Self-Supervised Pre-Training

While echocardiography is essential for cardiovascular diagnosis, inherent speckle noise and low signal-to-noise ratio often lead to ambiguous semantic features and fragmented boundaries. These limitations significantly hinder the segmentation accuracy of deep learning models in complex clinical cases. Moreover, temporal motion of the heart plays a critical role in recognizing anatomical structures. To address these challenges, we designed a STLSF module which comprises a window-matching-based semantic correction component and a semantics-guided texture enhancement component. By leveraging local transition probability correlations to correct semantics and employing semantics-guided texture enhancement, the STLSF module effectively mitigates texture instability and ambiguous semantic interpretations caused by disadvantaged echocardiography quality. Additionally, to facilitate the encoder's adaptation to the intrinsic priors of ultrasound-specific imaging patterns, we propose a frequency-aware denoising pre-training method. The entire work builds a convolution-based network with locality inductive bias and long-range dependencies. Extensive experiments confirm our SOTA performance, achieving 93.87% Dice on CAMUS and 92.62% on EchoNet-Dynamic, with respective HD95 values of 3.29mm and 2.73mm.

The accuracy of existing leaf-wood segmentation methods for tree point clouds varies across forest types and sites. Self-supervised learning (SSL) on point clouds has improved the generalization of deep learning models for forestry point cloud tasks, including biomass regression and individual tree segmentation, but its applicability to leaf-wood segmentation remains untested. In this study, we pretrained Point-M2AE, a widely used SSL architecture for point clouds, on ShapeNet-55 augmented with 2,400 individual tree point clouds. For fine-tuning and inference, we used recursive voxel subdivision to handle the wide variation in point density across inputs, allowing the same model to operate at both individual-tree and plot scales without architecture change. Compared to the model without pretraining, the pretrained model improved wood IoU from 60.5% to 70.0% for needleleaf and from 69.7% to 76.3% for broadleaf trees. On a benchmark spanning four countries across three climatic zones, the pretrained model achieved the smallest cross-site variation and highest overall performance among compared methods (LeWos, CWLS, and PointTransformer). Plot-level segmentation maintained accuracy comparable to individual-tree performance, with mIoU of 84.7% for broadleaf and 77.7% for needleleaf plots, showing that the model generalizes across scales without additional finetuning. As a downstream test in tropical forests, where dense canopies make segmentation challenging, we applied our model and a quantitative structure model to estimate wood volume for 28 trees from Guyana, Indonesia, and Peru to assess whether the segmentation improvements from SSL pretraining translate into improved downstream performance. The resulting volume estimates achieved the lowest error among all methods tested (MAE = 2.40 m$^3$), less than half that of algorithmic baselines (LeWos: 5.94 m$^3$; CWLS: 5.27 m$^3$).

X-ray fluorescence (XRF) spectroscopy is a key modality for material analysis in cultural heritage. However, automated learning from XRF spectra remains challenging: XRF spectra are complex one-dimensional signals composed of sharp elemental peaks, broader structures, and background variations that are not taken into account by existing learning-based models. This paper introduces XRFormer, a transformer architecture tailored to XRF spectra through a multiscale convolutional tokenizer that injects locality and multi-resolution inductive biases before global self-attention. The tokenizer progressively reduces spectral resolution while increasing embedding dimensionality, and the resulting token sequence is processed by a standard transformer encoder. We further investigate self-supervised pretraining for XRF representation learning using Masked Spectral modeling (MSM) and a physics-informed Peak Presence Prediction (PPP) objective. Experiments on the Pigments Checker STANDARD v.5 dataset for pigment identification and unmixing show that XRFormer consistently outperforms ViT, SpectralFormer (with and without CAF), and a 1D-CNN baseline for pigment identification. For pigment unmixing, XRFormer achieves robust abundance estimation while maintaining significantly higher parameter efficiency than SpectralFormer, operating at a lower token resolution (128 vs. 512 tokens) and with less than half the number of parameters (1.5M vs. 3.37M). MSM yields consistent gains across both tasks, while PPP further enhances performance for both identification and unmixing when tuned with an appropriate peak prominence. These results highlight multiscale, modality-aware tokenization as an effective and parameter efficient foundation for transformer-based XRF modeling under data-limited conditions. A GitHub repository is provided at https://github.com/sofiane1010/XRFormer.

