficient (ADC) images is clinically important but is limited by scarce expert annotations and substantial variation in lesion appearance. We propose OpenMAP-HIE, a pathology-informed score-based diffusion model for unsupervised HIE lesion localization without voxel-wise lesion supervision. A denoising diffusion model learns the healthy neonatal ADC distribution, while a ControlNet-based conditional branch preserves patient-specific anatomy. At inference, anomaly evidence is derived directly from differences between conditional and unconditioned noise predictions at independently evaluated diffusion noise levels, avoiding dependence on a final pseudo-healthy reconstruction or sequential reverse-diffusion chain. Based on the characteristic ADC reduction associated with acute HIE, only discrepancies consistent with the expected pathological direction are retained and aggregated across noise levels using a geometric mean. Spatial mean filtering further suppresses isolated responses. The framework was evaluated on the BONBID-HIE dataset. The ADC-only method achieved a Dice score of 0.283±0.2440.283\pm0.244, average precision of 0.5050.505, Hausdorff distance of 25.45±15.6325.45\pm15.63 mm, mean average surface distance of 9.40±8.499.40\pm8.49 mm, and normalized surface distance of 0.355±0.2360.355\pm0.236, providing the best overlap and surface-distance performance among the evaluated unsupervised methods and Dice performance comparable to supervised ADC-only models. Optional population-derived ADC ZZ-map refinement further increased Dice to 0.602±0.2690.602\pm0.269. These findings support pathology-informed score discrepancies as a useful signal for neonatal HIE lesion localization, while highlighting remaining challenges in detecting small and low-contrast lesions.
Oct 20, 2026

DART: Scaling a Shape Representation Across Anatomical Classes and Imaging Modalities

Current state-of-the-art segmentation models still produce anatomically implausible shapes, such as broken vessels and fragmented glands, on the structures that are hardest to segment. Learned shape representations capture what structures look like and can help correct these errors, but most cover a fixed set of anatomical classes. Extending this coverage across classes and imaging modalities is costly because it often requires new voxel-level annotations. We propose Diffusion for Anatomical Reshaping with Text (DART), which learns a shared shape representation from segmentation probabilities. It uses anatomical descriptions to correct these probabilities without receiving medical images. Across 13 public benchmarks, absolute Dice gains reach 31% for individual gallbladder cases in CT and 10% for individual prostate cases in MRI. Using existing segmentation predictions, we scale a single shape representation from 50 to 377 anatomical classes without new voxel-level annotations for correction training. The shared representation also corrects four lesion classes absent from training and transfers from CT to MRI without retraining. Corrected labels also improve segmentation models, raising one model's Dice from 57.1% to 67.5%. The same pipeline supports annotations for 45,000 CT scans. These results suggest that sharing shape information within and across classes can reduce the need for new voxel-level annotations when extending segmentation to more anatomical classes and imaging modalities. The model is available at https://huggingface.co/Koushik45/DART-Seg
Oct 7, 2026

Closing the Loop on Contrail Avoidance with Satellite Verification

Contrails are the thin ice clouds that aircraft leave behind. They cause a large share of aviation's warming, and rerouting the few flights that produce them could avoid much of it. However, an avoided contrail only counts if a satellite can confirm that it never formed, and this check is hard: contrails are one to two pixels wide, cover only 0.18% of pixels, and look very similar to natural cirrus. We build a small diffusion model (8.4M parameters, trained on one GPU) that detects them, and we run a controlled study to find out which components matter. The model reaches 0.476 PR-AUC, compared with 0.414 for a DeepLabV3+ baseline and 0.119 for an adapted MedSegDiff. Doubling the input resolution of the CNN brings it to parity (0.499, p=0.07). Three lessons apply beyond contrails. First, check the input resolution before designing a new architecture. Second, simple flips and rotations more than double accuracy and matter more than any architectural choice we measured. Third, pretraining the model on contrail shapes is harmful: the model learns that thin strokes appear everywhere and paints them onto empty scenes. Precision collapses to 1% while recall-based metrics still rate the degraded model as excellent, and no threshold or guidance heuristic repairs this failure.
Aug 26, 2026

