Overview

Feature selection studies which variables, channels, bands, or learned dimensions carry useful information, aiming to simplify models and improve prediction, interpretation, or measurement efficiency. Common approaches include Lasso and elastic net regularization, filters such as mRMR and Boruta, Bayesian spike-and-slab models, and wrapper or evolutionary searches; newer methods use neural gates, attribution scores, and sequential policies. Unsupervised methods select features for clustering or representation learning, while applications span tabular data, omics, EEG, hyperspectral imagery, and time series. A central challenge is that selected features can change with correlated inputs, evaluation design, or distribution shifts, so predictive accuracy must be considered alongside stability, error control, computational cost, and strong baselines.

Latest papers

196 papers27 papers in the last four weeks, up 59% on the four weeks before. 0.2% of all new papers.

Jun 16, 2026

Multi-Adapter PPO: A Cross-Attention Enhanced Wavelength Selection Framework for LIBS Quantitative Analysis

Laser-induced breakdown spectroscopy (LIBS) quantitative analysis faces critical challenges in wavelength selection due to high-dimensional spectral data and the fundamental trade-off between prediction accuracy and feature efficiency. This paper presents a novel Multi-Adapter PPO framework that transforms wavelength selection into a reinforcement learning problem, leveraging cross-attention mechanisms and multiple specialized adapters to capture complex spectral relationships. Our approach outperforms traditional Particle Swarm Optimization (PSO) by an average of 28.4% in comprehensive score and 45.2% in prediction accuracy across steel and coal datasets. The proposed method demonstrates superior performance in balancing prediction accuracy with feature efficiency, achieving state-of-the-art results in LIBS quantitative analysis while maintaining interpretability and computational efficiency. We released our code and dataset here: https://github.com/Hflying/MAPPO
Jun 15, 2026

Robust Image-Driven Phenotyping of Ovarian Tumor Cells using Optimized Dynamic Features in Hyperbolic Channels

Label-free, image-based cellular mechanophenotyping in microfluidic devices provides a high-throughput method for single-cell profiling. However, while complex microchannels (e.g., hyperbolic geometries) reveal transient deformation dynamics under continuous extensional stress, the resulting high-dimensional feature spaces are highly susceptible to hydrodynamic artifacts. Flow rate variations often distort discriminative boundaries, linking feature distributions to fluid conditions rather than intrinsic biology. To overcome this, we introduce a stability-guided analytical framework that decouples flow-induced noise from authentic mechanobiological signatures. We tracked the morphodynamic, kinematic, and intracellular optical-density trajectories of healthy and malignant ovarian cells to build a 93-dimensional feature space. Using a cross-flow screening strategy based on structural consistency and statistical persistence, we isolated robust descriptors, creating task-adapted subsets (20 features for binary classification; 25 for cancer subtyping). Variance-attribution analysis confirmed the neutralization of flow-conditioned artifacts; notably, flow-associated variance in the primary principal component fell from 69.9% to 9.3% in the subtyping task. We also found that macroscopic binary discrimination depends on bulk kinematic transitions, while clonal subtyping requires localized intracellular optical heterogeneity. These optimized subsets maintained diagnostic fidelity across multiple machine learning architectures and restricted sampling conditions. This framework establishes a robust, flow-independent foundation for continuous dynamic phenotyping.
Jun 11, 2026

Robust State-Conditional Feature-Weighted Jump Models for Temporal Clustering

We propose a robust feature-weighted jump model for time-dependent clustering. A penalty is used to encourage smoothness of transitions over time, while robustness is achieved through the use of a Tukey's biweight loss function. An additional parameter controls the variability of feature weights across states, allowing the model to assign state-specific relevance to each feature. We illustrate in simulation how the method accurately recovers the true cluster sequence and reliably identifies relevant features, outperforming competing approaches, particularly in the presence of outliers. We conclude with two empirical applications, one on the number of conflict-related homicides in Kosovo in the period 1998-2000, and another on macroeconomic performance of twelve European countries in the period 1949-2024.
Jun 8, 2026

Vision-Language Guided Hyperspectral Object Tracking via Semantics Fusion and Contextual Template Updating

Hyperspectral object tracking (HOT) leverages the rich spectral information provided by hyperspectral videos (HSVs), offering substantial potential for object tracking. However, efficiently extracting and exploiting spectral information from redundant spectral bands remains a fundamental challenge, which severely limits model generalization and tracking performance. Moreover, in dynamic scenes, targets often experience drastic appearance variations due to factors such as occlusion and illumination changes. These variations lead to large deformations between the current frame and the template. Such discrepancies pose major challenges for existing temporal modeling approaches. In this work, we propose VLHTrack, a novel hyperspectral vision-language (VL) joint tracking framework. Specifically, we incorporate language priors to address the fundamental challenge of spectral redundancy by designing a Language-Guided Band Selection Module (LBSM). By leveraging Large Language Model (LLM) descriptions, LBSM establishes a semantic-to-spectral mapping that mitigates redundancy and accentuates discriminative spectral features. A Multi-Modal Vision-Language Fusion Module is then employed to seamlessly integrate visual and linguistic embeddings, harnessing their complementary advantages to learn coherent cross-modal representations. To address target deformation in long-term sequences, we propose a dynamic update template feature strategy implemented via the Dynamic Template Update with Mamba (DTUM) module. By leveraging selective state space modeling, DTUM learns inter-frame dependencies to update template feature, ensuring efficient template feature evolution guided by temporal context. Experiments on HOT2023 and HOT2024 demonstrate that VLHTrack outperforms state-of-the-art (SOTA) methods.
Jun 7, 2026

