Thin-Structure Segmentation

Thin, elongated structures are particularly sensitive to connectivity errors, as even a few local segmentation mistakes can disrupt otherwise continuous paths. Existing skeleton-based objectives typically supervise fixed centerline locations and do not account for alternative local routes that may restore connectivity. We propose TRACE, a topology-aware, prediction-adaptive objective that uses a target skeleton to define required local connections. For each connection, TRACE identifies the easiest valid reconnection under the current prediction and jointly supervises its bottleneck with the corresponding skeleton point. The supervision thus adapts to the evolving prediction rather than remaining fixed to the centerline. We further introduce a topology-aware skeleton carrier that preserves both foreground and class-specific topology, enabling reliable definition of these connections. Extensive experiments across six 2D and 3D benchmarks show that TRACE improves connectivity and topology while maintaining strong segmentation accuracy with low training overhead. Code will be released upon acceptance.

Accurate segmentation of thin curvilinear structures is vital for various real-world applications, from vessel analysis to road extraction. Yet their intricate geometry makes even minor pixel-wise errors enough to break the global topology, and this structural fragility turns severe domain shifts into catastrophic failures. The difficulty is most acute under cross-modality gaps, where the imaging process itself differs fundamentally between source and target. While test-time adaptation (TTA) offers a practical source-free remedy, existing methods adapt feature statistics and confidence, neither of which constrains connectivity, and thus degrade under such extreme gaps. To address this, we propose Skeleton-Guided Progressive Test-Time Adaptation (SGP-TTA). Progressive Batch Normalization (ProgBN) shifts normalization from frozen source statistics toward current target estimates under a sample-count schedule, so that the source-target balance follows the stage of adaptation rather than a fixed coefficient. Consensus Skeleton Recall (CSR) then derives a structural target from geometrically aligned multi-view predictions and updates only the BN affine parameters to preserve connected structures. Extensive experiments show that SGP-TTA consistently outperforms existing TTA methods in topological connectivity, with the largest margins under cross-modality shift. The project page is available at https://boa-jang.github.io/SGP-TTA.

Segmenting slender curvilinear structures such as retinal vessels, cracks, and roads demands topological correctness, as even a single-pixel discontinuity can fragment a continuous network and invalidate downstream analysis. Under standard binary-mask supervision, models optimized for pixel-level overlap frequently produce topologically broken predictions. We trace this to a fundamental mismatch: pixel-wise losses distribute gradients uniformly, yet connectivity hinges on a sparse set of bottleneck pixels. These pixels are vastly outnumbered by thick structures and background, rendering their aggregate gradient contribution negligible. We term this phenomenon topological gradient starvation (TGS). To address it, we propose Widest-Path Reachability Fields (WPRF), a differentiable Max-Min reachability objective that redirects gradient flow to connectivity bottlenecks. The module is plug-and-play, backbone-agnostic, and incurs no inference overhead. WPRF implements a differentiable Max-Min objective via dynamic programming on a domain-restricted graph, coupled with a bottleneck-aware observation term that balances gradient contributions across varying structures. Compared to prior topology-aware losses that rely on post-hoc skeletonization or homology computation, WPRF directly optimizes end-to-end reachability via differentiable Max-Min algebra, enabling gradient flow to concentrate on connectivity bottlenecks without auxiliary structures. We introduce OMVIS, a new oral microvessel segmentation dataset. Experiments across nine architectures and six datasets validate the bottleneck-focused gradient routing mechanism. WPRF improves 87% of experiments with fixed hyperparameters and achieves clDice gains of 7.2 percentage points on structurally fragile datasets.

