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Papers

May 19, 2026cs.LG

Active Context Selection Improves Simple Regret in Contextual Bandits

We study the contextual multi-armed bandit problem with a finite context space (a.k.a. subpopulations), where the learner recommends a best action for each context and is evaluated by context-weighted simple regret. Our guarantees are worst-case over the reward distributions, while remaining instance-dependent with respect to the context distribution vector pp. Akin to experimental design problems where the population of interest is fixed but the sampled subpopulation can be controlled, we allow the learner to actively choose which context to sample from. For a known pp, we characterize tight regret rates: passive sampling where contexts are randomly revealed achieves regret of order n/T ∥p∥1/2\sqrt{n/T \, \lVert p \rVert_{1/2}}, whereas active sampling with allocation qj∝pj2/3q_j \propto p_j^{2/3} achieves the tight rate n/T ∥p∥2/3\sqrt{n/T} \, \lVert p \rVert_{2/3}. The resulting improvement can be as large as Θ(k1/4)Θ(k^{1/4}), where kk is the number of contexts. We further extend the analysis to budgeted active sampling, characterize the corresponding tight rate, and identify when a limited active budget suffices to recover the fully active rate. When pp is unknown, we propose the Explore-Explore-Then-Commit (EETC) algorithm, which optimally balances estimating the context distribution and the time to switch to active allocation, such that for large horizons, it matches the known-pp active rate up to constants. Experiments on synthetic and real-world data support our theoretical findings.
Mohammad Shahverdikondori, Jalal Etesami, Negar Kiyavash
May 19, 2026cs.LG

Exploiting Non-Negativity in DAG Structure Learning

This work addresses the problem of learning directed acyclic graphs (DAGs) from nodal observations generated by a linear structural equation model. DAG learning is a central task in signal processing, machine learning, and causal inference, but it remains challenging because acyclicity is a global combinatorial property. Continuous acyclicity constraints have led to important algorithmic advances by replacing the discrete DAG constraint with smooth equality constraints. However, existing formulations still involve difficult non-convex optimization landscapes and may suffer from degenerate first-order optimality conditions. Here, we restrict attention to DAGs with non-negative edge weights and exploit this additional structure to obtain a simpler characterization of acyclicity. Building on this characterization, we formulate a regularized non-negative DAG learning problem and develop an algorithm based on the method of multipliers. We further analyze the benign optimization landscape induced by non-negativity. In the population regime, we show that the true DAG is the unique global minimizer of the proposed augmented-Lagrangian formulation; moreover, the landscape contains no spurious interior stationary points, and the true DAG is the only acyclic KKT point. Numerical experiments on synthetic and real-world data show that the proposed method improves over state-of-the-art continuous DAG-learning alternatives.
Samuel Rey, Madeline navarro, Gonzalo Mateos
May 13, 2026cs.CV

Multilingual OCR-Aware Fine-Tuning and Prompt-Guided Chain-of-Thought Reasoning for Multimodal Large Language Models

Optical character recognition (OCR) and multilingual text understanding remain major failure modes of multimodal large language models (MLLMs), particularly in real-world images containing cluttered layouts, small fonts, blur, occlusion, and complex typography. We present an OCR-aware multilingual multimodal training framework that combines (i) large-scale synthetic OCR-to-translation data generation, (ii) OCR-aware supervised fine-tuning (SFT) with LoRA adaptation, and (iii) structured visual chain-of-thought (CoT) prompting for reasoning under uncertain visual conditions. Using a LLaMA-based multimodal architecture, the proposed framework substantially improves OCR completeness, multilingual translation accuracy, and robustness under degraded visual conditions. Experimental results on multilingual receipts, menus, posters, signs, handwritten text, and document images demonstrate significantly improved visual-text grounding compared with the baseline model. In particular, the proposed OCR-aware post-training framework improves extraction of small, blurred, spatially scattered, and partially occluded text while reducing reliance on language priors under uncertain OCR conditions. Qualitative comparisons with frontier multimodal systems, including GPT-5-class and Gemini-family models, further suggest improved OCR grounding and reduced hallucination under noisy and visually ambiguous OCR scenarios. Overall, the results indicate that data-centric OCR-aware multimodal post-training provides an effective and scalable direction for improving multilingual OCR and OCR-based visual question answering systems.
Qinwu Xu, Yifan Jiang, Haoyu Ren
May 6, 2026cs.LG

Reliable Modeling of Distribution Shifts via Displacement-Reshaped Optimal Transport