While decoders have rapidly scaled, encoders have remained largely unchanged since BERT. We revisit this disparity by frozen backbone evaluation via probing. Under this lens, the representations of BERT encoders become increasingly $\textit{unexploitable}$ by frozen probes, despite improved perplexity. The misalignment originates in BERT's flat design, which couples representation learning to the token reconstruction loss. We propose $\textbf{CrossBERT}$, a two-part architecture that separates the learning of high-quality encoded representations from the rigid grounding of token reconstruction. This design further enables high masking ratios ($\ge 50\%$) and gradient collection over all tokens via a $\textit{Complementary Masking Strategy}$, respectively increasing throughput by $1.5$ to $2\times$ and sample efficiency by $2\times$. Overall, CrossBERT demonstrates monotonic scaling and superior performance on MTEB(eng, v2) and frozen GLUE benchmarks.

Vision-Language-Action (VLA) models are fundamentally bottlenecked by the scarcity of expert demonstrations -- triplets of observations, instructions, and actions that are costly to collect at scale. We argue that this bottleneck stems from conflating two distinct learning objectives: acquiring physical competence (how to move) and acquiring semantic alignment (what to do). Crucially, only the latter requires language supervision. Building on this Decomposition Hypothesis, we propose Task-Agnostic Pretraining (TAP), a two-stage framework that first learns transferable motor priors from cheap, unlabeled interaction data -- including discarded off-task trajectories and autonomous robot play -- via a self-supervised Inverse Dynamics objective. A lightweight second stage then grounds these priors in language using minimal expert data. On the SIMPLER benchmark, TAP matches models trained on over 1M expert trajectories while using orders of magnitude less labeled data, yielding a 10% absolute gain over standard behavior cloning. On a real-world WidowX platform, TAP retains 25% success under camera perturbations where internet-scale baselines collapse to 0%, demonstrating that task-agnostic pretraining produces robust, transferable physical representations and offers a scalable path forward for Embodied AI.

Unsupervised pre-training on large-scale datasets has demonstrated significant potential for improving the sample efficiency and performance of Reinforcement Learning (RL). Given the large-scale action-free internet videos, existing methods utilize single-step transition prediction and image reconstruction to learn representations. However, these methods prefer to preserve large-proportion stationary information in the pixel space, neglecting small but crucial information. To preserve enough information in the representation, it is essential to pay equal attention to each element in videos. Specifically, we propose a temporal correlation space to distinguish each element. For implementation, we introduce the Multi-scale Temporal Contrastive Learning (MTCL) method to model multi-scale temporal correlations separately. This approach can balance the attention of different elements and yield more informative representations, effectively supporting policy learning in various downstream tasks. Experimental results demonstrate that our method improves sample efficiency and asymptotic performance across various downstream tasks.

Synthetic aperture radar automatic target recognition (SAR ATR) is critical for Earth observation and defense, but its practical deployment is constrained by scarce annotated training data. Self-supervised pre-training alleviates this label bottleneck, yet prevailing Transformer architectures incur prohibitive quadratic computational complexity, and conventional universal masking neglects the unique electromagnetic scattering properties intrinsic to SAR imagery. To address these limitations, we propose SAMBA (Scattering-Guided Bidirectional Mamba), an efficient self-supervised pre-training foundation model for SAR target interpretation. Our framework features three core innovations: (i) a linear-complexity Mamba encoder with a mid-sequence class token to mitigate computational bottlenecks; (ii) a three-level hierarchical Scattering-Guided Masked Autoencoder (SG-MAE) masking strategy guided by SAR physical priors, aligning the pretext task with SAR's intrinsic imaging mechanism; (iii) a lightweight SpatialMix feature interaction module to enhance cross-region feature fusion. We also design a two-stage cross-domain pre-training pipeline to optimize the overall pre-training process. Extensive evaluations demonstrate that SAMBA consistently delivers superior performance across all pre-training configurations, with substantially fewer parameters than both CNN and Transformer baselines. Compared with the default masking strategy in standard MAE, the proposed SG-MAE strategy further boosts the model's few-shot transfer capability. Benchmarking on seven downstream datasets covering classification and detection tasks shows SAMBA achieves state-of-the-art (SOTA) performance on most metrics, fully validating its robust generalizability across diverse SAR interpretation tasks. Source code and pre-trained weights are publicly available at https://github.com/mynswkk/SAMBA.

