Tree Species Classification

Tree species recognition supports forest inventory and biodiversity monitoring but still depends on scarce taxonomic expertise. Bark is visible year-round at ground level, yet bark recognition has concentrated on temperate floras and on large ImageNet-pre-trained backbones. We address both gaps. First, we release BarkBD, a bark dataset for Bangladesh: 14,258 uncropped smartphone photographs of 20 native species across four districts and three weather conditions, with a fixed stratified split. Second, we propose BarkNet-Lite, a 2.96M-parameter network trained from random initialisation, pairing a multi-scale texture pathway with a parallel colour-aware pathway. Over five seeds it reaches 96.64+-0.66%accuracyunderstrict single-image inference, within 2.3 points of nine ImageNet-pre-trained backbones fine-tuned under an identical protocol and within one seed-level standard deviation of the smallest ofthem, andtransfers to public benchmarks (95.86% on BarkVN-50, 92.85% on BarkNet 1.0). Grad-CAM, validated by faithfulness and weight-randomisation checks, confirms its decisions rest on bark structure rather than background. The exported single-precision model classifies one photograph in 15.34ms on a commodity smartphone.

We map tree species across Denmark using National Forest Inventory plots and EO data, while evaluating the potential of foundation models for large-scale forest characterization. We compare two alternative input representations for tree species classification: (i) manually engineered spectral-temporal features (STF) derived from multi-temporal Sentinel-1 and Sentinel-2 observations, and (ii) embeddings generated by the EO FMs TESSERA and AlphaEarth. Both representations are complemented with canopy height information. Random forest, XGBoost, and Multi-Layer Perceptron (MLP) classifiers are evaluated for all input representations, with separate assessments for pure and mixed forest stands. The STF-based MLP achieves the highest classification performance, yielding macro F1 scores of 0.843 and 0.653 for pure and mixed stands, respectively. The MLP trained on TESSERA embeddings delivers competitive performance for pure stands, achieving results within 1.1 percentage points of the best-performing model. TESSERA consistently outperforms STF-based models when fewer than approximately 25% of training plots are available, demonstrating a substantial advantage under limited training data. Multi-year observations systematically improve classification accuracy relative to single-year inputs, while ablation experiments reveal the complementary contributions of Sentinel-1 backscatter, spectral indices, and canopy height data. The best-performing model is subsequently applied at the national scale to generate a 10 m tree species map of Denmark. Area-adjusted validation indicates an overall map accuracy of 79.9%. The resulting map, released as an open-access product, is the first high-resolution national tree species map of Denmark and provides a valuable resource for forest monitoring, ecological research, and land management applications.

The beekeeping sector holds significant potential for livelihood diversification among the agropastoral communities in Kenya. Melliferous tree species play a critical role by providing essential nectar sources for bees. However, limited knowledge of their precise spatial distributions constrains the full development of beekeeping. One-class classification (OCC) offers a practical solution for detecting single target species without requiring extensive labeled data from other classes. Although existing OCC methods perform well in trained domains, the generalization capability to unseen domains remains limited due to domain shift. To address these challenges, this study proposes a hyperspectral unsupervised domain adaptation OCC framework (HyUDA-One) for tree species mapping using airborne hyperspectral imagery and laser scanning data. The spatial-spectral regularized pseudo-positive learning was designed to mitigate domain shift and improve model generalizability. The effectiveness of HyUDA-One was demonstrated by mapping three key melliferous tree species in two savanna landscapes in southern Kenya. The results show that HyUDA-One significantly improves performance in unlabeled domains. The F1-scores of 0.788, 0.845, and 0.768 were achieved for Senegalia mellifera, Vachellia tortilis, and Commiphora africana in the trained domain, respectively. In the untrained domain, the F1-scores of Senegalia mellifera and Vachellia tortilis were 0.756 and 0.884, respectively. The distribution maps revealed the spatial patterns of these melliferous tree species and the nectar source availability, offering an important reference for sustainable beekeeping development in savanna landscapes. Furthermore, the proposed framework can potentially be extended to other mapping applications, such as invasive species detection.