Optimal transport (OT) is a central framework for modeling distribution shifts. Because OT compares distributions directly in input space, a well-designed ground metric between observations is essential to ensure that the optimizer does not violate the true geometry of change. We propose Displacement-Reshaped Optimal Transport (ReshapeOT), a method that reshapes the ground metric by integrating observed sample displacements as an additional source of knowledge. Technically, ReshapeOT replaces the Euclidean metric with a Mahalanobis distance estimated from displacement second moments. This effectively carves expressways through the input space, inviting transport solutions that better align with observed displacements. Our method is computationally lightweight, integrates seamlessly into any OT solver that operates on a cost matrix, and can be kernelized for further flexibility. Experiments on synthetic and real-world data show that ReshapeOT achieves substantial gains in transport reliability. We further demonstrate our method's usefulness in two practical use cases.
Philip Naumann, Jacob Kauffmann, Klaus-Robert Müller +1
Apr 30, 2026cs.LG

Diagnosing Capability Gaps in Fine-Tuning Data

Fine-tuning large language models (LLMs) for domain-specific tasks requires training datasets that comprehensively cover the target capabilities a practitioner needs. Yet identifying which capabilities a dataset fails to support, and doing so before an expensive fine-tuning run, remains a largely unsolved problem. We introduce GoalCover, a framework that helps practitioners systematically detect capability gaps in fine-tuning datasets through interactive goal decomposition and automated coverage assessment. GoalCover guides a practitioner through structured decomposition of a high-level goal into atomic, independently evaluable subgoals; assigns each training sample an LLM-based alignment score against every subgoal; and surfaces missing capabilities through automated analysis of low-scoring sample explanations. We validate the framework along two complementary axes. First, through controlled corruption experiments across three domains (medical QA, legal summarization, code generation), we show that GoalCover reliably distinguishes targeted from non-targeted capability impacts: target subgoals degrade by 25.6% on average versus 2.1% for non-target subgoals (Cohen's d=1.24). Second, we demonstrate downstream utility on a financial-summarization Reinforcement Fine-Tuning (RFT) task with Qwen-3-14B: training on GoalCover-filtered data improves the LLM-judge reward from 3.77 to 4.12 (out of 5) over the unfiltered baseline, and combining filtered data with goal-conditioned synthetic samples yields the strongest result (4.20). The two results together show that GoalCover works as a practical pre-fine-tuning diagnostic: it detects capability gaps and produces concrete signal for closing them.
Saeid Asgari Taghanaki, Rakshanda Agarwal, Bruce Sun +10
Apr 27, 2026cs.LG

TTCD:Transformer Integrated Temporal Causal Discovery from Non-Stationary Time Series Data

The widespread availability of complex time series data in various domains such as environmental science, epidemiology, and economics demands robust causal discovery methods that can identify intricate contemporaneous and lagged relationships in non-stationary, nonlinear, and noisy settings. Existing constraint-based methods often rely heavily on conditional independence tests that degrade for limited data samples and complex distributions, while score-based methods impose strong statistical assumptions. Recent methods address special cases such as change point detection or distribution shifts, but struggle to provide a unified solution. We propose the Transformer Integrated Temporal Causal Discovery (TTCD) Framework, a novel end-to-end approach that learns contemporaneous and lagged causal relations from non-stationary time series. TTCD introduces a Non-Stationary Feature Learner integrating temporal and frequency-domain attention with dynamic non-stationarity profiling, and a custom Causal Structure Learner. A key innovation is reconstruction-guided causal signal distillation, to distill essential causal signals through the reconstruction process of the transformer decoder, which mitigates noise and spurious correlations while preserving meaningful dependencies. The Causal Structure Learner operates on distilled reconstructed signals to infer the underlying causal graph without restrictive assumptions on noise distributions or data generation processes. Experiments on synthetic, benchmark, and real world datasets show that TTCD consistently outperforms state-of-the-art baselines in both accuracy and consistency with domain knowledge, demonstrating the approach's effectiveness for causal discovery in challenging real world contexts.
Omar Faruque, Sahara Ali, Xue Zheng +1
Apr 19, 2026cs.CV