Unsupervised Anatomical Feature Learning via Diffusion Models: Enhanced Medical Image Segmentation with Denoising Diffusion Probabilistic Models

Acquiring pixel-level annotations for medical image segmentation is a severe bottleneck. Traditional U-Net architectures, while effective, learn local texture patterns and lack awareness of global anatomical structures, leading to boundary delineation failures in low-data regimes. This research paper proposes utilizing unsupervised Denoising Diffusion Probabilistic Models (DDPMs) to extract anatomical features. We train a DDPM on 21 unlabeled abdominal CT scans to learn structural representations, transferring the encoder weights to a downstream segmentation task evaluated on the BTCV multi-organ dataset. Diffusion pretraining significantly improved liver segmentation: Dice increased from 0.75±0.360.75\pm0.36 to 0.93±0.160.93\pm0.16 (p<5.33×10−26p < 5.33\times10^{-26}, 0.529 Cohen's d), Average Surface Distance (ASD) decreased by 66%, and 95th-percentile Hausdorff Distance (HD95) reduced by 45%. For kidney segmentation, Dice improved from 0.90±0.190.90\pm0.19 to 0.95±0.100.95\pm0.10 (p<4.01×10−11p < 4.01\times10^{-11}). Multi-organ pooled performance showed a 68% variance reduction and a 74% improvement in boundary precision (Dice 0.95±0.070.95\pm0.07). Crucially, frozen encoder models retained > 80% of fine-tuned performance without exposure to segmentation labels, proving the existence of learned anatomical priors. In low-data scenarios, diffusion-pretrained models maintained robust performance with only 50% (Dice: 0.92 liver, 0.94 kidney), 25%, and even 10% (Dice: 0.89 liver, 0.71 kidney) of labeled data. Using unlabeled images for diffusion-based pretraining successfully embeds robust anatomical features prior to human supervision, transforming U-Nets into anatomy-aware systems.
Aug 23, 2026

GET: Generative Embedding Translation for Medical Image Segmentation

Generative segmentation provides an alternative to direct pixel-wise prediction by operating on learned latent representations, but effective image-to-mask translation must preserve target structure while remaining computationally efficient. We propose Generative Embedding Translation (GET), a structured embedding-translation framework that progressively transforms image embeddings into mask embeddings within the frozen latent space of a Stable Diffusion VAE. GET uses a U-Net-style Embedding Translation Network with 1.07M trainable parameters, combining Mobile Bottleneck Convolutions, Subsampled Self-Attention, and Multi-scale Feature Enrichment for local modeling, global context, and multi-scale refinement. Across five medical segmentation datasets, GET outperforms generative, CNN, and Transformer baselines. Compared with the strongest generative baseline, GMS, GET improves average Dice and IoU by 0.93% and 1.26%, reduces HD95 by 0.81 pixels, and uses 31.41% fewer trainable parameters. Under bidirectional BUS-BUSI domain shift, GET further improves Dice and IoU by 3.51% and 3.39%, while reducing HD95 by 27.37 pixels. Our code is available at: https://github.com/maklachur/GET.
Aug 12, 2026

KANResDiff: Learning Local Residual Diffusion via Kolmogorov-Arnold Network for Ambiguous Medical Image Segmentation

Ambiguous medical image segmentation aims to provide a series of diverse but plausible segmentation hypotheses. However, existing methods introduce stochasticity in a fixed and pre-defined manner, failing to form a progressive semantic modeling process. To address these challenges, we propose KANResDiff to learn local residual diffusion with Kolmogorov-Arnold Network, thereby assigning distinct roles across stages for ambiguity modeling. Specifically, we propose Independent Time Encoding that offers spline-based time embeddings instead of linear ones from MLPs, which enhances the independence across inference stages and assigns progressive semantic roles to different stages. We propose Residual Schrodinger Bridge that injects deterministic residual prior with learnable weights by constructing local Schrodinger Bridge instead of following manually settings, achieving a flexible deterministic-stochastic interaction and stage-aware ambiguity modeling thanks to local optimal diffusion path. Extensive experimental results on two public datasets demonstrate that KANResDiff achieves SOTA performance on GED and HM-IoU, with maximum improvements of 16.8% and 7.7%, respectively, while maintaining competitive performance on the MDM metric. Source code is available at https://github.com/PerceptionComputingLab/KANResDiff.
Aug 5, 2026