Self-supervised learning enables audio representations that transfer across domains and tasks. We present BEST-RQ-2, an evolution of BEST-RQ that retains frozen randomprojection-based discrete targets while introducing a two-step contextualize-then-predict pretraining scheme. A ViT context encoder processes only the unmasked spectrogram regions, and a lightweight predictor infers targets for the masked regions; the predictor is discarded after pretraining. Replacing the original Conformer encoder with a ViT shifts performance across domains, slightly reducing speech performance while improving music and environmental sounds, with comparable average scores. The main improvement comes from decomposing masked prediction into separate contextualization and prediction stages. On the X-ARES and XARES-LLM benchmarks, BEST-RQ-2 consistently outperforms one-stage baselines in overall transfer while keeping inference compute unchanged. Code and model checkpoints are publicly available.

Physiological signals such as EEG, ECG, and PPG are widely used in clinical monitoring. Recent self-supervised learning (SSL) methods offer an attractive way to leverage unlabeled recordings, yet they still fall short in practice. In particular, current SSL methods struggle across heterogeneous datasets, often distorting clinically meaningful structures or learning shortcuts from temporal and cross-channel redundancy. Consequently, existing SSL methods often deliver limited performance under linear probing, a lightweight adaptation setting that better matches real-world medical scenarios. Moreover, most Transformer-based SSL models encode a flattened spatiotemporal token sequence, incurring high computation and memory cost, and are typically developed within a single modality. To address these limitations, we present SPOTR (Spatio-temporal Pooling One-Token Reconstruction), a compress-reconstruct pretraining framework that introduces a single-token global bottleneck for physiological signals. SPOTR compresses each waveform into a single-token representation and reconstructs the signal conditioned only on this representation. Meanwhile, SPOTR introduces an efficient spatio-temporal compaction module to reduce computation and memory cost. Pretrained on 20 datasets spanning EEG, iEEG, ECG, and PPG, SPOTR consistently outperforms the strongest baseline under linear probing, improving average AUC by 18.49%, 21.71%, 17.86%, and 4.64%, respectively. Compared with a representative general-purpose time-series foundation model, SPOTR achieves around 78% lower latency and 52% lower peak GPU memory on average. The code can be found at https://github.com/5GYYYYY/SPOTR.

In this work, we introduce CoughPhase-CLR, a self-supervised learning framework designed to leverage the physiological phases of a cough for robust representation learning. Unlike generic contrastive frameworks, CoughPhase-CLR constructs positive pairs based on these specific acoustic phases. We pre-trained our model on approximately 40 hours of public cough audio and evaluated it across five downstream tasks, including COVID-19 detection, chronic obstructive pulmonary disease (COPD) state classification, and smoker status prediction. Our results demonstrate that cough-specific pre-training consistently outperforms standard random-cropping techniques when training on cough recordings. Additionally, we benchmarked a diverse set of state-of-the-art models on COPD state classification, highlighting the difficulty of this task. The best-performing models, pretrained on either general audio or respiratory sounds, achieved a UAR of 57%, failing to outperform the state-of-the-art performance of 84% UAR achieved using speech analysis.

Many machine learning applications rely on heterogeneous event streams to make predictions, either causally as events arrive or bidirectionally over complete sequences. We propose SOHET (Sequence Of Heterogeneous Events Transformer), a hierarchical architecture combining event-type-specific tabular encoders with temporal and type embeddings, processed by a causal or bidirectional transformer. We introduce three self-supervised pre-training objectives for the causal setting. On a proprietary large-scale real-world Booking.com fraud detection task with 17 event types, SOHET outperforms FlexTPP, NAPPT, and CIPPT by 5.8%. Pre-training yields an additional 2.6% gain and 2.4% faster convergence. On the EBES benchmark, bidirectional SOHET matches or exceeds the published best on 6 out of 8 tasks.