nCMD: Benign-Anchored Feature Selection for Imbalanced Network Intrusion Detection

Feature selection is critical for network intrusion detection systems (NIDS) operating under high-dimensional, highly imbalanced traffic, as found in operational and defense networks. Traditional filter methods rank features using global statistics computed symmetrically across classes and thus fail to capture the asymmetry of intrusion detection, where attacks are best characterized as deviations from dominant benign traffic. We propose benign-anchored Classwise Mean Deviation (nCMD), a lightweight and interpretable method that scores feature relevance based on the deviation of attack-class distributions from the benign-class mean, rather than a globally biased reference. This approach aligns feature selection with the operational semantics of NIDS at no additional computational cost. Across four benchmark datasets (CICIDS2017, CICDDoS2019, NSL-KDD, and UNSW-NB15), multiple feature budgets, and three downstream classifiers, nCMD matches or exceeds classical filter baselines in macro-averaged F1-score. It achieves the best result on three of the four datasets and under every classifier, with the strongest improvements observed under tight feature budgets and severe class imbalance. These results support benign-anchored ranking as a scalable and interpretable preprocessing component for resource-constrained NIDS.
Jun 7, 2026

Hierarchical Projection for Adaptive Knowledge Transfer

Modern data-driven applications increasingly involve learning from multiple heterogeneous sources, where a target dataset is limited but related information is available across domains. Naively combining these sources can degrade performance when relevance varies or spurious signals are present, posing a fundamental challenge for trustworthy cross-domain learning. We propose Projection Transfer Learning (ProjectionTL), a unified framework that integrates hierarchical Bayesian modeling with adaptive projection for selective knowledge transfer. The key idea is to decouple transfer at two levels: first, we construct a source-guided hierarchical prior that aggregates information across sources using data-driven weights, capturing global alignment between each source and the target; second, we refine this borrowing through a posterior-projection step that operates at the feature level, selectively retaining coordinates that exhibit local agreement with the target signal. This two-stage design enables the method to simultaneously perform source selection and feature selection, thereby mitigating negative transfer while preserving interpretability. ProjectionTL provides a principled approach to integrating heterogeneous data across domains, bridging statistical modeling and modern machine learning paradigms for robust and interpretable transfer. Through simulations and real-world biomedical applications, we demonstrate improved accuracy, stability, and interpretability compared to existing methods. Our framework offers a scalable and generalizable strategy for trustworthy cross-domain learning in high-dimensional settings.
Jun 5, 2026

Bias in Filter Feature Selection Evaluation: A Meta-Analysis of Datasets, Baselines, and Experimental Design Choices

Background: Since 1990 many feature selection methods have been proposed across heterogeneous applications. To validate the usefulness of a new method, it needs to be compared against at least one baseline method from the existing literature on a feature selection task using at least one dataset. Recent developments in tabular Deep Learning (DL) and data valuation in Machine Learning (ML) suggest that the evaluation of new methods, algorithms, and models may be consciously or unconsciously biased. We hypothesise that a similar trend exists in feature selection (FS), particularly in filter feature selection (FFS). The aim of this study is therefore to examine FFS studies to identify factors that influence the evaluation and that might consist entry point for biases in order to recommend stronger principles for FFS evaluation. Methods: We analyse a sample of 28 high profile FFS studies published between 1994 and 2025. The analysis provides reflections on how to examine FFS studies, highlights lessons learned throughout the process, and gives five evidence-based recommendations for future FFS evaluation. Results: Multivariate Linear Regression analysis achieved a score of R2=0.33R^2=0.33. It means that 33% of the variance in the performance of new methods against chosen baselines (win rate) is explained by the number of datasets (#Datasets), the number of baselines (#Baselines), and the number of new methods (#NewMethods). Discussion: R2=0.33R^2=0.33 is considered medium explanation; which is promising given that this is the first such study. The medium explanation result is due to the fact that win rate is influenced by additional factors such as the maturity of the feature selection domain, the type of datasets and baselines, and the simplicity of the regression model used to explain the relationship.
Jun 4, 2026

Adaptive Band Selection for Hyperspectral Classification with Spatially Disjoint Evaluation

