Electroencephalography

Medical time series, such as electrocardiograms (ECG) and electroencephalograms (EEG), exhibit complex temporal dynamics and structured cross-channel dependencies, posing fundamental challenges for automated analysis. Conventional convolutional and recurrent models struggle to capture long-range dependencies, while Transformer-based approaches incur quadratic complexity and often introduce redundant interactions that are misaligned with the intrinsic structure of physiological signals. To address these limitations, we propose MedMamba, a principle-driven multi-scale bidirectional state space architecture tailored for medical time series classification. Our design is guided by three key inductive biases of physiological signals: spatial centralization, multi-timescale temporal composition, and non-causal contextual dependency. These principles are instantiated through a lightweight channel-mixing module for cross-channel reparameterization, multi-scale convolutional tokenization for temporal decomposition, and bidirectional Mamba blocks for efficient global context modeling with linear complexity. Extensive experiments on six benchmark datasets spanning EEG, ECG, and human activity signals demonstrate that MedMamba consistently outperforms state-of-the-art methods across diverse modalities. Notably, it achieves 85.97% accuracy on PTB and establishes new state-of-the-art performance on the challenging ADFTD dataset (54.72% accuracy and 52.01% F1-score). Strong results on long-sequence benchmarks, such as SleepEDF, further validate its capability in modeling long-range dependencies. Moreover, MedMamba achieves a speedup of 4.6x in inference, highlighting its practicality for real-time clinical deployment. These results suggest that principle-guided state space modeling offers an effective and scalable alternative to Transformer-based approaches for medical time series analysis.

MLE-Toolbox is a comprehensive open-source MATLAB toolbox for end-to-end analysis of magnetoencephalography (MEG) and electroencephalography (EEG) data. Inspired by widely used neuroimaging platforms such as Brainstorm and FieldTrip, it integrates the full analysis pipeline within a unified and user-friendly graphical interface (GUI), covering raw data import, preprocessing, source localization, functional connectivity, oscillatory analysis, and machine learning-based classification. The toolbox includes automated artifact rejection methods, including independent component analysis (ICA), signal-space projection (SSP), and signal-space separation (SSS); multiple source localization approaches, including minimum norm estimation (MNE), dynamic statistical parametric mapping (dSPM), standardized low-resolution brain electromagnetic tomography (sLORETA), and beamforming; multi-atlas parcellation with anatomical visualization; spectral power analysis with frequency-band brain mapping; phase-amplitude coupling (PAC); graph-theoretic brain network analysis; and integrated machine learning and deep learning classifiers. MLE-Toolbox also provides native interoperability with Brainstorm, FieldTrip, EEGLAB, and FreeSurfer, allowing researchers to build on established workflows while benefiting from additional automation, interactive visualization, and one-click academic report generation. Freely available for non-commercial use, MLE-Toolbox is designed to lower the barrier to rigorous, reproducible MEG/EEG research.

In this paper, we consider applying computer vision algorithms for the classification problem one faces in neuroscience during EEG data analysis. Our approach is to apply a combination of computer vision and neural network methods to solve human brain activity classification problems during hand movement. We pre-processed raw EEG signals and generated 2D EEG topograms. Later, we developed supervised and semi-supervised neural networks to classify different motor cortex activities.

Electroencephalography (EEG) has become one of the key modalities underpinning brain-computer interfaces (BCIs) due to its high temporal resolution, rapid responsiveness, non-invasiveness, low cost, and portability. However, EEG signals are substantially inferior to intracranial EEG (iEEG) in signal-to-noise ratio and local spatial resolution, whereas iEEG suffers from extremely limited clinical accessibility owing to its invasive nature, hindering widespread application. To address this challenge, this study proposes a unified data-and prior knowledge-driven framework for EEG-iEEG representational enhancement. Guided by the principle that "geometric structure dictates function", the framework maps static cortical anatomy onto dynamic constraints governing neural signal propagation and integrates general-purpose neural representations extracted by a pre-trained large EEG model to explicitly model signal transmission through the brain. Enhanced EEG signals are then synthesized via a multidimensional representation diffusion process. Numerous experimental results demonstrate that the generated enhanced EEG signals effectively recover the neural activity patterns lost during propagation through the brain. This finding indicates that the performance ceiling of BCIs is constrained not only by acquisition hardware but also by the depth to which the generative model resolves the mechanisms of neural signal propagation. Collectively, the proposed framework provides a viable pathway toward acquiring high-fidelity neural signals at low cost.