Enhancing Low Back Pain Assessment with Diffusion Models for Lumbar Spine MRI Segmentation

This study introduces a diffusion-based framework for robust and accurate semantic segmentation of lumbar spine MRI scans from patients with low back pain (LBP), regardless of whether the scans are T1- or T2-weighted. We compared with advanced models for segmenting vertebrae, intervertebral discs (IVDs), and spinal canal using the SPIDER dataset. The results showed that SpineSegDiff achieved a segmentation performance comparable to that of the state-of-the-art non-diffusion nnUnet, particularly in improving the identification of degenerated IVDs. In addition, the uncertainty maps generated by our model provide valuable insights for clinical review, enhancing the robustness and reliability of the segmentation results. The potential of diffusion models to enhance the diagnosis and management of LBP through more precise analysis of pathological spine MRI is underscored by our findings.
Jul 3, 2026

SNR-Adaptive Unified Diffusion for Multi-Task Medical Image Segmentation

Clinical cardiac imaging pipelines currently deploy separate models for each dataset and modality, incurring redundant training costs and precluding knowledge sharing across anatomically related tasks. Consolidating semi-supervised learning, unsupervised domain adaptation, and domain generalisation into one model is therefore a practical necessity, yet naive joint training exposes a fundamental barrier: conflicting label semantics between datasets collapse LA Dice from 90.31% to 83.38%, while gradient imbalance across tasks of unequal complexity suppresses the weaker tasks throughout training. We present UniT-Diff, a unified diffusion segmentation framework that resolves these conflicts through three targeted mechanisms. An 11-channel task-specific output space physically partitions label categories, eliminating cross-task gradient sign reversal by construction. SNR-Adaptive Task Conditioning (SATC) scales the task token by the log signal-to-noise ratio of the current diffusion timestep, suppressing domain-specific bias during coarse denoising and restoring full task guidance as the signal clears. Task-Type-Aware Conditional Dropout (TTACD) permanently removes the task token for domain-generalisation inputs, routing them through a shared neutral pathway that draws on cross-dataset cardiac anatomy rather than source-vendor statistics. Under a single parameter set, UniT-Diff surpasses independently trained task-specific baselines on all three benchmarks simultaneously: +0.87% on LA, +1.77% on MMWHS, and +0.88% on MNMS.
Jun 25, 2026

MLFFM-SegDiff: A Multi-Level Feature Fusion Diffusion Model for Skin Lesion Segmentation

Skin lesion segmentation is a key task in computer-aided dermatological diagnosis, where accuracy directly impacts downstream analysis and disease classification. However, dermoscopic images are challenging due to blurred boundaries, low contrast, large shape variations, and artifacts such as hair and shadows. Recently, diffusion models have shown strong performance in medical image segmentation thanks to their progressive denoising and distribution modeling capabilities. Nevertheless, existing diffusion-based methods still suffer from limited cross-level feature interaction and insufficient boundary detail recovery. To address these issues, we propose MLFFM-SegDiff, a multi-level feature fusion diffusion model for skin lesion segmentation. Built on a diffusion framework, the method introduces a dual-path U-Net encoder, a Multi-Level Feature Fusion Module (MLFFM), and a boundary-sensitive loss function. The dual-path encoder enhances interaction between noisy mask features and dermoscopic image features. MLFFM improves skip connections via attention, scale alignment, and adaptive cross-level fusion. These designs enable the decoder to jointly leverage shallow boundary cues and deep semantic representations, improving mask reconstruction quality. Experiments on ISIC2018, PH2, and HAM10000 demonstrate that MLFFM-SegDiff outperforms representative methods including DermoSegDiff, U-Net, and SwinUNETR across Accuracy, F1-score, Jaccard index, Recall, and Dice. In particular, it achieves an average Jaccard index of 0.8546 and Dice coefficient of 0.9207. These results validate the effectiveness of the proposed multi-level feature fusion strategy for improving lesion segmentation performance. The code will be released at https://github.com/Qacket/MLFFM-SegDiff.git after publication.
Jun 19, 2026