Accurate identification of Pinus sylvestris var. mongolica plantations is important for monitoring afforestation quality and ecological restoration in northern Shaanxi. This paper proposes ROSA-TFormer, a radar-optical sensor-aware temporal Transformer for P. sylvestris classification using Sentinel-1/2 time-series data generated on Google Earth Engine. The model integrates separate SAR and optical embedding branches, a sensor-aware gate, and temporal attention pooling to capture multi-source seasonal features. Experiments on monthly and half-month point-level datasets show that ROSA-TFormer achieves strong classification performance, with 99.67% overall accuracy, 99.56% macro F1, and 98.91% P. sylvestris F1 on the HalfMonth-dataBig dataset. Spatial block validation and ablation results further indicate the effectiveness of radar-optical temporal fusion and sensor-aware modeling. The results demonstrate the potential of ROSA-TFormer for point-level P. sylvestris plantation classification, while broader wall-to-wall validation remains necessary.

Illegal logging and timber trade continue to pose significant challenges in the Philippines, where accurate wood species identification is essential for enforcement but limited by the need for specialised equipment and expertise. This study aims to evaluate whether AI models for macroscopic wood identification can be developed and deployed by wood scientists without programming expertise using the Xylorix platform, focusing on five Philippine hardwood species: Mangium (Acacia mangium Willd.), Rain Tree [Samanea saman (Jacq.) Merr.], Banuyo (Wallaceodendron celebicum Koord.), Tindalo [Afzelia rhomboidea (Blanco) Vidal], and Ipil [Intsia bijuga (Colebr.) O. Kuntze]. Binary classifiers were trained on 10,663 verified cross-section images from 260 specimens and evaluated using specimen-level mean scoring to mirror operational field conditions. Area Under the ROC Curve (AUC) values ranged from 0.969 (Ipil) to 1.000 (Mangium), and Average Precision (AP) values ranged from 0.589 (Samanea) to 1.000 (Mangium). Four of five species achieved AA grade (AUC and AP both \geq 0.90); Rain Tree received AE (AUC \geq 0.90, AP < 0.60) due to AP compression from its small positive test set (3 specimens). All five classifiers rank their target specimens above non-target specimens with near-perfect fidelity. Specimen-level error analysis revealed 9 false negatives from Ipil, primarily stemming from localized image artifacts and 3 false positives for Rain Tree and 1 false positive for Tindalo caused by shared tribal-level anatomical traits. These findings demonstrate that Xylorix non-programmers can leverage the Xylorix platform to construct operationally reliable wood identification models suitable for field deployment at supply chain checkpoints.

Accurate quantification of forest coverage and combustible biomass (fuel load) is critical for wildfire risk assessment and ecosystem management. However, traditional methods relying on airborne LiDAR or field surveys are cost-prohibitive and time-intensive, while satellite imagery often lacks the vertical resolution required for canopy volume analysis. This paper proposes a novel, automated pipeline for rapid forest inventory using virtual remote sensing data derived from Google Earth Studio (GES). Our approach first generates low-altitude orbital imagery and camera poses for a target region. For dense 3D reconstruction, we employ Pi-Long, developed within the VGGT-Long framework. This model serves as a scalable extension of the Pi-3 feed-forward Transformer architecture. To address the inherent scale ambiguity in monocular reconstruction, we introduce a metric recovery module that aligns the reconstructed trajectory with GES ground truth poses via Sim(3) Umeyama optimization. The metric-scale point cloud is then orthogonally projected into Bird's-Eye-View (BEV) height and density maps. Finally, we employ a watershed-based segmentation algorithm combined with height variance analysis to classify tree species (conifer vs. broadleaf), calculate Leaf Area Index (LAI), and estimate total fuel load. Experimental results demonstrate that this pipeline offers a scalable, cost-effective alternative to physical scanning, enabling near-real-time estimation of forest biomass with high geometric consistency.