Curvilinear object segmentation, including vessels and cracks, is challenging due to extreme spatial sparsity and topological fragility, where small local errors can cause severe structural disconnections. Meanwhile, modern segmentation pipelines increasingly rely on strong but hard-to-modify foundation encoders whose heavy downsampling limits fine structural recovery. Motivated by this, we focus on the post-encoder stage and study two recurring and actionable failure modes: a reconstruction bottleneck in high-resolution feature restoration and a decision bottleneck in binarization. We present PEPA, a lightweight Post-Encoder Plug-in Adapter for 2D curvilinear segmentation pipelines with accessible decoder/head features and target, query, or class descriptors. PEPA couples (i) Target-Conditioned Snake Upsampling (TCSU), which uses target-conditioned continuous snake-like sampling to better recover thin and tortuous structures during upsampling, and (ii) Target-Adaptive Differentiable Thresholding (TADT), which predicts target-specific thresholds and optimizes a soft-threshold surrogate with explicit safeguards against trivial bias shifting. Under this post-encoder interface, PEPA can be attached to both prompt-based decoders and conventional dense predictors. Experiments on five medical and industrial benchmarks show that adding PEPA to frozen-encoder baselines yields consistent improvements, with gains in topological connectivity (clDice) typically exceeding those in region overlap (IoU), indicating improved structural continuity. With only $\sim$0.26M additional parameters, PEPA offers a practical post-encoder enhancement for structure-centric segmentation.

Thin-structure segmentation--power lines, cracks, lane markings at 1-3 pixel width--requires preserving connectivity that standard representations preclude: patching severs continuous structures and conventional superpixels merge thin targets into background before classification. Topology-aware losses penalize connectivity breaks at the objective level but cannot recover what the representation has already destroyed. We propose SEMIR, a framework that replaces the pixel lattice with a parameterized graph minor whose contraction map preserves thin-structure connectivity under the contraction criterion. The minor collapses millions of pixels into tens or hundreds of boundary-aligned supernodes, enabling full-resolution inference without patching at scales demonstrated up to 21 MP in this paper; a lightweight GNN classifies the reduced graph and an exact map lifts predictions to pixel resolution. One pipeline--identical architecture, features, loss, and GNN hyperparameters across all dataset--matches or exceeds domain-specific baselines on TTPLA (power lines), CrackSeg9k (pavement cracks), and SkyScapes Lane (aerial markings) on Dice, IoU, and Boundary F1 while reducing mask fragmentation by at least 4.6x relative to SLIC at matched inference.

Accurate segmentation of thin, tortuous anatomical structures, such as retinal vessels, cerebral vasculature, and facial wrinkles, remains challenging due to low contrast, frequent discontinuities, and severe class imbalance. Although recent convolutional and Transformer-based models have improved performance, they often yield fragmented predictions and fail to recover fine branches. We propose CSWinUNETR, a general-purpose backbone for 2D and 3D thin-structure segmentation. It employs cross-shaped stripe self-attention to model long-range principal-axis context and incorporates cyclic shifts to enhance information exchange across stripes. To better preserve fine-grained details, we further introduce a detail-enhanced multi-scale self-attention module that aggregates contextual features from multi-resolution representations. In addition, we propose sparse-control dynamic snake convolution, which reconstructs reliable dense curvilinear kernels from sparsely predicted control points to better follow tortuous geometry. Extensive experiments on four benchmarks across ophthalmology, neurovascular imaging, and dermatology demonstrate that CSWinUNETR consistently outperforms state-of-the-art methods without task-specific post-processing or topology-aware losses. The code is available at https://github.com/labhai/CSWinUNETR.