EnTrust: Modeling Inter-Modal Conflict for Trustworthy Multimodal Medical Image Analysis

Multimodal medical imaging fuses complementary anatomical and functional information, yet modalities frequently disagree in pathologically heterogeneous regions. Current segmentation models handle this in one of two inadequate ways: deterministic fusion that averages away disagreement, or post-hoc uncertainty estimation decoupled from the fusion process that produces it. Both obscure the clinically critical question: why is this prediction unreliable? We present EnTrust, a framework that treats inter-modal conflict as the primary source of predictive uncertainty. Our EnFuse module decomposes multimodal features into three disentangled components: shared anatomical consensus (F_c), modality-specific cues (F_{u,m}), and spatially localized conflict signals (F_{cf}), with independence enforced via a cross-covariance objective. This structured decomposition conditions SegDiff, a diffusion-based generative segmentation model whose sampled hypotheses diverge specifically in regions of modal disagreement. TrustMap then translates this hypothesis divergence into calibrated, pixel-wise uncertainty using ensemble entropy, conflict-guided perturbation probing, and a learned calibration head, enabling clinicians to understand not only where predictions are uncertain, but why. Across four benchmarks spanning brain, cardiac, lesion, and oncology domains, EnTrust achieves state-of-the-art segmentation accuracy while reducing calibration error by 40% compared to the strongest baseline. Notably, it outperforms 5x deep ensembles using a single model at roughly half the memory footprint. Code and checkpoints are available at https://github.com/GenMI-Lab/EnTrust.git.
Jun 12, 2026

Diffusion-Refined Segmentation and Vision-Language Interpretation for Pediatric Brain Tumor MRI

Accurate pediatric brain tumor segmentation remains challenging due to limited annotated data, heterogeneous imaging phenotypes, diffuse tumor boundaries, and class imbalance across tumor subregions. Here, we present a two-stage deep learning framework for improving multi-modal pediatric brain MRI segmentation and clinical interpretation. First, we evaluate 3D Res U-Net and Swin-UNETR baselines on BraTS-PEDs MRI scans, using four co-registered modalities to predict tumor core, whole tumor, and enhancing tumor regions. Second, we introduce diffusion-based refinement models conditioned on coarse Swin-UNETR predictions, including a 3D DDPM refiner and MedSegDiff. Conditioning substantially improves diffusion stability and performance, particularly for enhancing tumor boundary segmentation. Conditioned MedSegDiff achieves the strongest boundary agreement with the lowest HD95. Finally, predicted tumor volumes and representative segmentation overlays are integrated with a multimodal language model to generate structured radiology-style reports. Together, our results suggest that coarse-to-refined diffusion segmentation can improve pediatric tumor boundary delineation and support end-to-end interpretable AI-assisted neuro-oncology workflows.
May 12, 2026

DiffSegLung: Diffusion Radiomic Distillation for Unsupervised Lung Pathology Segmentation

Unsupervised segmentation of pulmonary pathologies in CT remains an open challenge due to the absence of annotated multi pathology cohorts and the failure of existing diffusion-based methods to exploit the quantitative Hounsfield Unit (HU) signal that physically distinguishes tissue classes. To address this, we propose DiffSegLung,a framework that introduces Diffusion Radiomic Distillation, in which handcrafted radiomic descriptors serve as a physics grounded teacher to shape the bottleneck of a 3D diffusion U-Net via a contrastive objective, transferring pathology discriminative structure into the learned representation without any annotations. At inference, the teacher is discarded and multitimestep bottleneck features are clustered by a Gaussian Mixture Model with HU-guided label assignment, followed by Sobel Diffusion Fusion for boundary refinement. Evaluated on 190 expert annotated axial slices drawn from four heterogeneous CT cohorts, Diff-SegLung improves segmentation across all four pathology classes over unsupervised baselines and improves generation fidelity over prior CT diffusion models.
May 11, 2026