Leveraging Vision Foundation Models (VFMs) for camera-to-LiDAR knowledge distillation offers a promising solution to the scarcity of annotated data needed to represent the immense geometric and kinematic diversity of real-world autonomous driving (AD). However, current approaches typically treat VFMs as black-box teachers, relying exclusively on frame-wise feature similarity. Consequently, they do not fully exploit the teacher's layer-wise semantic structure and global context, as well as the rich spatiotemporal information inherent in LiDAR sequences. We propose HilDA, a self-supervised pretraining framework for LiDAR backbones that better captures the semantic what and geometric where needed for driving tasks. HilDA combines hierarchical distillation comprising multi-layer distillation for progressive semantic alignment and global context distillation for scene-level semantics, with a temporal occupancy diffusion objective promoting spatiotemporal consistency. Models pre-trained with HilDA achieve state-of-the-art results on cross-modal distillation benchmarks and outperform models trained via prior distillation approaches on 3D object detection, scene flow, and semantic occupancy prediction. Code available at: https://maxiuw.github.io/hilda.

Spatial prediction tasks are often limited by a lack of high-quality labelled ground-truth observations. To overcome this challenge, self-supervised pre-training is a possible solution, with contrastive learning dominant for location encoders. Those approaches usually align geographic coordinates with just one additional modality. We propose two multimodal contrastive learning architectures: Multimodal Embedding via Location Tying (MELT) and Sequential Alternating Location Training (SALT). These architectures expand this framework beyond two modalities by utilising unpaired geospatial data. Both methods are technically viable and match the performance of the strongest two-modality baseline (SATCLIP) across four downstream tasks. However, increasing the number of modalities does not consistently improve performance, suggesting that the chosen location encoder is the main limitation - the contrastive objective reaches its peak early, regardless of modality diversity or pre-training volume. MELT provides more stable training than SALT and presents a stronger foundation for future scaling.

Foundation models (FMs) trained on large datasets and fine-tuned on downstream tasks have emerged as a powerful paradigm in AI for science. Industrial FMs are typically trained using self-supervision with masking due to the lack of labels. In many scientific domains, accurate simulations are plentiful and facilitate large, labeled datasets. This opens up new possibilities for pre-training. We present a systematic comparison of pre-training methods using the OmniLearned High Energy Physics FM framework. We test supervised classification, flow-matching generation, and self-supervised masked particle modeling. All models are pre-trained on the JetClass dataset and fine-tuned on two representative downstream tasks, top jet classification and JetNet conditional generation. Among other observations, for classification tasks, we find that pure classifier pre-training is optimal when downstream labels and model capacity are plentiful, but combining it with self-supervised masked particle modeling (MPM) is uniquely powerful in the low-finetuning label regime. Flow matching-based generative pre-training seems to provide little benefit for downstream classification, and interestingly, for downstream generation, we find that flow matching must be in the pre-training objective to see a significant finetuning advantage, hinting at the orthogonality of classification and generation tasks. That is, for a model to transfer to both generative and classification downstream tasks, it must be pre-trained on both. This study provides a template for controlled scaling analysis of pre-training objectives for foundation models in simulation-based sciences.

Self-supervised foundation models have shown strong promise in medical imaging. However, existing MRI foundation-model studies have primarily emphasized segmentation and dense prediction tasks, while systematic investigation of self-supervised foundation models for MRI-based disease detection remains limited. In this work, we investigate two major self-supervised pretraining paradigms for MRI-based disease detection: reconstruction-based learning via Masked Autoencoders (MAE) and predictive representation learning via Joint Embedding Predictive Architectures (JEPA). We study the role of auxiliary objectives by introducing a novel spectral-domain reconstruction loss for MAE to enhance sensitivity to fine-grained anatomical structure, and by integrating variance--covariance regularization (VCR) within our JEPA framework to encourage decorrelated latent representations. Our models are pretrained on heterogeneous single-contrast MRI volumes in a contrast-agnostic setting, without modality concatenation. Across five downstream disease detection tasks, our results highlight the importance of self-supervised objective design for medical foundation model pretraining, demonstrating that the downstream benefit of each objective is determined by its relevance to the task's structure. Specifically, spectral regularization yields the largest improvements when the downstream discriminative signal is characterized by strong high-frequency anatomical structures, while covariance regularization is most beneficial when discriminative information spans multiple decorrelated feature dimensions. MAE with spectral-domain supervision consistently achieves superior downstream performance for MRI-based disease detection. These findings suggest that self-supervised objectives in medical imaging encode specific biases, and their downstream benefit is fundamentally conditioned on the task's structure.