Hyperspectral band selection methods based on differentiable selectors can be sensitive to initialization and to extracting a final discrete subset, while prescribed band counts limit flexibility. We propose SGBR-HC (Spectral-Group Band Ranking with Hard-Concrete initialization), a two-stage method that uses a supervised spectral ranking to initialize trainable sparse gates rather than treating ranking as a fixed selection rule, letting the number of selected bands be determined by training. Stage-1 scores candidate bands from training pixels by class discriminability and spectral diversity; this ranking seeds the gate logits for Stage-2, which trains the sparse gates jointly with a spatial classifier. Under spatially disjoint evaluation on Pavia University and Houston 2013, verified by retraining a fresh classifier on the selected bands, SGBR-HC achieves the highest mean overall accuracy and Cohen's kappa with approximately twenty bands. Bypassing Stage-1 degrades OA by 8.84 pp on Pavia University and 22.15 pp on Houston 2013, confirming the ranking prior's role. Random pixel splits inflate OA on Pavia University by 30.56 pp, underscoring spatial leakage as a critical evaluation confound.
Jun 3, 2026

Radiomic Feature Selection Using Gradient Loss of Deep Neural Network for Lung Cancer Stage Detection

Radiomics enables extraction of quantitative imaging biomarkers from medical images and has become an important tool for computer-aided cancer diagnosis. However, radiomics datasets are typically high-dimensional with limited samples, making feature selection a critical step for building reliable predictive models. This study proposes a Gradient-Loss Recursive Feature Elimination (GL-RFE) framework that integrates gradient sensitivity analysis from a deep neural network to identify the most influential radiomic features for lung cancer stage detection. A total of 106 radiomic features were extracted from chest Computed Tomography (CT) scans using the PyRadiomics extension of the 3D Slicer platform. The proposed method evaluates feature importance by computing gradients of the network loss with respect to input features and recursively eliminates features with minimal contribution. The resulting top-15 radiomic features are used to train a deep neural network classifier for distinguishing early-stage and advanced-stage lung cancer. The proposed framework achieves strong classification performance, with accuracy of 90.22%, precision of 90.10%, recall of 90.24%, and F1-score of 90.16% on the test dataset. Visualization analyses, including correlation heat maps and distribution plots, further confirm reduced feature redundancy and improved class separability. Compared to conventional feature selection techniques, GL-RFE effectively captures nonlinear feature interactions and enhances model generalization. The presented protocol provides a reproducible and interpretable methodology for radiomics-based cancer stage detection and is particularly suitable for high-dimensional, small-sample biomedical datasets, with potential applications in other domains such as genomics and multimodal clinical analysis.
Jun 3, 2026

Knockoffs-based False Discovery Rate Control and Simplification for Deep Neural Networks

The deep neural network is a widely used framework in machine learning that has been widely applied in various fields. However, deep neural networks often involve a large number of parameters and inputs, many of which may be irrelevant to the goal or true output. These parameters and input variables not only increase computational complexity, but also contribute to additional computational cost. One solution to this problem is knockoff methods, which have proven successful in controlling false discovery rates in high-dimensional regression. Building on the knockoff methods and using the regularised neural network, this paper proposes three variable screening methods under the condition of controlling false discovery rates: one layer filter, multiple layers filter, and variable weight aggregation filter. In comparison with existing algorithms, we find that our algorithms show satisfactory performance.
Jun 2, 2026

A Fast Screening Approach for High-dimensional Outcomes and High-dimensional Predictors

Modeling interactions among multimodal, high-dimensional data is intrinsically challenging due to ultra-high dimensionality and complex dependence structure with high level noise. Screening methods are effective for reducing dimensionality, but most existing approaches shrink only the predictor space while retaining all outcomes. In cross-modal analyses, different outcomes often select different predictor subsets, so the union remains large and the response dimension is unchanged, limiting the practical benefit of screening. This gives rise to heavy computational burdens and poor interpretability. To address these limitations, we propose a new screening framework, Graph Independence Dual Screening (GIDS), which simultaneously reduces the dimensionality of response variables and predictors. We design computationally efficient algorithms that facilitate downstream selection procedures, improving accuracy and scalability, and establish supporting theoretical results. Extensive simulation studies demonstrate that GIDS outperforms existing methods that screen only predictors. To illustrate its utility, we applied GIDS to the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, analyzing interactions between genome-wide 865,353 DNA methylation and 49,386 transcriptomic variables. GIDS reduced the feature space to approximately 9,000 CpGs and 2,000 transcripts, uncovering blockwise interaction structures: clusters of CpG sites and gene transcripts with strong associations. These findings not only improve computational tractability but also yield interpretable biological insights, highlighting coordinated regulatory mechanisms underlying Alzheimer's disease.
Jun 1, 2026

RobustModelMaker: Coupling Bootstrap Stability Selection with Leakage-Safe Nested Cross-Validation for Scientific Machine Learning