Epileptic seizures are neurological disorders characterized by abnormal and excessive electrical activity in the brain, resulting in recurrent seizure events. Electroencephalogram (EEG) signals are widely used for seizure diagnosis due to their ability to capture temporal and spatial neural dynamics. While recent deep learning methods have achieved high detection accuracy, they often lack interpretability and neurophysiological relevance. This study presents a frequency-aware framework for epileptic seizure detection based on ictal-phase EEG analysis. The raw EEG signals are decomposed into five frequency bands (delta, theta, alpha, lower beta, and higher beta), and eleven discriminative features are extracted from each band. A graph convolutional neural network (GCN) is then employed to model spatial dependencies among EEG electrodes, represented as graph nodes. Experiments on the CHB-MIT scalp EEG dataset demonstrate high detection performance, achieving accuracies of 97.1%, 97.13%, 99.5%, 99.7%, and 51.4% across the respective frequency bands, with an overall broadband accuracy of 99.01%. The results highlight the strong discriminative capability of mid-frequency bands and reveal frequency-specific seizure patterns. The proposed approach improves interpretability and diagnostic precision compared to conventional broadband EEG-based methods.

Brain-computer interfaces (BCIs) have opened new platforms for human-computer interaction, medical diagnostics, and neurorehabilitation. Wearable BCI systems, which typically employ non-invasive electrodes for portable monitoring, hold great promise for real-world applications, but also face significant challenges of signal quality degradation caused by motion artifacts and environmental interferences. Most existing wearable BCI datasets are collected under stationary or controlled lab settings, limiting their utility for evaluating performance under body movement. To bridge this gap, we introduce WearBCI, the first dataset that comprehensively evaluates wearable BCI signals under different motion dynamics with synchronized multimodal recordings (EEG, IMU, and egocentric video), and systematic benchmark evaluations for studying impacts of motion artifact. Specifically, we collect data from 36 participants across different motion dynamics, including body movements, walking, and navigation. This dataset includes synchronized electroencephalography (EEG), inertial measurement unit (IMU) data, and egocentric video recordings. We analyze the collected wearable EEG signals to understand the impact of motion artifacts across different conditions, and benchmark representative EEG signal enhancement techniques on our dataset. Furthermore, we explore two new case studies: cross-modal EEG signal enhancement and multi-dimension human behavior understanding. These findings offer valuable insights into real-world wearable BCI deployment and new applications.

Epileptic seizure prediction from electroencephalographic (EEG) recordings remains challenging due to strong inter-patient variability and the complex temporal structure of neural signals. This paper presents a patient-adaptive transformer framework for short-horizon seizure forecasting. The proposed approach employs a two-stage training strategy: self-supervised pretraining is first used to learn general EEG temporal representations through autoregressive sequence modeling, followed by patient-specific fine-tuning for binary prediction of seizure onset within a 30-second horizon. To enable transformer-based sequence learning, multichannel EEG signals are processed using noise-aware preprocessing and discretized into tokenized temporal sequences. Experiments conducted on subjects from the TUH EEG dataset demonstrate that the proposed method achieves validation accuracies above 90% and F1 scores exceeding 0.80 across evaluated patients, supporting the effectiveness of combining self-supervised representation learning with patient-specific adaptation for individualized seizure prediction.

Deep learning models have shown promise in EEG-based outcome prediction for comatose patients after cardiac arrest, but their reliability is often compromised by subtle forms of data leakage. In particular, when long EEG recordings are segmented into short windows and reused across multiple training stages, models may implicitly encode and propagate label information, leading to overly optimistic validation performance and poor generalization. In this study, we identify a previously overlooked form of data leakage in multi-stage EEG modeling pipelines. We demonstrate that violating strict patient-level separation can significantly inflate validation metrics while causing substantial degradation on independent test data. To address this issue, we propose a leakage-aware two-stage framework. In the first stage, short EEG segments are transformed into embedding representations using a convolutional neural network with an ArcFace objective. In the second stage, a Transformer-based model aggregates these embeddings to produce patient-level predictions, with strict isolation between training cohorts to eliminate leakage pathways. Experiments on a large-scale EEG dataset of post-cardiac-arrest patients show that the proposed framework achieves stable and generalizable performance under clinically relevant constraints, particularly in maintaining high sensitivity at stringent specificity thresholds. These results highlight the importance of rigorous data partitioning and provide a practical solution for reliable EEG-based outcome prediction.