Accurate prediction of absorption, distribution, metabolism, and excretion (ADME) properties is critical to drug discovery, but remains challenging because ADME endpoints are noisy, interdependent, and often data-limited. We propose a molecular graph-transformer pretraining framework that combines chemistry-specific self-supervision with contrastive mutual information machine learning (cMIM). Our method encodes molecular graphs into latent variables, reconstructs SMILES strings from the graph-derived latent codes, and augments the contrastive objective with domain-specific self-supervised chemistry tasks. Rather than treating these tasks as auxiliary regularizers with separately tuned loss weights, we formulate reconstruction, contrastive discrimination, and chemistry-specific supervision as unit-weighted log-probability factors in a single probabilistic latent-variable objective. For fine-tuning, we propose a multi-task GNN readout architecture with task-specific multilayer perceptron heads, preserving shared representation learning while mitigating negative transfer and improving the modeling of heterogeneous, nonlinear task relationships. Across Biogen, ExpansionRX, and ChEMBL-MT, the resulting Contrastive KERMT pretraining improves over the KERMT baseline by 7.6%, 9.9%, and 9.5% respectively (averaged over significantly-improved endpoints). Adding ADME-adjacent molecules to the pretraining corpus further improves transfer, and the contrastive component sharpens chemically meaningful latent neighborhoods.

Recently, masked skeleton reconstruction models have emerged as strong action representation learners, driving significant progress in self-supervised skeleton-based action recognition. However, existing state-of-the-art methods must predict an exceedingly large number of spatiotemporal patches, significantly prolonging training time. Besides, by treating all spatiotemporal regions equally during reconstruction, these models are distracted from learning the critical motion patterns that underlie action semantics. To address these challenges, we propose Adaptive Masked Reconstruction (AMR), a faster and stronger pre-training framework. We first decouple the decoder from the encoder, enabling flexible prediction of larger spatiotemporal patches and dramatically reducing reconstruction complexity. Given that larger patches contain more complex information, which is challenging to predict and consequently degrades performance, we accordingly introduce an adaptive guidance module. This module identifies regions of high motion informativeness, guiding the model to focus on the most discriminative parts of each patch and alleviating reconstruction difficulty. Experiments on NTU RGB+D 60, NTU RGB+D 120, and PKU-MMD datasets demonstrate that AMR not only accelerates pre-training substantially but also improves downstream recognition accuracy, surpassing current state-of-the-art approaches.

Classification tasks require annotated data, which can often be expensive, time-consuming, or even unfeasible to collect. This is the case of the medical domain, where large datasets often have few annotated examples. To address this, we propose DecSelfMask (Decoder Self-learning by Masking), an approach to enhance decoder-only performance on classification tasks. We build on common self-learning approaches by leveraging a model to create training examples from unlabeled data, and propose a novel relevance-guided masking strategy. We use relevance attribution methods to determine what portions of unannotated texts are relevant for a task. We then create self-supervised training examples by masking out those portions, training the model to reconstruct them via next-token-prediction. We hypothesize that those examples convey knowledge about the structure and semantics of unannotated data that can be useful for downstream performance. We test our approach on 136 tasks from a collection of 1.9M clinical notes from an Italian hospital. We quantify DecSelfMask's impact on downstream tasks on 5 models of different scales and families, including a probing analysis. Experiments show consistent gains, outperforming the base models (+9.1 points in Macro F1), continual pretraining (+6.3), synthetic label generation (+12.5), as well as common baselines. The results show that relevance attribution can serve as a powerful source of supervision for decoder learning from unlabeled data, beyond existing methods.