Small-to-medium scientific datasets place machine learning pipelines under two compounding pressures. Single-run feature selection produces feature sets that change substantially under small perturbations of the training data, and any procedure that uses the same data for selection, tuning, and evaluation produces optimistically biased performance estimates. The two failure modes are routinely treated as separable, but in the regimes where scientific data live, they interact: an unstable selection inflates the variance of an already-optimistic score, and standard remedies for one rarely address the other. RobustModelMaker is a Python framework that couples bootstrap stability selection with strict nested cross-validation, performs all preprocessing and selection inside each fold, and produces a stability-tested feature subset together with a leakage-safe performance estimate. The framework supports nine algorithms across binary classification, multiclass classification, and regression. Behaviour is verified by a deterministic test suite spanning unit, performance, and reproducibility checks on three real scientific datasets comparing to three alternative selectors (ANOVA F-test, recursive feature elimination with cross-validation, and Boruta) on both predictive score and a Jaccard measure of selection stability. RobustModelMaker is competitive in score with the best alternative selector on each dataset, and occupies a position on the joint score-stability frontier that none of the alternatives match across all three task types. Two example applications, ovarian cancer biomarker discovery from the PLCO Trial and critical-temperature regression on the UCI Superconductivity Data, illustrate how the framework is used in practice and what trade-offs become visible when stability is treated as a first-class deliverable rather than an emergent property.
May 31, 2026

LeAP: Learnable Adaptive Permutation for Feature Selection in Heterogeneous and Sparse Recommender Systems

Modern industrial recommender systems rely on thousands of heterogeneous features -- ranging from low-dimensional scalars (e.g., statistical value) to high-dimensional embeddings (e.g., user-id embeddings, MLP representations) -- to achieve high-precision predictions. Given the immense computational costs associated with training, efficient feature selection is critical. However, existing methods encounter three primary bottlenecks: (1) they typically assume uniform feature dimensions or require costly mapping to a fixed size; (2) they struggle with extreme sparsity, where the majority of features (e.g., 99%+) remain at default values; and (3) traditional permutation-based approaches are computationally prohibitive in large-scale settings. To address these challenges, we propose LeAP (Learnable Adaptive Permutation), a novel, model-agnostic plug-in module for feature selection. LeAP transforms the inefficient random permutation process into a learnable mechanism, significantly accelerating the evaluation of feature importance. In addition, we introduce an adaptive regularization strategy tailored for heterogeneous dimensions and extreme sparsity, enabling superior feature importance ranking results across asymmetric input spaces. Experiments on four public recommendation datasets demonstrate that LeAP achieves state-of-the-art performance. Furthermore, LeAP has been deployed in a large-scale industrial search ranking model with over a billion daily requests and a 2TB model parameter scale. In this real-world scenario involving 12,000+ total feature dimensions, LeAP successfully identified and removed over 3,600 redundant dimensions without performance degradation, which is 2 to 10 times the ability of compared baseline methods.
May 29, 2026

Feature-Optimized Vision for Adaptive 3D Scene Reconstruction

Three-dimensional scene reconstruction depends on local image evidence that is both visually discriminative and geometrically useful. Fixed feature thresholds and uniform feature budgets are easy to deploy, but they can waste computation on repeated texture, low-parallax regions, or unstable points. This paper proposes an adaptive feature-optimized vision front end for 3D reconstruction. The method scores candidate features by texture, repeatability, distinctiveness, expected triangulation angle, and spatial coverage, then allocates a per-view feature budget to maximize useful tracks under a fixed reconstruction pipeline. A small synthetic multi-view prototype evaluates four selection policies across corridor, facade, object-table, and cluttered scenes. Compared with random, texture-only, and uniform-grid baselines, the adaptive policy obtains the best quality-aware completeness and the lowest aggregate reconstruction RMSE while preserving broad image coverage. The result is not a replacement for modern learned matching or neural reconstruction systems; it is a modular front-end policy that can make classical and learned 3D pipelines more deliberate about which visual evidence they spend compute on.
May 29, 2026

QDSP: An Interpretable Structured Learning Framework for Predicting Death or Cerebral Palsy in Very Low Birth Weight Infants