Recent crack segmentation methods often follow generic semantic segmentation designs, using stronger backbones, hybrid CNN-Transformer-Mamba encoders, and auxiliary enhancement branches. Although effective, this raises whether stronger generic feature mixing is the most suitable direction for crack segmentation. We instead formulate crack segmentation as sparse structural recovery. Cracks have limited category-level semantics but strong morphological regularities, being thin, sparse, anisotropic, locally fragmented, and easily confused with textures or shadows. Thus, the key bottleneck lies in preserving weak structural evidence, recovering directional continuity, and suppressing background coupling. We propose RIFT, a compact family of morphology-aligned crack segmentation models. Rather than compressing a complex generic architecture, RIFT is simple by design, preserving local evidence, aggregating cooperative directional continuity, and restoring crack structures through lightweight multi-scale fusion. Experiments on four public benchmarks show that RIFT achieves the best or tied-best results across the 16 main metrics against reproduced representative baselines. RIFT-B gives the strongest overall accuracy, while RIFT-T provides the best deployment efficiency with only 0.47M parameters and high inference speed. Topology-aware evaluation, ablations, transfer experiments, and visualizations further verify that task-aligned simplicity can match or surpass complex hybrid architectures when its inductive bias fits crack morphology. Code: https://github.com/xauat-liushipeng/RIFT

Autonomous Unmanned Aerial Vehicles (UAVs) must reliably detect thin obstacles such as wires, poles, and branches to navigate safely in real-world environments. These structures remain difficult to perceive because they occupy few pixels, often exhibit weak visual contrast, and are strongly affected by class imbalance. Existing segmentation methods primarily target coarser obstacles and do not fully exploit the complementary multimodal cues needed for thin-structure perception. We present EDFNet, a modular early-fusion segmentation framework that integrates RGB, depth, and edge information for thin-obstacle perception in cluttered aerial scenes. We evaluate EDFNet on the Drone Depth and Obstacle Segmentation (DDOS) dataset across sixteen modality-backbone configurations using U-Net and DeepLabV3 in pretrained and non-pretrained settings. The results show that early RGB-Depth-Edge fusion provides a competitive and well-balanced baseline, with the most consistent gains appearing in boundary-sensitive and recall-oriented metrics. The pretrained RGBDE U-Net achieves the best overall performance, with the highest Thin-Structure Evaluation Score (0.244), mean IoU (0.219), and boundary IoU (0.234), while maintaining competitive runtime performance (19.62 FPS) on our evaluation hardware. However, performance on the rarest ultra-thin categories remains low across all models, indicating that reliable ultra-thin segmentation is still an open challenge. Overall, these findings position early RGB-Depth-Edge fusion as a practical and modular baseline for thin-obstacle segmentation in UAV navigation.

Most deep learning pipelines for retinal vessel segmentation resize fundus images to satisfy GPU memory constraints and enable uniform batch processing. However, the impact of this resizing on thin vessel detection remains underexplored. When high resolution images are downsampled, thin vessels are reduced to subpixel structures, causing irreversible information loss even before the data enters the network. Standard volumetric metrics such as the Dice score do not capture this loss because thick vessel pixels dominate the evaluation. We investigated this effect by training a baseline UNet at multiple downsampling ratios across five fundus datasets (DRIVE, STARE, CHASE_DB1, HRF, and FIVES) with native widths ranging from 565 to 3504 pixels, keeping all other settings fixed. We introduce a width-stratified sensitivity metric that evaluates thin (half-width <3 pixels), medium (3 to 7 pixels), and thick (>7 pixels) vessel detection separately, using native resolution width estimates derived from a Euclidean distance transform. Results show that for high-resolution datasets (HRF, FIVES), thin vessel sensitivity improves monotonically as images are downsampled toward the encoder's effective operating range, peaking at processed widths between 256 and 876 pixels. For low-to-mid resolution datasets (DRIVE, STARE, CHASE_DB1), thin vessel sensitivity is highest at or near native resolution and degrades with any downsampling. Across all five datasets, aggressive downsampling reduced thin vessel sensitivity by up to 15.8 percentage points (DRIVE) while Dice remained relatively stable, confirming that Dice alone is insufficient for evaluating microvascular segmentation.