MRI preprocessing defines the input distribution seen by brain MRI foundation models, yet it is usually treated as routine data cleaning rather than a modeling choice. We ask how much preprocessing is worth its computational cost for self-supervised 3D MRI pretraining. Keeping the corpus, 3D ViT backbone, masking protocol, and downstream evaluations fixed, we compare a graded P0-P7 preprocessing spectrum for masked autoencoding (MAE) and joint-embedding predictive learning (JEPA) on 20,000 heterogeneous brain MRI volumes, then transfer the encoders to IDH prediction, MCI classification, brain age regression, and GLI/PED tumor segmentation. The results do not support a simple "more is better" rule. P0/P1 are numerically unstable, making P2 the lowest-cost feasible level; beyond P2, choosing the best feasible preprocessing level improves aggregate utility by only 3.4 percentage points for MAE and 1.8 percentage points for JEPA, with most paired gains statistically unresolved. Stronger preprocessing is beneficial only in selected regimes: IDH improves modestly, AGE and GLI/PED are often near or best at P2, and MCI shows the clearest empirical P7 gain. Cross-level MCI transfer further shows that much of the P7 advantage can be recovered by applying stronger preprocessing downstream, without requiring P7 throughout pretraining. These findings recast MRI preprocessing as a downstream-aware cost-utility decision rather than a default escalation pipeline. Code is available at https://github.com/PangJiangShuan/PreBrain.

Recent breakthroughs in self-supervised learning (SSL), such as the Latent-Euclidean Joint-Embedding Predictive Architecture (LeJEPA), alongside successes in integrating visual encoders with language models, have driven the demand for adaptable, high-capacity vision encoders in Computed Tomography (CT). In this work, we explore 2D slice-based architectures as a flexible alternative to native 3D models for processing volumetric CT data. Using the CT-RATE dataset, we trained DALE-CT (Depth-Aware Latent-Euclidean Computed Tomography), a 2D model family built entirely from scratch using LeJEPA, and compared its performance against a continually pre-trained DINOv2 baseline. To enhance representation quality, we developed a novel 3D depth-aware pre-training strategy anchored by dense auxiliary supervision from both automated anatomical masks and human-annotated abnormalities. Under linear probe evaluation with Multiple Instance Learning (MIL) for multi-abnormality detection, the frozen backbone of this dual-supervised model (DALE-CT-2S) achieves a Macro AUROC of 0.833. This performance demonstrates near-parity with state-of-the-art 3D vision-language models, achieved entirely from scratch with significantly less data and no textual supervision. To ensure reproducibility, all training code, evaluation scripts, and model weights have been made publicly available.

Wireless foundation models have emerged as a promising alternative to building separate models for each wireless task. However, existing approaches rely on masked input reconstruction, which can bias representations toward low-level signal details. In this paper, we propose LatentWave, a wireless foundation model pretrained using a Joint-Embedding Predictive Architecture (JEPA) on diverse wireless spectrograms and channel state information (CSI). By predicting masked regions in latent space, LatentWave learns representations that are more transferable out of the box across diverse downstream tasks. The proposed architecture employs per-channel patch embeddings with stochastic channel sampling during pretraining, allowing it to process variable antenna counts and improving usability across heterogeneous wireless configurations. We evaluate LatentWave on four downstream tasks: RF signal classification, 5G NR positioning, beam prediction, and LoS/NLoS classification, comparing against a masked-modeling baseline (WavesFM) pretrained on the same data. Additionally, we show that the masking geometry introduces a task-dependent inductive bias: frequency masking strongly favors channel-related tasks such as positioning and beam prediction, while region masking better preserves discriminability for signal classification.

Printed circuit board (PCB) defect detection is an essential part of automated optical inspection (AOI); yet it remains challenging in practice because many defects are tiny, low-contrast, and embedded in dense circuit backgrounds. To address these issues, this paper presents a two-phase PCB defect detection framework that combines structure-guided mixed masked pretraining with spatial continuity regularization. In the pretraining stage, we design a sparse convolutional masked pretraining scheme to exploit unlabeled PCB images, where structure-guided mixed masking is used to construct informative masked inputs. The sparse convolutional reconstruction pipeline suppresses invalid responses from masked regions and enables the detector backbone to infer missing PCB structures from visible conductive patterns, thereby learning PCB structural priors. In the fine-tuning stage, the pretrained backbone is transferred to the downstream defect detection task. For the task, a spatial continuity regularization term is introduced during fine-tuning. This term constrains dispersed positive predictions assigned to the same defect instance and promotes more compact localization on elongated defect regions. Experiments on the DsPCBSD+ dataset show that the proposed method achieves 85.5% mAP0.5 and 52.3% mAP0.5:0.95, outperforming several strong baseline detectors. Ablation studies and qualitative results further confirm the effectiveness of the proposed framework for robust PCB defect detection in industrial AOI scenarios.