Very low birth weight infants (VLBWI) are at high risk of mortality and severe neurodevelopmental impairment, including cerebral palsy, yet reliable discharge-time prognostic stratification remains challenging in high-dimensional and data-limited clinical settings. To address this problem, we propose QDSP, an interpretable structured learning framework that integrates Quota-guided Subspace Sampling (QSS) and Differentiable-decision-guided Structure Perception (DSP). The QSS module constructs stability-aware and low-redundancy feature subspaces through bootstrap-based feature consistency estimation, whereas the DSP module employs differentiable soft oblique decision structures to model nonlinear clinical interactions while preserving traceable decision evidence. The proposed framework was evaluated on a real-world VLBWI cohort comprising 51 infants and further validated on three public medical tabular datasets. On the primary cohort, QDSP achieved an accuracy of 0.9200 and an AUC of 0.9714, outperforming representative machine learning and deep tabular learning baselines, including XGBoost, TabNet, and TabPFN. Across external datasets, QDSP maintained competitive discrimination and calibration under varying sample sizes and clinical distributions. In addition, SHAP-based analyses and differentiable decision-path tracing identified clinically relevant predictors, including cystic periventricular leukomalacia (cPVL) and birth weight, consistent with established neonatal pathophysiological evidence. These results suggest that QDSP provides an interpretable and robust framework for discharge-time risk stratification in VLBWI and may support early individualized clinical decision-making in neonatal intensive care settings.
May 28, 2026

A Domain-Informed Multi-Objective Framework for EEG Channel Selection in Motor Imagery BCIs

Motor imagery (MI) classification using electroencephalography (EEG) signals is essential for advancing brain-computer interfaces (BCIs). Traditional EEG channel selection methods often face limitations, such as dependency on single-objective criteria and susceptibility to local optima. To address these challenges, this work proposes a multi-objective optimisation framework that employs non-dominated sorting genetic algorithm, multiple-objective particle swarm optimisation, and a multi-objective evolutionary algorithm based on decomposition. Our approach effectively balances spatial relevance, using a Gaussian kernel, and functional discriminability, which assesses intratrial task-related desynchronisation, thereby improving performance. We evaluated this framework on four EEG datasets: Physionet, OpenBMI, HighGamma, and BCIIV-2A. The proposed approach successfully identifies compact, relevant channel subsets concentrated around sensorimotor cortex regions linked to MI activity, addressing the prevalent challenges of dimensionality and complexity inherent to traditional techniques. Furthermore, the framework achieved classification performance of 87%, 71%, 75%, and 65% on the Physionet, OpenBMI, HighGamma, and BCIIV-2A datasets, respectively. By outperforming existing single-objective and accuracy-based methods, and those relying on fixed subsets, these findings demonstrate that this new multi-objective optimisation framework can enhance MI-based BCI performance while facilitating compact channel configurations with reduced computational complexity, making them better suited for wearable, portable, and real-time BCI applications.
May 28, 2026

The Good, the Bad, and the Ugly of Markov Boundary for Tabular Prediction

Under standard graphical assumptions, the Markov boundary of a target variable is the smallest set of features that renders every other feature redundant. Once the boundary is observed, the target is conditionally independent of the rest of the table. This is a tempting object for tabular prediction, since it names exactly the columns a model should need. Yet modern regressors are still trained on the full feature set. We ask whether the Markov boundary is genuinely useful for prediction on SCM3K, a 3,450-task synthetic SCM benchmark with feature counts from 40 to 1000 and six SCM families, evaluated with six regressors. The answer is more nuanced than the theory suggests. Restricting a regressor to the oracle boundary often improves prediction substantially, and the improvement grows as the feature space becomes larger and sparser. But the natural pipeline of recovering the boundary with causal discovery and training on the recovered mask does not deliver. Existing estimators exhaust the compute budget before reaching the regime where the boundary helps most, and even where they run they rarely beat the full feature set. We trace this to three causes. Discovery optimizes structural recovery rather than prediction. False negatives and false positives carry sharply asymmetric predictive cost. The exact boundary is only one of many feature sets that beat all features. We then develop what these facts imply for prediction-aligned feature selection and for tabular models that learn to use causal structure.
May 27, 2026

Bayesian Gated Non-Negative Contrastive Learning

While Contrastive Learning (CL) has revolutionized self-supervised representation learning, its latent representations remain highly entangled and opaque, limiting their interpretability in safety-critical applications. We identify that a fundamental cause of this entanglement is the reliance on deterministic similarity measures, which treat all feature dimensions equally. In compositional scenes, this creates an Optimization Conflict: common background features, such as, "blue sky", are encouraged to align in positive pairs but simultaneously repelled in negative pairs, causing gradient oscillations that hinder precise semantic disentanglement. To address this, we propose BayesNCL (Bayesian Gated Non-Negative Contrastive Learning). Unlike standard approaches, BayesNCL introduces a probabilistic gating mechanism that dynamically filters out task-irrelevant, high-frequency common features while selectively retaining discriminative semantics. By formalizing feature selection as a variational inference problem with a sparse Bernoulli prior, our method effectively resolves the optimization conflict. Empirical experimental results on Imagenet-100 demonstrate that BayesNCL achieves a remarkable 142.1% improvement in semantic consistency compared to state-of-the-art baselines, yielding highly interpretable representations without compromising downstream task performance. Code is available at https://github.com/Cui-Peng-624/BayesNCL.
May 26, 2026

Sparse POD Mode Selection and Manifold Dimensionality Reduction with Neural Networks