ViPS: Video-informed Pose Spaces for Auto-Rigged Meshes

Kinematic rigs provide a structured interface for articulating 3D meshes but lack any associated pose space, i.e., an explicit representation of the plausible manifold of joint configurations for a given mesh. Without such a pose space, stochastic sampling or manual manipulation of raw rig parameters easily results in semantic and/or geometric violations, such as anatomical hyperextension and non-physical self-intersections. We propose Video-informed Pose Spaces (ViPS), a feedforward framework that discovers the latent distribution of valid articulations for auto-rigged meshes by distilling motion priors from a pretrained video diffusion model. Unlike existing methods that rely on scarce, artist-authored 4D datasets, or focus on reconstructing instances of individual motions, ViPS transfers generative video model priors into a universal distribution over the given rig parameterization. Differentiable geometric validators applied to the skinned mesh enforce shape-specific integrity without requiring manual regularizers. Our feedforward model reveals a smooth, compact, and controllable pose space. This, in turn, supports sampling for diverse shape variations, manifold projection for inverse kinematics, and temporally coherent trajectories for animation and keyframing. Further, the distilled 3D pose samples serve as semantic proxies to guide video diffusion, effectively closing the loop between generative 2D priors and structured 3D kinematic control. Our evaluations show that ViPS, trained solely using video priors, matches the performance of state-of-the-art models trained on synthetic artist-created 4D data in both plausibility and diversity. Additionally, as a universal model, ViPS exhibits robust zero-shot generalization to out-of-distribution species and unseen skeletal topologies.
Honglin Chen, Karran Pandey, Rundi Wu +6
Apr 18, 2026cs.LG

Covariance-Based Structural Equation Modeling in Small-Sample Settings with p>np>n

Factor-based Structural Equation Modeling (SEM) relies on likelihood-based estimation assuming a nonsingular sample covariance matrix, which breaks down in small-sample settings with p>np>n. To address this, we propose a novel estimation principle that reformulates the covariance structure into self-covariance and cross-covariance components. The resulting framework defines a likelihood-based feasible set combined with a relative error constraint, enabling stable estimation in small-sample settings where p>np>n for sign and direction. Experiments on synthetic and real-world data show improved stability, particularly in recovering the sign and direction of structural parameters. These results extend covariance-based SEM to small-sample settings and provide practically useful directional information for decision-making.
Hiroki Hasegawa, Aoba Tamura, Yukihiko Okada
Jan 29, 2026cs.LG

TRACE: Trajectory Recovery for Continuous Mechanism Evolution in Causal Representation Learning

Temporal causal representation learning methods assume that causal mechanisms switch instantaneously between discrete domains, yet real-world systems often exhibit continuous mechanism transitions. For example, a vehicle's dynamics evolve gradually through a turning maneuver, and human gait shifts smoothly from walking to running. We formalize this setting by modeling transitional mechanisms as convex combinations of finitely many atomic mechanisms, governed by time-varying mixing coefficients. Our theoretical contributions establish that both the latent causal variables and the continuous mixing trajectory are jointly identifiable. We further propose TRACE, a Mixture-of-Experts framework where each expert learns one atomic mechanism during training, enabling recovery of mechanism trajectories at test time. This formulation generalizes to intermediate mechanism states never observed during training. Experiments on synthetic and real-world data demonstrate that TRACE recovers mixing trajectories with up to 0.99 correlation, substantially outperforming discrete-switching baselines.
Shicheng Fan, Kun Zhang, Lu Cheng
Oct 6, 2025cs.LG

ParallelBench: Understanding the Trade-offs of Parallel Decoding in Diffusion LLMs

While most autoregressive LLMs are constrained to one-by-one decoding, diffusion LLMs (dLLMs) have attracted growing interest for their potential to dramatically accelerate inference through parallel decoding. Despite this promise, the conditional independence assumption in dLLMs causes parallel decoding to ignore token dependencies, inevitably degrading generation quality when these dependencies are strong. However, existing works largely overlook these inherent challenges, and evaluations on standard benchmarks (e.g., math and coding) are not sufficient to capture the quality degradation caused by parallel decoding. To address this gap, we first provide an information-theoretic analysis of parallel decoding. We then conduct case studies on analytically tractable synthetic list operations from both data distribution and decoding strategy perspectives, offering quantitative insights that highlight the fundamental limitations of parallel decoding. Building on these insights, we propose ParallelBench, the first benchmark specifically designed for dLLMs, featuring realistic tasks that are trivial for humans and autoregressive LLMs yet exceptionally challenging for dLLMs under parallel decoding. Using ParallelBench, we systematically analyze both dLLMs and autoregressive LLMs, revealing that: (i) dLLMs under parallel decoding can suffer dramatic quality degradation in real-world scenarios, and (ii) current parallel decoding strategies struggle to adapt their degree of parallelism based on task difficulty, thus failing to achieve meaningful speedup without compromising quality. Our findings underscore the pressing need for innovative decoding methods that can overcome the current speed-quality trade-off. We release our benchmark to help accelerate the development of truly efficient dLLMs.
Wonjun Kang, Kevin Galim, Seunghyuk Oh +8
Aug 22, 2025cs.CV