Real-world domains often contain heterogeneous tables whose headers vary while their underlying attribute semantics are shared, making it difficult to induce domain-specialized semantics from table-local evidence alone. Existing encoders model parts of this problem, but often underuse column-level value distributions and apply uniform objectives across attributes with different semantic roles. We propose NAVI, a segment-centric pretraining framework that treats each header-value pair as the unit for aggregating schema-level structural evidence and column-level distributional evidence. We realize this design through Masked Segment Modeling and Entropy-driven Segment Alignment, which jointly enforce structured header-value coupling and semantic alignment across stable and instance-specific attributes. Experiments on heterogeneous in-domain tables show improved reconstruction, semantic consistency, and downstream utility across evaluation settings overall.

Fast and accurate prediction of crystal properties is a central challenge in new materials design. Graph neural networks and Transformer-based models have emerged as powerful tools for this task due to their ability to encode the local structural environment of atoms within a crystal. However, these models are data-hungry, and in practice, labeled data for crystal properties are scarce. Pretraining-finetuning strategies, particularly those based on diffusion models, have shown promise in addressing these limitations. In this work, we introduce a novel latent diffusion based pretraining framework, CrysLDNet, designed to mitigate data scarcity. Our approach integrates a Variational Autoencoder (VAE) with a diffusion model during the pretraining stage. The VAE encoder maps 3D crystal structures into a smooth latent space within which the diffusion process is applied. This latent diffusion pretraining enables the graph encoder to effectively capture structural and chemical semantics from large-scale unlabeled data, which can then be finetuned for specific property prediction tasks. Comprehensive experiments on popular DFT datasets for property prediction reveal that CrysLDNet significantly outperforms both training-from-scratch and pretrained baselines, with improvements of 4.26% and 4.90% on the JARVIS and MP datasets, respectively. Additionally, the learned representations remain robust in sparse-data conditions and are expressive enough to correct DFT errors when finetuned with limited experimental data. Code is available at: https://github.com/shrimonmuke0202/CrysLDNet.git.

Pathology foundation models are pretrained on large streams of WSI-derived patches, while supervision during data construction is often slide-level, sparse, or heterogeneous. This mismatch makes it difficult to understand and control which biological patterns enter the pretraining data. We propose SlideCheck, a lightweight pretraining data guidance tool built on frozen pathology foundation model patch features. Rather than serving as a standalone patch diagnostic model, SlideCheck provides explicit abnormality and malignancy scores for organizing, filtering, and auditing pathology pretraining data. SlideCheck uses a dual-head MLP to separately model broad abnormal morphology and malignant evidence. A regularized feature-space scorer provides a supervised anchor for patch-level evidence estimation, while score-attention agreement combines patch scores with WSI-level MIL attention to mine high-confidence pseudo labels. The same scores are then used to construct broad-positive ViT pretraining subsets, where a patch is selected if either abnormality or malignancy evidence exceeds a threshold. Experiments show that SlideCheck-defined data distributions influence the downstream behavior of self-supervised ViT pretraining, indicating that biological composition is an important controllable factor in pathology foundation model development. Curated subsets can approach full-data performance, suggesting that explicitly scored patch pools may support more efficient and auditable pretraining data construction. These findings position SlideCheck as a data guidance and auditing layer for transforming large, undifferentiated patch pools into controllable and reusable pretraining datasets.

Masked language modeling has become a standard pretraining objective for training encoder-based language models. In this approach, certain tokens in the input are masked, and the model learns to predict them using the surrounding context. This process enables the model to capture both syntactic and semantic properties of language. Conventionally, the tokens selected for masking are chosen at random, which may not always yield the most effective learning signals. In this work, we examine a token masking strategy based on entropy distribution. We use the model's entropy over token predictions to identify which tokens should be masked. This method aims to target tokens that are more informative and uncertain to improve the training efficacy. We also propose a novel self-masking approach that enhances training efficiency without relying on an external reference model. Experimental results demonstrate that our method achieves an average performance improvement of 5% in GLUE scores compared to the baseline. Further, we experiment with combining knowledge distillation with entropy masking, resulting in the best overall results.