Linear dimensionality reduction methods such as proper orthogonal decomposition (POD) make high-dimensional data amenable to analysis by identifying the principal components, or modes, that capture the most variance, or energy, in the data and constructing a low-dimensional representation in the subspace they span. Such linear methods struggle, however, for data with slowly decaying Kolmogorov nn-widths, such as advection-dominated and turbulent flows, which require many modes for accurate reconstruction; moreover, energy-based truncation can discard low-energy modes needed to capture small-scale features. Recent nonlinear manifold methods using polynomial mappings with alternating or greedy mode selection achieve better reconstruction with fewer modes, but fix the form of the nonlinear mapping a priori, limiting expressivity. In contrast, neural network (NN) manifolds offer greater expressivity yet employ energy-based selection. We present SparseModesNet, a dimensionality reduction framework that employs linear encoding and nonlinear NN decoding. The decoder leverages LassoNet, a method enforcing hierarchical sparsity through a residual connection with a linear skip layer, to simultaneously select informative modes and learn a nonlinear mapping that minimizes reconstruction error. On benchmark advection-dominated and chaotic flows, SparseModesNet matches or exceeds state-of-the-art performance. For turbulent channel flow at friction Reynolds number Reτ=5200Re_τ= 5200, our method reduces reconstruction error by 51-78% compared to existing polynomial manifold methods while maintaining interpretability through physically meaningful mode selection.
May 26, 2026

Data-driven sparse identification of governing PDEs via knockoff filters and multi-criteria trade-offs

We propose KO-PDE-IDENT, a data-driven framework for identifying parsimonious partial differential equations (PDEs) with false discovery rate (FDR) control. PDE discovery from noisy observations is often hindered by extreme multicollinearity among candidate terms, which causes typical sparse-regression methods to select spurious terms. To address this problem, KO-PDE-IDENT initially mines a support set of potential candidate terms via model-X knockoff filters with finite-sample FDR control, then refines and ranks the surviving PDE alternatives. The framework integrates three components. First, knockoff feature statistics are constructed by coupling ℓ0\ell_{0}-constrained adaptive best-subset selection with SHapley Additive exPlanations (SHAP), yielding an effective and computationally efficient difference statistic. Second, a recursive feature elimination (RFE) procedure removes terms whose marginal contributions are dispensable and assesses statistical necessity through knockoff-perturbed hypothesis testing. Third, the final model selection is formulated as a multi-criteria decision-making (MCDM) problem, where the optimal governing equation is the alternative that best balances a wide range of criteria such as predictive accuracy, model complexity and coefficient uncertainty. We evaluate KO-PDE-IDENT on five canonical PDEs under severe noise corruption. Empirical results show that our framework can exactly recover the true PDE structure, eliminating false discoveries while retaining all true underlying terms, with low coefficient estimation error.
May 25, 2026

Efficient Benchmarking Is Just Feature Selection and Multiple Regression

Efficient benchmarking techniques aim to lower the computational cost of evaluating LLMs by predicting full benchmark scores using only a subset of a benchmark's questions. By reframing this problem as an instance of multiple regression with feature selection, we find that existing efficient benchmarking methods can be greatly improved by simply using kernel ridge regression at the prediction stage. Additionally, using an information-theoretic feature-selection algorithm called minimum redundancy maximum relevance (mRMR), we can further improve upon these methods by selecting question subsets that will be maximally useful for prediction. Except in very data-poor settings, these approaches consistently achieve smaller prediction errors (in both MAE and RMSE), and greater ranking correlation between predicted and true scores (in both Spearman ρρ and Kendall ττ) across a range of benchmarks using both binary and continuous metrics. Furthermore, mRMR subsampling is much faster than competitor methods (which often involve fitting probabilistic models or running clustering algorithms), and is more likely to select the same questions under different random seeds or training data splits. Tutorial code can be found at https://github.com/sambowyer/mrmr_eval .
May 23, 2026

Assessing Region-Level EEG Contributions to Cognitive Workload Prediction

Accurate and generalizable estimation of cognitive workload from electroencephalography (EEG) is critical for human-centered and safety-critical systems. Although EEG is widely used for workload assessment, the consistency of region-level EEG contributions across tasks, datasets, and subjects remains unclear. This paper presents a region-level evaluation framework for EEG-based workload prediction in which models are trained and evaluated using features extracted exclusively from electrodes belonging to anatomically defined scalp regions. We perform a large-scale analysis across four publicly available EEG workload datasets spanning diverse task demands, recording hardware, and electrode montages. Region importance is quantified using a model-agnostic, performance-based approach under both mixed-subject and subject-independent evaluation protocols, with results aggregated using a rank-based strategy to ensure robustness across experimental configurations. Across all datasets and subject-independent evaluations, frontal electrode groups outperform the full-scalp baseline by approximately 15-20% in relative rank position while using substantially fewer electrodes. Fronto-central regions exhibit the most stable predictive utility, whereas posterior and occipital regions contribute less consistently across experimental conditions. These findings indicate that workload-relevant EEG information is most consistently retained within frontal and fronto-central electrode groups, supporting the design of efficient and generalizable EEG-based workload monitoring systems.
May 21, 2026