Electroencephalography (EEG) enables non-invasive monitoring of brain activity across clinical and neurotechnology applications, yet building foundation models for EEG remains challenging due to differing electrode topologies and computational scalability, as Transformer architectures incur quadratic sequence complexity. As a joint solution, we propose LuMamba (Latent Unified Mamba), a self-supervised framework combining topology-invariant encodings with linear-complexity state-space modeling, using LUNA's learned-query cross-attention mechanism for channel unification, and FEMBA's bidirectional Mamba blocks for efficient temporal modeling. Within this architecture, we provide the first systematic investigation of the Latent-Euclidean Joint-Embedding Predictive Architecture (LeJEPA) for biosignal learning. Pre-trained on over 21,000 hours of unlabeled EEG from the TUEG corpus, LuMamba is evaluated on five downstream tasks spanning abnormality detection, artifact recognition, and mental condition classification across electrode configurations ranging from 16 to 26 channels. In the pre-training objective, masked reconstruction alone yields structured but less generalizable representations, while LeJEPA alone produces diffuse embeddings; combining both objectives achieves the most robust performance. With only 4.6M parameters, LuMamba attains 80.99% balanced accuracy on TUAB and achieves state-of-art performance on Alzheimer's detection (0.97 AUPR), while requiring 377x fewer FLOPS than state-of-art models at equivalent sequence lengths and scaling to 12x longer sequences before reaching typical GPU memory limits. Code is available at https://github.com/pulp-bio/biofoundation.

Robot-assisted therapy can deliver high-dose, task-specific training after neurologic injury, but most systems act primarily at the limb level-engaging the impaired neural circuits only indirectly-which remains a key barrier to truly contingent, neuroplasticity-targeted rehabilitation. We address this gap by implementing online, dual-state motor imagery control of an upper-limb exoskeleton, enabling goal-directed reaches to be both initiated and terminated directly from non-invasive EEG. Eight participants used EEG to initiate assistance and then volitionally halt the robot mid-trajectory. Across two online sessions, group-mean hit rates were 61.5% for onset and 64.5% for offset, demonstrating reliable start-stop command delivery despite instrumental noise and passive arm motion. Methodologically, we reveal a systematic, class-driven bias induced by common task-based recentering using an asymmetric margin diagnostic, and we introduce a class-agnostic fixation-based recentering method that tracks drift without sampling command classes while preserving class geometry. This substantially improves threshold-free separability (AUC gains: onset +56%, p = 0.0117; offset +34%, p = 0.0251) and reduces bias within and across days. Together, these results help bridge offline decoding and practical, intention-driven start-stop control of a rehabilitation exoskeleton, enabling precisely timed, contingent assistance aligned with neuroplasticity goals while supporting future clinical translation.

Response variability limits the clinical utility of transcutaneous auricular vagus nerve stimulation (taVNS) for negative symptoms in treatment-resistant schizophrenia (TRS). This study aimed to develop an electroencephalography (EEG)-based machine learning (ML) model to predict individual response and explore associated neurophysiological mechanisms. We used ML to develop and validate predictive models based on pre-treatment EEG data features (power, coherence, and dynamic functional connectivity) from 50 TRS patients enrolled in the taVNS trial, within a nested cross-validation framework. Participants received 20 sessions of active or sham taVNS (n = 25 each) over two weeks, followed by a two-week follow-up. The prediction target was the percentage change in the positive and negative syndrome scale-factor score for negative symptoms (PANSS-FSNS) from baseline to post-treatment, with further evaluation of model specificity and neurophysiological relevance.The optimal model accurately predicted taVNS response in the active group, with predicted PANSS-FSNS changes strongly correlated with observed changes (r = 0.87, p < .001); permutation testing confirmed performance above chance (p < .001). Nine consistently retained features were identified, predominantly fronto-parietal and fronto-temporal coherence features. Negligible predictive performance in the sham group and failure to predict positive symptom change support the predictive specificity of this oscillatory signature for taVNS-related negative symptom improvement. Two coherence features within fronto-parietal-temporal networks showed post-taVNS changes significantly associated with symptom improvement, suggesting dual roles as predictors and potential therapeutic targets. EEG oscillatory neuromarkers enable accurate prediction of individual taVNS response in TRS, supporting mechanism-informed precision neuromodulation strategies.