GenMed: A Pairwise Generative Reformulation of Medical Diagnostic Tasks

Data-driven medical AI is traditionally formulated as a discriminative mapping from input XX to output YY via a learned function ff, which does not generalize well across heterogeneous data and modalities encountered in real-world clinical settings. In this work, we propose a fundamentally different, generative paradigm. We model the joint distribution P(X,Y)P(X,Y) using diffusion models and reframe inference as a test-time output optimization problem. By guiding the generative process to match observed inputs, our framework enables flexible, gradient-based conditioning at inference time without architectural changes or retraining, effectively supporting arbitrary and previously unseen combinations of observations. Extensive experiments demonstrate strong performance across standard and cross-modality medical image segmentation, few-shot segmentation with only 2 or 4 training samples, degraded-input segmentation, shape completion from sparse and partial observations, and zero-shot application to demonstrate generality. To support these evaluations, we curated and released a large-scale text-shape dataset derived from MedShapeNet. Our results highlight the versatility of generative joint modeling as a foundation for reusable, task-agnostic medical AI systems.
Apr 27, 2026

DiffuSAM: Diffusion-Based Prompt-Free SAM2 for Few-Shot and Source-Free Medical Image Segmentation

Segmentation models such as Segment Anything Model (SAM) and SAM2 achieve strong prompt-driven zero-shot performance. However, their training on natural images limits domain transfer to medical data. Consequently, accurate segmentation typically requires extensive fine-tuning and expert-designed prompts. We propose DiffuSAM, a diffusion-based adaptation of SAM2 for prompt-free medical image segmentation. Our framework synthesizes SAM2-compatible segmentation mask-like embeddings via a lightweight diffusion-prior from off-the-shelf frozen SAM2 image features. The generated embeddings are integrated into SAM2's mask decoder to produce accurate segmentations, thereby eliminating the need for user prompts. The diffusion prior is further conditioned on previously segmented slices, enforcing spatial consistency across volumes. Evaluated on the BTCV and CHAOS datasets for CT and MRI under Source-Free Unsupervised Domain Adaptation (SF-UDA) and Few-Shot settings, DiffuSAM achieves competitive performance with efficient training and inference. Code is available upon request from the corresponding author.
Apr 3, 2026

SD-FSMIS: Adapting Stable Diffusion for Few-Shot Medical Image Segmentation

Few-Shot Medical Image Segmentation (FSMIS) aims to segment novel object classes in medical images using only minimal annotated examples, addressing the critical challenges of data scarcity and domain shifts prevalent in medical imaging. While Diffusion Models (DM) excel in visual tasks, their potential for FSMIS remains largely unexplored. We propose that the rich visual priors learned by large-scale DMs offer a powerful foundation for a more robust and data-efficient segmentation approach. In this paper, we introduce SD-FSMIS, a novel framework designed to effectively adapt the powerful pre-trained Stable Diffusion (SD) model for the FSMIS task. Our approach repurposes its conditional generative architecture by introducing two key components: a Support-Query Interaction (SQI) and a Visual-to-Textual Condition Translator (VTCT). Specifically, SQI provides a straightforward yet powerful means of adapting SD to the FSMIS paradigm. The VTCT module translates visual cues from the support set into an implicit textual embedding that guides the diffusion model, enabling precise conditioning of the generation process. Extensive experiments demonstrate that SD-FSMIS achieves competitive results compared to state-of-the-art methods in standard settings. Surprisingly, it also demonstrated excellent generalization ability in more challenging cross-domain scenarios. These findings highlight the immense potential of adapting large-scale generative models to advance data-efficient and robust medical image segmentation.
Mar 9, 2026