EM3M: An Electron Micrograph Dataset for Microstructural Segmentation and Generation

Quantitative microstructural characterization is fundamental to materials science, and electron micrographs (EMs) provide indispensable high-resolution insights. However, progress in deep learning-based analysis of EMs has been hampered by the scarcity of large-scale, expert-annotated public datasets. To address this issue, we introduce EM3M, a large-scale and multimodal dataset for instance-level understanding of EMs. EM3M comprises 5,091 high-quality EMs, approximately 3 million instance segmentation annotations, and image-level textual descriptions with disentangled attributes. The dataset is constructed through a rigorous multi-stage curation and validation pipeline, with comprehensive statistical analyses to ensure reliability and reproducibility. Building upon these curated image-text pairs, we further provide a text-to-image diffusion model that serves as a controllable data augmentation engine, demonstrating that synthetic augmentation consistently improves downstream segmentation performance. To establish a systematic benchmark, we evaluate representative instance segmentation methods on EM3M. Our results reveal that conventional detection-based and query-based methods struggle with the extreme instance densities and textural complexities inherent in EMs. We additionally provide an optimized flow-based baseline to facilitate fair comparison and future research. EM3M {Dataset: https://huggingface.co/datasets/UniParser/EM3M}, the generative engine {Generation: https://huggingface.co/UniParser/EM3M-Gen}, and an online demo {Segmentation demo: https://www.bohrium.com/apps/uni-aims} are publicly available to support future research in automated materials analysis.
Nan Wang, Zhiyi Xia, Yiming Li +7
Apr 17, 2025cs.LG

Meta-Dependence in Conditional Independence Testing

Conditional independence testing is a critical component of feature screening, invariant statistical models, and causal discovery. Many of these algorithms rely on the sequential application of conditional independence tests, and their stability hinges on how their outcomes interact. We study this meta-dependence'' between conditional independence properties using the following geometric intuition: satisfying each conditional independence property constrains the space of possible joint distributions to a manifold. The meta-dependence'' of multiple conditional independences in a probability distribution is informed by its position relative to these manifolds. We provide a simple-to-compute measure of this meta-dependence using moment projections, with a closed-form expression for multivariate Gaussian distributions, and consolidate our findings empirically using both synthetic and real-world data. Our measure of meta-dependence does not rely on graphical properties of the distribution and can be computed directly from summary statistics such as a covariance matrix, allowing for various applications. We demonstrate one use case of meta-dependence, using a simple redundancy metric to tune significance thresholds and improve causal discovery.
Bijan Mazaheri, Jiaqi Zhang, Caroline Uhler
Jun 19, 2026cs.LG

A Causal DAG Prior for Synthetic Time-Series Classification Datasets

A Prior-data fitted Network learns the posterior predictive induced by its training prior; bringing this paradigm to multivariate time-series classification therefore calls for a synthetic generator that produces complete labelled datasets with temporal structure. We introduce a causal prior that synthesizes each dataset from a randomly sampled DAG over typed nodes across two modalities (tabular attributes and time series), natively producing multivariate, multi-class TSC datasets with cross-modal causal structure across channels, timesteps and labels, a regime not addressed by existing synthetic priors. To validate the prior, we finetune TabPFN v2.5 with minimal adaptations and evaluate on 75 UCR/UEA datasets within TabPFN's operating regime. Finetuning on our generator significantly outperforms both the unmodified upstream model and a tabular-only ablation of the same prior (Wilcoxon signed-rank p=3.0×10−8p=3.0\times 10^{-8} on ROC-AUC), isolating the contribution of the cross-modal temporal structure.
Franco Martino O'Rourke, Ana Trisovic, Dimitris Bertsimas
May 12, 2026cs.LG

OverNaN: NaN-Aware Oversampling for Imbalanced Learning with Meaningful Missingness

Missing values are routinely treated as defects to be eliminated through deletion or imputation prior to machine learning. In many applied domains, however, missingness itself carries information, reflecting experimental constraints, measurement choices, or systematic mechanisms tied to the data-generating process. Eliminating or masking this structure can distort class boundaries, introduce bias, and reduce generalisability; particularly in imbalanced datasets where minority classes are already under-represented. OverNaN is a lightweight, NaN-aware oversampling framework designed to address class imbalance without erasing missingness structure. It extends common synthetic oversampling methods to operate directly on incomplete feature vectors, allowing missing values to be preserved, propagated, or selectively interpolated according to explicitly defined strategies. Rather than repairing missing data, OverNaN treats missingness as part of the feature space over which synthetic samples are generated. This paper situates OverNaN within the broader landscape of imbalanced learning, missing-data handling, and NaN-tolerant algorithms. Using representative examples included with the software, we demonstrate that meaningful missingness can be retained during oversampling without introducing artificial certainty. OverNaN is intended for practitioners working with small, incomplete, and imbalanced datasets in scientific and engineering domains where missingness is unavoidable and often informative.
Amanda S Barnard
Jul 10, 2026cs.LG