Deep learning has achieved transformative performance across diverse domains, largely driven by large-scale and high-quality training data. In contrast, the development of brain-computer interfaces (BCIs) is fundamentally constrained by limited, heterogeneous, and privacy-sensitive neural recordings. Generating synthetic yet physiologically plausible brain signals has therefore emerged as a promising strategy to mitigate data scarcity, improve model generalization, and support data-efficient BCIs. This survey provides a comprehensive review of synthetic brain data generation for BCIs, covering methodological taxonomies, benchmark experiments, evaluation metrics, key applications, and future directions. We systematically categorize existing generation approaches into four types: signal-transformation-based, feature-based, model-based, and translation-based generation, and discuss their characteristics, advantages, and limitations. Furthermore, we benchmark representative brain signal generation approaches across four BCI paradigms, including motor imagery, epileptic seizure detection, steady-state visually evoked potentials, and auditory attention detection, to provide an objective comparison of their downstream utility. We also summarize evaluation principles for generated brain signals from multiple perspectives, including signal realism, physiological plausibility, downstream utility, and privacy preservation. Finally, we discuss the potential and challenges of current generation approaches and outline future research directions toward accurate, data-efficient, generalizable, and privacy-aware BCI systems. The benchmark codebase is available at https://github.com/wzwvv/DG4BCI.

Reliable detection of event-related potentials (ERPs) at the single-trial level remains a major challenge due to the low signal-to-noise ratio EEG recordings. In this work, we investigate whether incorporating prior knowledge about ERP templates into deep learning models can improve detection performance. We employ the Deep-Match framework for ERP detection using multi-channel EEG signals. The model is trained in two stages. First, an encoder-decoder architecture is trained to reconstruct input EEG signals, enabling the network to learn compact signal representations. In the second stage, the decoder is replaced with a detection module, and the network is fine-tuned for ERP identification. Two model variants are evaluated: a standard model with randomly initialized filters and a Deep-MF model in which input kernels are initialized using ERP templates. Model performance is assessed on a single-trial ERP detection task using leave-one-subject-out validation. The proposed Deep-MF model slightly outperforms the detector with standard kernel initialization for most held-out subjects. Despite substantial inter-subject variability, Deep-MF achieves a higher average F1-score (0.37) compared to the standard network (0.34), indicating improved robustness to cross-subject differences. The best performance obtained by Deep-MF reaches an F1-score of 0.71, exceeding the maximum score achieved by the standard model (0.59). These results demonstrate that ERP-informed kernel initialization can provide consistent improvements in subject-independent single-trial ERP detection. Overall, the findings highlight the potential of integrating domain knowledge with deep learning architectures for EEG analysis. The proposed approach represents a step toward practical wearable EEG and passive brain-computer interface systems capable of real-time monitoring of cognitive processes.

Electroencephalogram (EEG) classification plays a key role in medical diagnosis and brain-computer interfaces, but remains challenging due to low signal-to-noise ratios and high inter-subject variability. As a result, many existing approaches rely on subject-specific models, which fail to exploit shared structure in neural signals and do not generalize to unseen subjects. To address these limitations, we propose LAtte, a framework that combines Lorentz attention with a hyperbolic InceptionTime-based encoder to improve cross-subject generalization in EEG classification. The model explicitly decomposes EEG signals into a learned baseline component and task-relevant deviations, enabling more structured representation learning. To further improve robustness and adaptability, we incorporate subject-specific low-rank adaptation (LoRA) modules at both encoder and decoder levels, augmented with a Lorentz boost-based LoRA mechanism and hyperbolic projection layers to reduce overfitting in geometric representations. We evaluate LAtte with and without finetuning in three settings: subject-specific, subject-conditional, and leave-one-subject-out (LOSO) on five established EEG datasets, achieving a consistent improvement in performance over current state-of-the-art methods for smaller datasets and maintaining performance for larger datasets.

Electroencephalography (EEG)-based emotion recognition remains challenging in cross-subject settings due to severe inter-subject variability. Existing methods mainly learn subject-invariant features, but often under-exploit stimulus-locked group regularities shared across subjects. To address this issue, we propose the Group Resonance Network (GRN), which integrates individual EEG dynamics with offline group resonance modeling. GRN contains three components: an individual encoder for band-wise EEG features, a set of learnable group prototypes for prototype-induced resonance, and a multi-subject resonance branch that encodes PLV/coherence-based synchrony with a small reference set. A resonance-aware fusion module combines individual and group-level representations for final classification. Experiments on SEED and DEAP under both subject-dependent and leave-one-subject-out protocols show that GRN consistently outperforms competitive baselines, while additional analyses confirm the effects of prototype learning, PLV/coherence resonance, and leakage-safe reference construction.