Structure and Progress Aware Diffusion for Medical Image Segmentation

Medical image segmentation is crucial for computer-aided diagnosis, which necessitates understanding both coarse morphological and semantic structures, as well as carving fine boundaries. The morphological and semantic structures in medical images are beneficial and stable clues for target understanding. While the fine boundaries of medical targets (like tumors and lesions) are usually ambiguous and noisy since lesion overlap, annotation uncertainty, and so on, making it not reliable to serve as early supervision. However, existing methods simultaneously learn coarse structures and fine boundaries throughout the training process. In this paper, we propose a structure and progress-aware diffusion (SPAD) for medical image segmentation, which consists of a semantic-concentrated diffusion (ScD) and a boundary-centralized diffusion (BcD) modulated by a progress-aware scheduler (PaS). Specifically, the semantic-concentrated diffusion introduces anchor-preserved target perturbation, which perturbs pixels within a medical target but preserves unaltered areas as semantic anchors, encouraging the model to infer noisy target areas from the surrounding semantic context. The boundary-centralized diffusion introduces progress-aware boundary noise, which blurs unreliable and ambiguous boundaries, thus compelling the model to focus on coarse but stable anatomical morphology and global semantics. Furthermore, the progress-aware scheduler gradually modulates noise intensity of the ScD and BcD forming a coarse-to-fine diffusion paradigm, which encourage focusing on coarse morphological and semantic structures during early target understanding stages and gradually shifting to fine target boundaries during later contour adjusting stages.
Mar 4, 2026

Volumetric Directional Diffusion: Anchoring Uncertainty Quantification in Anatomical Consensus for Ambiguous Medical Image Segmentation

Ambiguous 3D medical image segmentation often involves boundaries where different expert delineations are non-identical yet clinically plausible. Modeling such inter-observer variability requires a careful balance between diversity and anatomical fidelity: deterministic models preserve coherent volumetric structures but collapse expert disagreement into a single mask, while stochastic generative models can produce diverse samples but may introduce disconnected components or slice-to-slice inconsistency when generating full 3D masks from unstructured noise. We propose Volumetric Directional Diffusion (VDD), a prior-anchored diffusion framework that shifts stochastic generation from full-mask synthesis to residual boundary exploration. VDD uses a coarse consensus prediction as an anatomical anchor and learns a directional diffusion process to generate plausible boundary variations around ambiguous regions while preserving stable volumetric topology. Experiments on three multi-rater datasets, including LIDC-IDRI, KiTS21, and ISBI 2015, show that VDD improves uncertainty distribution alignment while maintaining competitive segmentation accuracy and 3D structural consistency. These results suggest that prior-anchored residual diffusion can model clinically plausible expert disagreement without sacrificing anatomical fidelity.
Feb 24, 2026

OrthoDiffusion: A Generalizable Multi-Task Diffusion Foundation Model for Musculoskeletal MRI Interpretation

Musculoskeletal disorders represent a significant global health burden and are a leading cause of disability worldwide. While MRI is essential for accurate diagnosis, its interpretation remains exceptionally challenging. Radiologists must identify multiple potential abnormalities within complex anatomical structures across different imaging planes, a process that requires significant expertise and is prone to variability. We developed OrthoDiffusion, a unified diffusion-based foundation model designed for multi-task musculoskeletal MRI interpretation. The framework utilizes three orientation-specific 3D diffusion models, pre-trained in a self-supervised manner on 15,948 unlabeled knee MRI scans, to learn robust anatomical features from sagittal, coronal, and axial views. These view-specific representations are integrated to support diverse clinical tasks, including anatomical segmentation and multi-label diagnosis. Our evaluation demonstrates that OrthoDiffusion achieves excellent performance in the segmentation of 11 knee structures and the detection of 8 knee abnormalities. The model exhibited remarkable robustness across different clinical centers and MRI field strengths, consistently outperforming traditional supervised models. Notably, in settings where labeled data was scarce, OrthoDiffusion maintained high diagnostic precision using only 10% of training labels. Furthermore, the anatomical representations learned from knee imaging proved highly transferable to other joints, achieving strong diagnostic performance across 11 diseases of the ankle and shoulder. These findings suggest that diffusion-based foundation models can serve as a unified platform for multi-disease diagnosis and anatomical segmentation, potentially improving the efficiency and accuracy of musculoskeletal MRI interpretation in real-world clinical workflows.
Dec 1, 2025