Although tree species classification from Moderate Resolution Imaging Spectroradiometer (MODIS) time series data is critical for supporting various environmental applications, it is a challenging task due to several key difficulties: the subtle signature differences among tree species, strong spatial-spectral-temporal information coupling, and the difficulty of modeling large-scale topological context information. To better address these challenges, this paper presents a novel Graph-regulated Disentangled Sparse Mamba model (GDS-Mamba) for enhanced tree species classification, with the following contributions. (1) First, to improve large-scale context modeling, we design a mini-batch graph-regulated approach that explicitly explores topological correlation effects among input images. (2) Second, to disentangle the high-dimensional spatial-spectral-temporal information coupling for improved feature extraction, we propose a novel disentangling Mamba architecture tailored for capturing independent spatial patterns, spectral signatures, and temporal phenology behaviors in MODIS time series. (3) Third, to improve efficiency and subtle feature learning, we design novel sparse token approaches that adaptively learn the optimum subset of tokens to better address the correlation decay problem that bottlenecks standard Mamba models. Extensive experiments using large-scale annual MOD13Q1 data across two Canadian provinces (i.e., Alberta and Saskatchewan) achieved an overall accuracy of 93.94% in Alberta and 80.19% in cross-provincial evaluations, outperforming twelve state-of-the-art classification models.

The shift from stand-level to individual-tree-level forest assessments supports improved species mapping and biodiversity monitoring, particularly in boreal ecosystems where tree species like aspen (Populus tremula L.) play a keystone role. Airborne laser scanning (ALS) is the standard for such inventories, but a major limitation for developing improved species classification methods is the small number of publicly available ALS datasets containing high-quality, field-validated reference data. Recently, multispectral ALS data has shown promise for tree species classification, but the progress is hindered by the lack of open multispectral ALS datasets with high-quality field reference data. This paper presents and details an open multispectral ALS dataset for tree species classification that was used before its public release for an international benchmarking study of machine learning and deep learning classification methods in a related publication by Taher et al.,(2026). The dataset comprises 6326 segment-level point clouds of individual trees representing nine species in southern Finland. The point cloud data has been acquired using two multispectral laser scanning systems each operating at three laser wavelengths: a helicopter-borne system (HeliALS) with a point density exceeding 1000 points\m2 and an Optech Titan system with approximately 35 points\m2. Furthermore, we present a crowdsourcing application that facilitates the collection of high-quality field reference data of tree species in an efficient and scalable manner. Our article showcases the versatility of the open dataset by presenting new analyses on species classification using multispectral data building upon the initial findings of Taher et al.,(2026).

Accurate classification of tropical tree species from unoccupied aerial vehicle (UAV) imagery remains challenging due to high species diversity and strong visual similarity among species at typical image resolutions (centimeters per pixel). In contrast, models trained on close-up citizen science photographs captured with smartphones achieve strong plant species classification performance. Recent advances in UAV data acquisition now enable the collection of close-up images that are spatially registered with top-view aerial imagery and approach the level of visual detail found in smartphone photographs, with the trade-off that such high-resolution photos cannot be acquired for many trees. In this work, we evaluate the performance of existing methods using paired top-view and close-up UAV imagery collected in a species-rich tropical forest. Through fine-tuning experiments, we quantify the performance gap between vision foundation models and in-domain generalist plant recognition models across both image types (high-resolution close-up versus coarser-resolution top-view imagery). We show that classification performance is consistently higher on close-up images than on top-view aerial imagery, and that this performance gap widens for rare species. Finally, we propose that self-supervised representation alignment across these two spatial scales offers a promising approach for integrating fine-grained visual information into canopy-level species classification models based on top-view UAV imagery. Leveraging high-resolution close-up UAV imagery to enhance canopy-level species classification could substantially improve large-scale monitoring of tropical forest biodiversity.

Hyperspectral tree species classification is challenging due to limited and imbalanced class labels, spectral mixing (overlapping light signatures from multiple species), and ecological heterogeneity (variability among ecological systems). Addressing these challenges requires methods that integrate biological and structural characteristics of vegetation, such as canopy architecture and interspecific interactions, rather than relying solely on spectral signatures. This paper presents a biologically informed, semi-supervised deep learning method that integrates multi-sensor Earth observation data, specifically hyperspectral imaging (HSI) and airborne laser scanning (ALS), with expert, ecological knowledge. The approach relies on biologically inspired pseudo-labelling over a precomputed canopy graph, yielding accurate classification at low training cost. In addition, ecological priors on species cohabitation are automatically derived from reliable sources using large language models (LLMs) and encoded as a cohabitation matrix with likelihoods of species occurring together. These priors are incorporated into the pseudo-labelling strategy, effectively introducing expert knowledge into the model. Experiments on a real-world forest dataset demonstrate 5.6% improvement over the best reference method. Expert evaluation of cohabitation priors reveals high accuracy with differences no larger than 15%.