This paper addresses the challenge of generating synthetic electroencephalogram (EEG) covariance matrices for motor imagery brain-computer interface (MI-BCI) applications. Objective: We aim to develop a generative model capable of producing high-fidelity synthetic covariance matrices while preserving their symmetric positive-definite nature. Approach: We propose a Riemannian geometry-preserving variational autoencoder (RGP-VAE) integrating geometric mappings with a composite loss function combining Riemannian distance, tangent space reconstruction accuracy and generative diversity. Results: The model generates valid, representative EEG covariance matrices, while learning a subject-invariant latent space. Synthetic data proves practically useful for MI-BCI, with its impact depending on the paired classifier. Contribution: This work introduces and validates the RGP-VAE as a geometry-preserving generative model for EEG covariance matrices, highlighting its potential for signal privacy, scalability and data augmentation.

Human-vehicle interaction in safety-critical traffic environments increasingly incorporates neural sensing to infer user intent and cognitive state, yet most existing approaches either treat electroencephalography (EEG) as a static biometric credential or train task-specific decoders that ignore long-term neurodynamic trajectories, lacking mechanisms for secure user identity and continual modeling of evolving cognitive states. This work proposes a self-supervised evolutionary learning (SSEL) framework that discovers individualized neurodynamic progressions and intrinsic identity manifolds directly from continuous EEG, without external labels or predefined cognitive stage models. SSEL jointly optimizes within-stage temporal predictability, boundary contrast, cross-trial alignment, and sparse stage-specific feature weights, while a population-based evolutionary search enables direct optimization in the discrete, non-differentiable space of candidate segmentations. We validate the framework on EEG recorded from participants performing a simulated road-crossing decision task, a canonical safety-critical scenario in which perceptual assessment, risk evaluation, and decision commitment unfold over time. The learned segmentations reveal stable, person-specific stage structures and neurodynamic signatures that support authentication and anomaly detection. Compared to inference-based segmentation baselines, SSEL achieves orders-of-magnitude higher boundary contrast, substantial gains in cross-trial generalization of intention boundaries, and more interpretable, sparse stage-wise feature attributions. Beyond performance, the framework advances a progression-aware perspective on cognitive neurodynamics, where security, resilience, and personalization emerge from the intrinsic temporal structure of brain activity, with implications for next-generation smart urban and transportation infrastructures.

We propose a novel computational framework for analyzing electroencephalography (EEG) time series using methods from stringology, the study of efficient algorithms for string processing, to systematically identify and characterize recurrent temporal patterns in neural signals. The primary aim is to introduce quantitative measures to understand neural signal dynamics, with the present findings serving as a proof-of-concept. The framework adapts order-preserving matching (OPM) and Cartesian tree matching (CTM) to detect temporal motifs that preserve relative ordering and hierarchical structure while remaining invariant to amplitude scaling. This approach provides a temporally precise representation of EEG dynamics that complements traditional spectral and global complexity analyses. To evaluate its utility, we applied the framework to multichannel EEG recordings from individuals with attention-deficit/hyperactivity disorder (ADHD) and matched controls using a publicly available dataset. Highly recurrent, group-specific motifs were extracted and quantified using both OPM and CTM. The ADHD group exhibited significantly higher motif frequencies, suggesting increased repetitiveness in neural activity. OPM analysis revealed shorter motif lengths and greater gradient instability in ADHD, reflected in larger mean and maximal inter-sample amplitude changes. CTM analysis further demonstrated reduced hierarchical complexity in ADHD, characterized by shallower tree structures and fewer hierarchical levels despite comparable motif lengths. These findings suggest that ADHD-related EEG alterations involve systematic differences in the structure, stability, and hierarchical organization of recurrent temporal patterns. The proposed stringology-based motif framework provides a complementary computational tool with potential applications for objective biomarker development in neurodevelopmental disorders.

Robust and interpretable dementia diagnosis from noisy, non-stationary electroencephalography (EEG) is clinically essential yet remains challenging. To this end, we propose SeeGraph, a Sparse-Explanatory dynamic EEG-graph network that models time-evolving functional connectivity and employs a node-guided sparse edge mask to reveal the connections that drive diagnostic decisions, while remaining robust to noise and cross-site variability. SeeGraph comprises four components: (1) a dual-trajectory temporal encoder that models dynamic EEG with two streams, where node signals capture regional oscillations and edge signals capture interregional coupling; (2) a topology-aware positional encoder that derives graph-spectral Laplacian coordinates from the fused connectivity and augments node embeddings; (3) a node-guided sparse explanatory edge mask that gates the connectivity into a compact subgraph; and (4) a gated graph predictor that operates on the sparsified graph. The framework is trained using cross-entropy loss together with a sparsity regularizer on the mask, yielding noise-robust and interpretable diagnoses. The effectiveness of SeeGraph is validated on public and in-house EEG cohorts, including patients with neurodegenerative dementias and healthy controls, under both raw and noise-perturbed conditions. Its sparse, node-guided explanations highlight disease-relevant connections and align with established clinical findings on functional connectivity alterations, thereby offering transparent cues for neurological evaluation.