Diffusion Model in Latent Space for Medical Image Segmentation Task

Medical image segmentation is crucial for clinical diagnosis and treatment planning. Traditional methods typically produce a single segmentation mask, failing to capture inherent uncertainty. Recent generative models enable the creation of multiple plausible masks per image, mimicking the collaborative interpretation of several clinicians. However, these approaches remain computationally heavy. We propose MedSegLatDiff, a diffusion based framework that combines a variational autoencoder (VAE) with a latent diffusion model for efficient medical image segmentation. The VAE compresses the input into a low dimensional latent space, reducing noise and accelerating training, while the diffusion process operates directly in this compact representation. We further replace the conventional MSE loss with weighted cross entropy in the VAE mask reconstruction path to better preserve tiny structures such as small nodules. MedSegLatDiff is evaluated on ISIC-2018 (skin lesions), CVC-Clinic (polyps), and LIDC-IDRI (lung nodules). It achieves state of the art or highly competitive Dice and IoU scores while simultaneously generating diverse segmentation hypotheses and confidence maps. This provides enhanced interpretability and reliability compared to deterministic baselines, making the model particularly suitable for clinical deployment.
Sep 26, 2025

Multi-Channel Uncertainty-Weighted Score Matching for Conditional Diffusion in Medical UDA

Robust medical image segmentation across modalities remains challenging due to severe domain shifts and the lack of target-domain labels. While diffusion models have been explored for cross-domain generation and augmentation, target-domain conditional diffusion training typically relies on highly noisy pseudo masks; naively conditioning on a single Arg-Max pseudo-label can corrupt diffusion training and downstream segmentation. We propose UPDiff-UDA, a unified UDA framework whose core is an uncertainty-guided training objective for target-domain conditional diffusion. Given an imperfect source-trained segmenter, we use its per-pixel softmax distribution to form ranked pseudo-label maps (Arg-Max, Arg-2nd, Arg-3rd, ...). Each map yields a conditional score estimate, and we aggregate them via pixel-wise confidence weighting to obtain an uncertainty-reweighted score for score matching, improving robustness to pseudo-label noise while leveraging alternative plausible labels in uncertain regions. We further provide a theoretical justification showing that confidence-weighted aggregation follows a minimum-MSE convex-combination principle under the segmenter-induced surrogate label distribution. To improve pseudo-condition quality, we also introduce a feature-guided, low-degree-of-freedom Bézier curve adaptation to reduce appearance gaps. Experiments on multiple public datasets and modality shifts show that UPDiff-UDA generates high-fidelity labeled target-style samples for augmentation and consistently outperforms strong UDA baselines. The code for this project is available at: https://github.com/superlc1995/Multi-Channel-Uncertainty-Diffusion-UDA
Apr 2, 2025

Semi-Supervised Biomedical Image Segmentation via Diffusion Models and Teacher-Student Co-Training

Supervised deep learning achieves strong performance in biomedical image segmentation but relies on costly pixel-wise annotations, motivating semi-supervised approaches that exploit unlabeled data. We introduce a diffusion-based teacher--student framework in which segmentation predictions are used to condition image denoising, encouraging the production of more informative pseudo-labels. The teacher is first pretrained through an unsupervised reconstruction task using diffusion-style corruption, timestep conditioning, and denoising. Starting from a corrupted empty mask, the model predicts an intermediate segmentation that conditions image denoising, encouraging the predicted mask to capture structural information useful for recovering the original image. The resulting teacher is then co-trained with a student using supervised segmentation on labeled samples and cross pseudo-supervision on unlabeled data. We further introduce a multi-round extension during co-training, in which the teacher generates multiple stochastic image reconstructions and corresponding segmentation predictions, providing additional reconstruction and alignment signals to improve its pseudo-labels. We evaluate the proposed framework on three public 2D biomedical segmentation datasets and a 3D left atrial segmentation benchmark. Across several labeling regimes, our method achieves competitive or superior performance compared with state-of-the-art semi-supervised approaches, with the largest gains observed under severe label scarcity.