Self-Supervised Learning (SSL) has emerged as a powerful paradigm to mitigate the reliance on large, annotated datasets, a common bottleneck in medical image analysis. However, standard SSL methods, which rely on simple geometric and color augmentations, may fail to capture the fine-grained, complex textural details necessary for classifying subtle pathologies. This paper introduces Chaos-SSL, a novel two-stage framework for medical image classification. In the first stage, we propose a new self-supervised pre-training strategy that leverages 1D chaotic maps (Logistic, Tent, and Sine) as a complex, non-linear augmentation for contrastive learning. We hypothesize that these chaotic transformations create ``harder'' and more semantically-rich views, forcing a network to learn robust representations of fine-grained medical textures. In the second stage, we introduce an attention-based fusion model that dynamically combines the specialized features from our Chaos-SSL model with the general-purpose features of a larger, ImageNet-pre-trained model. We validate our method on two public datasets: ISIC 2018 (skin lesions) and APTOS 2019 (diabetic retinopathy). Our results demonstrate that the Chaos-SSL model pre-trained with a Tent map for 30 epochs, followed by attention fusion, achieves performance fully competitive with the state-of-the-art, yielding an accuracy of 0.9261 on ISIC 2018 and 0.8726 on APTOS 2019. This significantly outperforms existing SSL methods, including several recent approaches.

Accurately predicting crystal properties is critical for accelerating materials discovery, but it is often limited by scarce labeled data and costly theoretical calculations. To alleviate this, we propose UNATE (Unsupervised Atomic Embedding), a framework that leverages structural information extracted from unlabeled crystal structures. UNATE integrates an unsupervised denoising autoencoder with self-supervised contrastive learning to learn robust atomic representations, which are then used as input features for downstream property prediction. Experimental results show that replacing raw atomic numbers with UNATE-pretrained node embeddings yields a 2.7% improvement over the full-data baseline. Notably, the benefits become more pronounced in scenarios with limited labeled data, reaching improvements of up to 10% when only 25% of the labeled data is used.

Standard next-token prediction (NTP) supervises language models solely through discrete labels in the output logit space. We argue that this sparse one-hot supervision leaves the latent representation space under-constrained, allowing hidden states to drift into degenerate and anisotropic configurations that can limit generalization. To address this issue, we propose Next Implicit Token Prediction (NITP), which augments discrete prediction with dense continuous supervision directly in the representation space. NITP trains the model to predict the implicit semantic content of the next token, using shallow-layer representations from the same model as stable self-supervised targets. We provide theoretical analysis showing that NITP regularizes the optimization landscape by mitigating under-constrained degrees of freedom and encouraging a compact, structured representation geometry. Empirically, across dense and MoE models ranging from 0.5B to 9B parameters, NITP consistently improves downstream performance with negligible computational overhead. On a 9B MoE model, NITP achieves a 5.7% absolute improvement on MMLU-Pro, along with gains of 6.4% on C3 and 4.3% on CommonsenseQA, with approximately 2% additional training FLOPs and no additional inference cost. Our implementation is available at https://github.com/aHapBean/NITP.

Mueller matrix imaging provides rich, physically meaningful contrast for biomedical tissue analysis, but supervised learning is hindered by scarce dense annotations and strong domain shifts across specimens and acquisition settings. We introduce MuellerPT, a physics guided pre-training approach that learns transferable dense representations by predicting Lu-Chipman decomposition maps from per-pixel 4x4 Mueller matrices. To scale pre-training, we collected a new large Multispectral Animal Polarimetric Organ dataset (MAP-Org). The pre-trained encoder is adapted with a segmentation head for grey vs. white matter segmentation in lamb brain. A classification head is used for colorectal cancer vs. non-cancer classification. Both segmentation and classification are evaluated across few-shot learning scenarios. In segmentation, MuellerPT improves label efficiency and cross specimen transfer compared to models without pre-training, achieving an absolute DICE gain of over 20% compared to the baseline trained from scratch when using 5% of the training data. In classification, MuellerPT also enhances label efficiency, improving overall accuracy by 8% compared to the baseline when using 1% of the training data. We demonstrate MuellerPT's robustness to domain shift with a qualitative evaluation of its predicted Lu-Chipman maps on an ex vivo human oesophagus sample. These results suggest that predicting Lu-Chipman decomposition is an effective and practical pretext task for robust biomedical inference from Mueller polarimetry and can pave the way for future work on label efficient Mueller imaging.