How natural speech is represented in the brain constitutes a major challenge for cognitive neuroscience. Reconstructing the speech envelope and Mel spectrogram from EEG and MEG provides a time-resolved way to study its temporal and spectral structure. Speech-related neural activity spans sensors and temporal scales; extracting these representations while adapting the use of context to each acoustic target is a central problem in speech reconstruction. We propose SHINE, a Sequential Hierarchical Integration Network for EEG and MEG. A residual sensor adapter unifies input dimensions, intermediate dilated-block states retain temporal depth, and a target- and time-dependent gate fuses local hierarchical and attention-enhanced context predictions. Across two EEG and two MEG datasets, SHINE has the highest mean envelope and mean-Mel Pearson correlations among nine local baseline implementations on all eight dataset-metric combinations. SHINE also placed second in the speech-detection Extended Track of the NeurIPS 2025 PNPL Competition. Code will be released at https://github.com/xuxiran/SHINE.

Although obtaining deep brain activity from non-invasive scalp electroencephalography (sEEG) is crucial for neuroscience and clinical diagnosis, directly generating high-fidelity intracranial electroencephalography (iEEG) signals remains a largely unexplored field, limiting our understanding of deep brain dynamics. Current research primarily focuses on traditional signal processing or source localization methods, which struggle to capture the complex waveforms and random characteristics of iEEG. To address this critical challenge, this paper introduces NeuroFlowNet, a novel cross-modal generative framework whose core contribution lies in the first-ever reconstruction of iEEG signals from the entire deep temporal lobe region using sEEG signals. NeuroFlowNet is built on Conditional Normalizing Flow (CNF), which directly models complex conditional probability distributions through reversible transformations, thereby explicitly capturing the randomness of brain signals and fundamentally avoiding the pattern collapse issues common in existing generative models. Additionally, the model integrates a multi-scale architecture and self-attention mechanisms to robustly capture fine-grained temporal details and long-range dependencies. Validation results on a publicly available synchronized sEEG-iEEG dataset demonstrate NeuroFlowNet's effectiveness in terms of temporal waveform fidelity, spectral feature reproduction, and functional connectivity restoration. This study establishes a more reliable and scalable new paradigm for non-invasive analysis of deep brain dynamics. The code of this study is available in https://github.com/hdy6438/NeuroFlowNet

Modeling neural population dynamics is crucial for foundational neuroscientific research and various clinical applications. Conventional latent variable methods typically model continuous brain dynamics through discretizing time with recurrent architecture, which necessarily results in compounded cumulative prediction errors and failure of capturing instantaneous, nonlinear characteristics of EEGs. We propose ODEBRAIN, a Neural ODE latent dynamic forecasting framework to overcome these challenges by integrating spatio-temporal-frequency features into spectral graph nodes, followed by a Neural ODE modeling the continuous latent dynamics. Our design ensures that latent representations can capture stochastic variations of complex brain states at any given time point. Extensive experiments verify that ODEBRAIN can improve significantly over existing methods in forecasting EEG dynamics with enhanced robustness and generalization capabilities.

Brain foundation models have achieved remarkable advances across a wide range of neuroscience tasks. However, most existing models are limited to a single functional modality, restricting their ability to exploit complementary spatiotemporal dynamics and the collective data scale across different neuroimaging techniques. This limitation largely arises from severe semantic heterogeneity and resolution discrepancies among modalities. To address these challenges, we propose Brain-OF, an omnifunctional brain foundation model jointly pretrained on fMRI, EEG and MEG, capable of handling both unimodal and multimodal inputs within a unified framework. To reconcile heterogeneous spatiotemporal resolutions, we introduce the Any-Resolution Neural Signal Sampler, which projects diverse brain signals into a shared semantic space. To further manage semantic shifts, the Brain-OF backbone integrates DINT attention with a Sparse Mixture of Experts, where shared experts capture modality-invariant representations and routed experts specialize in modality-specific semantics. Furthermore, to explicitly internalize the characteristics of neural activity through self-supervised learning, we propose Masked Temporal-Frequency Modeling, a dual-domain pretraining objective that jointly reconstructs brain signals in both the time and frequency domains. Brain-OF is pretrained on a large-scale corpus comprising around 40 datasets and demonstrates superior performance across diverse downstream tasks, highlighting the benefits of joint multimodal integration and dual-domain pretraining.