LLM Sparsity Prior for Robust Feature Selection

Large language models (LLMs) offer a scalable mechanism to elicit domain-informed prior information for high-dimensional variable selection. However, existing methods such as LLM-Lasso are sensitive to weight quality, with performance degrading substantially when LLM-generated weights are inaccurate. To address this challenge, we first introduce a framework for quantifying the quality of LLM-generated weights, enabling rigorous evaluation of LLM-informed methods across varying weight regimes. We then propose the LLM Sparsity Prior (LSP), which integrates LLM-generated weights into the prior inclusion probabilities of Spike-and-Slab and Spike-and-Slab Lasso models via two interpretable hyperparameters governing global sparsity and weight concentration. Hierarchical hyperpriors on these parameters allow the model to dynamically discount uninformative or misleading weights, improving robustness without sacrificing gains when weights are accurate. Finally, we develop principled prompt engineering strategies and validate the method on a private medical dataset studying Acute Kidney Injury. LSP improves prediction accuracy and identifies clinically relevant features missed by the baselines, with robustness to prompt variation and particular effectiveness in low-data regimes.
May 21, 2026

Worse than Random: The Importance of a Baseline for Unsupervised Feature Selection

Many novel unsupervised feature selection methods are proposed each year, yet their empirical evaluation is limited to supervised and unsupervised evaluation metrics computed on selected datasets, along with comparisons to existing methods. However, in the absence of an established evaluation baseline, it is difficult to determine the value added to the existing literature by each of these methods, and how effective their underlying approaches are. We propose using random feature selection as a baseline for evaluating the unsupervised feature selection methods. We empirically show that many of the state-of-the-art methods in unsupervised feature selection are outperformed by random feature selection in both performance and efficiency. Accordingly, we emphasize on the strict requirement of considering random feature selection as a baseline in the development process of novel unsupervised feature selection methods to ensure a consistent improvement over random feature selection.
May 21, 2026

Cyber-Physical Anomaly Detection in IoT-Enabled Smart Grids Using Machine Learning and Metaheuristic Feature Optimization

Modern smart grids rely on dense measurement infrastructures, communication links, and intelligent field devices. Although this improves supervision and control, it also increases vulnerability to cyber-physical disruptions. Operators must distinguish physical incidents, such as faults or line disturbances, from malicious actions, such as false data injection or unauthorized command execution. This chapter investigates this problem using the well-known MSU/ORNL Power System Attack Dataset. The proposed method combines machine learning with genetic-algorithm-based feature selection. The objective is twofold: to classify attack and natural events accurately, and to determine whether a reduced set of physically informative PMU/IED measurements can support reliable detection. Several baseline models are evaluated, including logistic regression, RBF-SVM, XGBoost, Random Forest, and Extra Trees. The results show that tree-based ensemble models are the most effective for the considered dataset, with Extra Trees providing the strongest full-feature baseline. After feature selection, the GA + Extra Trees model reduces the clean PMU feature space from 112 attributes to an average of 27.4 attributes over five runs, while increasing macro-F1 from 0.9118 to 0.9212 and ROC-AUC from 0.9791 to 0.9837. These results indicate that many synchronized electrical measurements are redundant. A compact subset of phasor-based features can still provide accurate and interpretable anomaly detection in smart grids.
May 21, 2026

Explainable AI for Data-Driven Design of High-Dimensional Predictive Studies

Predictive modelling is important for health data analysis and data-driven clinical decision-making. However, predictive studies are challenging to design optimally by hand when tens or even hundreds of features require selection, transformation, or interaction modelling. While complex machine learning models offer high performance, their "black-box" nature limits the clinical trust, transparency, and interpretability required for decision-making. We developed and evaluated an Exploratory AI Recommender that provides data-driven recommendations to improve predictive performance of existing interpretable statistical models. The developed framework uses flexible AI modelling to capture complex data patterns and explainable AI techniques to translate the patterns into three recommendation types: feature exclusion, non-linear terms, and feature interactions. We evaluated the framework by comparing predictive performance of a baseline (i.e., no interactions or non-linear terms) Cox Proportional Hazards (CPH) model against an augmented CPH incorporating recommendations suggested by our method. The primary analysis predicts the time to the first occurrence of a fall or related injury in 245,614 patients. Our method recommended excluding 23 features, including non-linear terms for two features, and including 221 suggested feature interactions. The C-index improved from 0.805 (95% CI 0.798-0.812) to 0.815 (95% CI 0.809-0.822), and so did calibration (intercept: -0.006 to 0.003; slope: 1.063 to 0.950). All recommendations were supported by existing literature. The method also proved effective on two additional public datasets, demonstrating wider applicability. The proposed Exploratory AI Recommender demonstrates the potential of explainable AI and data-driven study design to improve the process of developing, and the performance of high-dimensional transparent predictive models.
May 20, 2026