The segmentation of thin linear structures is inherently topology allowbreak-critical, where minor local errors can sever long-range connectivity. While recent State-Space Models (SSMs) offer efficient long-range modeling, their isotropic serialization (e.g., raster scanning) creates a geometry mismatch for anisotropic targets, causing state propagation across rather than along the structure trajectories. To address this, we propose FGOS-Net, a framework based on frequency allowbreak-geometric disentanglement. We first decompose features into a stable topology carrier and directional high-frequency bands, leveraging the latter to explicitly correct spatial misalignments induced by downsampling. Building on this calibrated topology, we introduce frequency-aligned scanning that elevates serialization to a geometry-conditioned decision, preserving direction-consistent traces. Coupled with an active probing strategy to selectively inject high-frequency details and suppress texture ambiguity, FGOS-Net consistently outperforms strong baselines across four challenging benchmarks. Notably, it achieves 91.3% mIoU and 97.1% clDice on DeepCrack while running at 80 FPS with only 7.87 GFLOPs.

Segmenting thin structures like infrastructure cracks and anatomical vessels is a task hampered by topology-sensitive geometry, high annotation costs, and poor generalization across domains. Existing methods address these challenges in isolation. We propose FMS$^2$, a flow-matching framework with two modules. (1) SegFlow is a 2.96M-parameter segmentation model built on a standard encoder-decoder backbone that recasts prediction as continuous image $\rightarrow$ mask transport. It learns a time-indexed velocity field with a flow-matching regression loss and outputs the mask via ODE integration, rather than supervising only end-state logits. This trajectory-level supervision improves thin-structure continuity and sharpness, compared with tuned topology-aware loss baselines, without auxiliary topology heads, post-processing, or multi-term loss engineering. (2) SynFlow is a mask-conditioned mask $\rightarrow$ image generator that produces pixel-aligned synthetic image-mask pairs. It injects mask geometry at multiple scales and emphasizes boundary bands via edge-aware gating, while a controllable mask generator expands sparsity, width, and branching regimes. On five crack and vessel benchmarks, SegFlow alone outperforms strong CNN, Transformer, Mamba, and generative baselines, improving the volumetric metric (mean IoU) from 0.511 to 0.599 (+17.2%) and reducing the topological metric (Betti matching error) from 82.145 to 51.524 (-37.3%). When training with limited labels, augmenting SegFlow with SynFlow-generated pairs recovers near-full performance using 25% of real annotations and improves cross-domain IoU by 0.11 on average. Unlike classical data augmentation that promotes invariance via label-preserving transforms, SynFlow provides pixel-aligned paired supervision with controllable structural shifts (e.g., sparsity, width, branching), which is particularly effective under domain shift.

The binary segmentation of whiteboard strokes is hindered by extreme class imbalance, caused by stroke pixels that constitute only $1.79$ of the image on average, and in addition, the thin-stroke subset averages $1.14$ in the foreground. Standard region metrics (F1, IoU) can mask thin-stroke failures because the vast majority of the background dominates the score. In contrast, adding boundary-aware metrics and a thin-subset equity analysis changes how loss functions rank and exposes hidden trade-offs. We contribute an evaluation protocol that jointly examines region metrics, boundary metrics (BF1, B-IoU), a core/thin-subset equity analysis, and per-image robustness statistics (median, IQR, worst-case) under seeded, multi-run training with non-parametric significance testing. Five losses -- cross-entropy, focal, Dice, Dice+focal, and Tversky -- are trained three times each on a DeepLabV3-MobileNetV3 model and evaluated on 12 held-out images split into core and thin subsets. Overlap-based losses improve F1 by more than 20 points over cross-entropy ($0.663$ vs $0.438$, $p < 0.001$). In addition, the boundary metrics confirm that the gain extends to the precision of the contour. Adaptive thresholding and Sauvola binarization at native resolution achieve a higher mean F1 ($0.787$ for Sauvola) but with substantially worse worst-case performance (F1 $= 0.452$ vs $0.565$ for Tversky), exposing a consistency-accuracy trade-off: classical baselines lead on mean F1 while the learned model delivers higher worst-case reliability. Doubling training resolution further increases F1 by 12.7 points.