Electroencephalography (EEG) provides a non-invasive window into neural dynamics at high temporal resolution and plays a pivotal role in clinical neuroscience research. Despite this potential, prevailing computational approaches to EEG analysis remain largely confined to task-specific classification objectives or coarse-grained pattern recognition, offering limited support for clinically meaningful interpretation. To address these limitations, we introduce NeuroNarrator, the first generalist EEG-to-text foundation model designed to translate electrophysiological segments into precise clinical narratives. A cornerstone of this framework is the curation of NeuroCorpus-160K, the first harmonized large-scale resource pairing over 160,000 EEG segments with structured, clinically grounded natural-language descriptions. Our architecture first aligns temporal EEG waveforms with spatial topographic maps via a rigorous contrastive objective, establishing spectro-spatially grounded representations. Building on this grounding, we condition a Large Language Model through a state-space-inspired formulation that integrates historical temporal and spectral context to support coherent clinical narrative generation. This approach establishes a principled bridge between continuous signal dynamics and discrete clinical language, enabling interpretable narrative generation that facilitates expert interpretation and supports clinical reporting workflows. Extensive evaluations across diverse benchmarks and zero-shot transfer tasks highlight NeuroNarrator's capacity to integrate temporal, spectral, and spatial dynamics, positioning it as a foundational framework for time-frequency-aware, open-ended clinical interpretation of electrophysiological data.

Alzheimer's disease (AD) alters brain electrophysiology and disrupts multichannel EEG dynamics, making accurate and clinically useful EEG-based diagnosis increasingly important for screening and disease monitoring. However, many existing approaches rely on black-box classifiers and do not explicitly model the latent event timing and cross-channel coordination behind their decisions. To address these limitations, we propose LERD, an end-to-end Bayesian latent event--relational dynamical system that infers latent neural events and their relational structure directly from multichannel EEG without event or interaction annotations. LERD combines a continuous-time event inference module with a stochastic event-generation process to capture flexible temporal patterns, while incorporating an electrophysiology-inspired dynamical prior to guide learning in a principled way. We further provide theoretical analysis that yields a tractable IVP-based KL regularizer and stability guarantees for the inferred relational dynamics. Extensive experiments on synthetic benchmarks and two real-world AD EEG cohorts demonstrate that LERD consistently outperforms strong baselines and yields physiology-aligned rate, timing, and graph summaries that help characterize group-level dynamical differences.

Epilepsy affects over 50 million people worldwide, and one-third of patients suffer drug-resistant seizures where surgery offers the best chance of seizure freedom. Accurate localization of the epileptogenic zone (EZ) relies on intracranial EEG (iEEG). Clinical workflows, however, remain constrained by labor-intensive manual review. At the same time, existing data-driven approaches are typically developed on single-center datasets that are inconsistent in format and metadata, lack standardized benchmarks, and rarely release pathological event annotations, creating barriers to reproducibility, cross-center validation, and clinical relevance. With extensive efforts to reconcile heterogeneous iEEG formats, metadata, and recordings across publicly available sources, we present $\textbf{Omni-iEEG}$, a large-scale, pre-surgical iEEG resource comprising $\textbf{302 patients}$ and $\textbf{178 hours}$ of high-resolution recordings. The dataset includes harmonized clinical metadata such as seizure onset zones, resections, and surgical outcomes, all validated by board-certified epileptologists. In addition, Omni-iEEG provides over 36K expert-validated annotations of pathological events, enabling robust biomarker studies. Omni-iEEG serves as a bridge between machine learning and epilepsy research. It defines clinically meaningful tasks with unified evaluation metrics grounded in clinical priors, enabling systematic evaluation of models in clinically relevant settings. Beyond benchmarking, we demonstrate the potential of end-to-end modeling on long iEEG segments and highlight the transferability of representations pretrained on non-neurophysiological domains. Together, these contributions establish Omni-iEEG as a foundation for reproducible, generalizable, and clinically translatable epilepsy research. The project page with dataset and code links is available at omni-ieeg.github.io/omni-ieeg.