Accurate estimation of forest biomass, a major carbon sink, relies heavily on tree-level traits such as height and species. Unoccupied Aerial Vehicles (UAVs) capturing high-resolution imagery from a single RGB camera offer a cost-effective and scalable approach for mapping and measuring individual trees. We introduce BIRCH-Trees, the first benchmark for individual tree height and species estimation from tree-centered UAV images, spanning three datasets: temperate forests, tropical forests, and boreal plantations. We also present DINOvTree, a unified approach using a Vision Foundation Model (VFM) backbone with task-specific heads for simultaneous height and species prediction. Through extensive evaluations on BIRCH-Trees, we compare DINOvTree against commonly used vision methods, including VFMs, as well as biological allometric equations. We find that DINOvTree achieves top overall results with accurate height predictions and competitive classification accuracy while using only 54% to 58% of the parameters of the second-best approach.

Detailed structural and species information on individual tree level is increasingly important to support precision forestry, biodiversity conservation, and provide reference data for biomass and carbon mapping. Point clouds from airborne and ground-based laser scanning are currently the most suitable data source to rapidly derive such information at scale. Recent advancements in deep learning improved segmenting and classifying individual trees and identifying semantic tree components. However, deep learning models typically require large amounts of annotated training data which limits further improvement. Producing dense, high-quality annotations for 3D point clouds, especially in complex forests, is labor-intensive and challenging to scale. We explore strategies to reduce dependence on large annotated datasets using self-supervised and transfer learning. Our objective is to improve performance across three tasks: instance segmentation, semantic segmentation, and tree classification using realistic and operational training sets. We observe improvements across all tasks, compared to training from scratch, evaluated with their respective metrics. For instance segmentation, self-supervised learning combined with domain adaptation improves AP50 by 16.98%. For semantic segmentation, self-supervised learning alone improves mIoU by 1.79%. For tree classification, hierarchical transfer learning improves mean Jaccard by 6.07%. To simplify use and encourage uptake, we integrated the tasks into a unified framework, streamlining the process from raw point clouds to tree delineation, structural analysis, and species classification. Pretrained models reduce energy consumption and carbon emissions by ~21%. This open-source contribution aims to accelerate operational extraction of individual tree information from laser scanning point clouds to support forestry, biodiversity, and carbon mapping.

Interest in forestry automation is growing alongside rapid advances in deep learning. In particular, tree detection and taxonomic classification are seen as core tasks required for automating field surveys and forestry equipment. These operations must often be performed in under-canopy settings, which pose challenging conditions for perception systems, including heavy occlusion, variable lighting, and dense vegetation. Despite this necessity, current work has yet to properly establish the feasibility of simultaneously executing tree detection and taxonomic classification in natural forests, as available datasets primarily focus on urban settings or on a limited number of species. To address this gap, we present SilvaScenes, a benchmark dataset for instance segmentation of tree species from under-canopy images in natural forests. Collected across five bioclimatic domains in Quebec, Canada, our dataset features 1421 trees from 28 species, with segmentation masks for pixel-precise tree trunk detection and fine-grained species annotations from forestry experts. We demonstrate the relevance and difficult nature of SilvaScenes by evaluating modern deep learning approaches, showing that while trunk segmentation is feasible, with a top mean average precision (mAP) of 69.9% and mean average recall (mAR) of 76.4%, species-aware segmentation remains a significant challenge with an mAP and an mAR of only 39.2% and 68.6%, respectively. Alongside additional experiments, we highlight key challenges, namely that species imbalance and tree occlusion figure among the most pressing issues for precise segmentation and identification. Meanwhile, higher image resolutions contribute to significant performance gains and will likely prove fundamental to these tasks moving forward. Our dataset, source code, and models will be made available at https://github.com/norlab-ulaval/SilvaScenes.