Objective-Induced Bias and Search Dynamics in Multiobjective Unsupervised Feature Selection

Unsupervised feature selection is commonly formulated as a multiobjective optimisation problem that jointly optimises subset quality and subset size. Yet the behaviour of this formulation depends critically on the choice of evaluation objective, the direction of subset-size regularisation, and the initialisation strategy. We study these factors in a controlled setting using a synthetic dataset with known informative, redundant, and irrelevant feature types. Six formulations are compared by combining three evaluation objectives: accuracy, silhouette score, and PCA reconstruction loss with subset-size minimisation or maximisation. The results show that formulation strongly affects both search dynamics and the quality of the resulting Pareto front. Silhouette-based formulations exhibit a strong bias toward trivial low-cardinality solutions and remain weak proxies for predictive performance. In contrast, the proposed PCA loss objective produces compact subsets with test accuracy comparable to subsets obtained by directly optimising supervised accuracy. Overall, the study shows that objective design is central to effective multiobjective unsupervised feature selection.
May 19, 2026

Multi-population Diversity-guided Genetic Algorithm for Feature Selection in Network Intrusion Detection

Network Intrusion Detection System is a critical means of ensuring cybersecurity. However, existing Genetic Algorithm-based feature selection methods face several limitations when dealing with high-dimensional redundant traffic features. For example, population diversity is difficult to maintain, and evolutionary operators lack guidance. To solve these problems, this study proposes the Multi-Population Diversity-Guided Genetic Algorithm (MPDGGA). First, we build a chained multi-population evolutionary structure. Second, we introduce a diversity-guided operator based on information gain ratio. Experiments on NSL-KDD, UNSW-NB15, and 9 UCI datasets show that the proposed model significantly outperforms four other advanced multi-population feature selection models. Across the 11 datasets, it attains the highest accuracy on 10 datasets and at least 2.26% of the features were selected.
May 19, 2026

BCI-sift: An automated feature selection toolbox for Brain Computer Interface applications

Advancements in clinical Brain-Computer Interfaces (BCIs) depend on precise and reliable signal interpretation. However, the high-dimensional and noisy nature of data captured from both implanted and non-implanted BCIs poses significant challenges, motivating the use of feature selection algorithms. We introduce BCI-sift (BCI Systematic and Interpretable Feature Tuning), a Python-based toolbox designed to streamline the application of diverse optimization algorithms to BCI datasets for identifying the most relevant features in machine learning tasks. Our scikit-learn-compatible toolbox (github.com/UMCU-RIBS/BCI-sift) simplifies feature selection in BCI tasks by integrating advanced optimization methods. We validated the toolbox on high-density electrocorticography (HD ECoG) data from eight able-bodied participants with 64-128 electrodes implanted over the sensorimotor cortex, who repeatedly spoke 12 words. BCI-sift identified informative neural features across electrode, temporal, and frequency dimensions. The anatomical locations of electrode selections were consistent across participants and aligned with known functional organization of the sensorimotor cortex. Relevant time points clustered around speech production, and the high-frequency band was identified as most informative, in line with prior work. Feature selection improved classification accuracy compared to using all features. BCI-sift provides an accessible and versatile platform for feature selection in BCI research, enabling improved decoding performance, automated feature analysis, and enhanced interpretability. While validated on HD ECoG data, the approach is broadly applicable to other BCI modalities. By enhancing classification accuracy and interpretability, BCI-sift addresses key challenges in developing efficient and transparent BCI systems.
May 17, 2026

A Feature-Driven Framework for Software Fault Prediction

Software fault prediction (SFP) is a critical task in software engineering, enabling early identification of faults in modules to improve software quality and reduce maintenance costs. This research investigates the combined effects of feature selection and parameter tuning on the performance of machine learning (ML) models for SFP. This study evaluates the interaction between feature selection methods, including correlation-based feature selection (CFS), recursive feature elimination (RFE), mutual information (MI), and L1 regularization, where hyperparameter tuning techniques such as grid search, randomized search, and genetic algorithm (GA) are used for optimization of ML algorithms, including random forest (RF), logistic regression (LR), and support vector machines (SVM) for optimized fault prediction performance. The combined application of CFS and GA yielded the highest accuracy, achieving 88.40% with RF, representing an improvement of 18% over baseline models without feature selection or tuning. Feature selection reduced dimensionality and identified critical attributes such as weighted methods per Class (WMC) and coupling between objects (CBO), while iterative parameter tuning optimized model alignment to these feature sets. Notably, the proposed methods demonstrated robustness, with minimal cross-validation variability (+-1.0%), and efficiency, reducing training times in univariate methods such as L1 regularization.