Sleep is essential for health, yet studying its dynamics requires manual sleep staging, a labor-intensive step in research and clinical care. Across centers, polysomnography (PSG) recordings are traditionally scored in 30-s epochs for pragmatic, not physiological, reasons and vary in electrode count, montage, and subject characteristics. These constraints challenge harmonized multi-center studies and the discovery of robust biomarkers on shorter timescales. We present AnySleep, a deep neural network that scores sleep from any electroencephalography (EEG) or electrooculography (EOG) data at adjustable temporal resolutions. We trained and validated the model on over 20,000 overnight recordings (> 200,000 hours of EEG and EOG) from 28 datasets across multiple clinics to promote robust generalization across sites. The model attains state-of-the-art performance and surpasses or equals established baselines at 30-s epochs. Performance improves with more channels, yet remains strong when EOG is absent or only EOG or single EEG derivations (frontal, central, or occipital) are available. On sub-30-s timescales, the model captures short wake intrusions consistent with arousals and improves prediction of pathophysiological conditions (obstructive sleep apnea, narcolepsy type 1, insomnia) over 30-s scoring. We make the model publicly available to facilitate large-scale studies with heterogeneous electrode setups and accelerate biomarker discovery in sleep.

Dementia disorders such as Alzheimer's disease (AD) and frontotemporal dementia (FTD) exhibit overlapping electrophysiological signatures in EEG that challenge accurate diagnosis. Existing EEG-based methods are limited by full-band frequency analysis, which hinders the precise differentiation of dementia subtypes and severity stages. To address this limitation, we propose a Variational Mixture of Graph Neural Experts (VMoGE) framework that integrates multi-band EEG analysis with variational graph neural networks and a mixture-of-experts architecture. Each expert specializes in a specific EEG frequency band and models brain connectivity using a Gaussian Markov random field prior, while a variational gating mechanism adaptively integrates the expert outputs. This design enables the model to learn frequency-specific brain network representations while modeling latent uncertainty through variational inference. Experimental results on two EEG dementia datasets show that VMoGE achieves strong performance, with an AUC of 0.89 for HC vs. AD classification in the main comparison and competitive results across dementia subtyping and CDR staging tasks. Clinically, VMoGE offers three key translational values: the expert gating weights correlate with MMSE scores and CDR severity; slow-wave $δ$- and $θ$-band contributions are associated with AD-related EEG slowing and disease progression; and spatially localized activation maps reveal posterior $θ$- and $α$-band alterations and region-specific $β$-band changes, providing neurophysiologically interpretable markers aligned with known AD neuropathology.

Electroencephalogram monitoring devices and online data repositories hold large amounts of data from individuals participating in research and medical studies without direct reference to personal identifiers. This paper explores what types of personal and health information have been detected and classified within task-free EEG data. Additionally, we investigate key characteristics of the collected resting-state and sleep data, in order to determine the privacy risks involved with openly available EEG data. We used Google Scholar, Web of Science and searched relevant journals to find studies which classified or detected the presence of various disorders and personal information in resting state and sleep EEG. Only English full-text peer-reviewed journal articles or conference papers about classifying the presence of medical disorders between individuals were included. A quality analysis carried out by 3 reviewers determined general paper quality based on specified evaluation criteria. In resting state EEG, various disorders including Autism Spectrum Disorder, Parkinson's disease, and alcohol use disorder have been classified with high classification accuracy, often requiring only 5 mins of data or less. Sleep EEG tends to hold classifiable information about sleep disorders such as sleep apnea, insomnia, and REM sleep disorder, but usually involve longer recordings or data from multiple sleep stages. Many classification methods are still developing but even today, access to a person's EEG can reveal sensitive personal health information. With an increasing ability of machine learning methods to re-identify individuals from their EEG data, this review demonstrates the importance of anonymization, and the development of improved tools for keeping study participants and medical EEG users' privacy safe.

Recent advances in self-supervised learning for EEG representation have largely relied on masked reconstruction, where models are trained to recover randomly masked signal segments. While effective at modeling local dependencies, the training objective of masked reconstruction does not compel the model to capture global generative constraints essential for characterizing neural activity. To address this limitation, we propose EEGDM, a novel self-supervised framework that leverages latent diffusion models to generate EEG signals as an objective. Unlike masked reconstruction, diffusion-based generation progressively denoises signals from noise to realism, compelling the model to capture holistic temporal patterns and cross-channel relationships. Specifically, EEGDM incorporates an EEG encoder that distills raw signals and their channel augmentations into a compact representation, which serves as conditional information to guide the diffusion denoising process, thereby enabling the encoder and diffusion model to be jointly optimized through the generative objective. This design endows EEGDM with a compact latent space, which not only offers ample control over the generative process but also can be leveraged for downstream tasks. Experimental results show that EEGDM (1) reconstructs high-quality EEG signals, (2) learns robust representations, and (3) achieves competitive performance across diverse downstream tasks, thus exploring a new direction for self-supervised EEG representation learning.