Temporal Knowledge Graph Forecasting under Distribution Shifts: A Synthetic Evaluation

Temporal knowledge graphs (TKGs) represent evolving relational systems, whose underlying data-generating processes often change over time. Yet, TKG forecasting models are commonly evaluated only on empirical benchmark datasets that provide limited insight into the models' robustness to such distribution shifts. Recognising this issue, we study TKG forecasting under controlled shift environments using a synthetic TKG generator that encodes three temporal and structural properties -- recurrence, homophily, and periodicity -- as data-generating mechanisms. This allows us to evaluate seven forecasting architectures under stationary and shifting regimes. Our experiments suggest that robustness in TKG forecasting is highly signal-dependent. Recurrence-based and periodic regularities are largely recoverable under stationary conditions, and simple memory-based baselines can be competitive when recurrence dominates the data. However, structural breaks reveal limitations in model adaptivity, with shifts in latent entity-community structure posing the strongest challenge in our study. Overall, our findings improve the understanding of the capabilities and limitations of current TKG models confronted with temporal distribution shifts.
Konrad Özdemir, Julia Gastinger, Lukas Kirchdorfer +1
Jul 1, 2026cs.LG

How Should Transformers Encode Numeric Values in Electronic Health Records?

How do we encode numeric values in transformer-based sequence processing, particularly in electronic health record (EHR) data? We systematically compare discrete, continuous, and hybrid value encoding strategies using synthetic arithmetic tasks embedded within real-world EHR data, as well as real-world clinical prediction tasks. Our study reveals trade-offs between numeric precision, optimisation stability, and architectural flexibility. We find that approaches that explicitly model value-concept interactions perform best on precision-sensitive arithmetic tasks when architectural constraints permit. Hybrid token-based approaches that retain numeric values but apply binning prior to projection provide a more robust and broadly applicable alternative, with the optimal number of bins following a simple empirically derived power-law in dataset size. Across tasks, models consistently exhibit reliable "good enough" numeric computation rather than exact arithmetic, while clinical gains from incorporating laboratory values are task-dependent. This suggests that robustness and deployability often outweigh maximal numeric precision in practice, motivating hybrid token-based approaches as a practical default.
Maria Elkjær Montgomery, Christian Igel, Mikkel Odgaard +2
Jun 19, 2026eess.IV

2D Versus 3D Diffusion for In Silico Training of Interventional X-ray AI Models

The ability to synthesize realistic X-ray images has catalyzed the development of AI models for X-ray image-guided procedures, which otherwise suffer from a lack of available annotated data. Prior work has demonstrated the effectiveness of mechanistic simulation of digitally reconstructed radiographs (DRRs) as a training data source for a myriad of tasks, including segmentation and anatomical landmark detection, with comparable or superior performance to real data training. However, mechanistic DRR synthesis still relies on the availability of annotated high-resolution anatomical models. Deriving these from CT images of real patients or specimens imposes an undesirable bottleneck on data quantity and variability. In this work, we explore two methods for synthesizing training data: (1) a 3D conditional latent diffusion model that generates CT volumes to use as inputs for mechanistic DRR generation without real, 3D anatomical models, and (2) a view-conditioned 2D diffusion model that produces synthetic X-rays. In controlled experiments, we demonstrate that synthetic 2D diffusion-based X-rays can be used to train an anatomical landmark detection model that generalized to real X-ray images with performance rivaling that of a model trained on real X-ray images. Thus, we provide preliminary evidence that synthetic, 2D diffusion-based training data can substitute for real X-ray data, identifying a promising avenue towards generating large, diverse datasets for training robust AI models in interventional X-ray imaging.
Sampath Rapuri, Jeremy Ko, Benjamin D. Killeen +2
Jun 2, 2025quant-ph

Learning thermodynamic master equations for open quantum systems

The characterization of Hamiltonians and other components of open quantum dynamical systems plays a crucial role in quantum computing and other applications. Scientific machine learning techniques have been applied to this problem in a variety of ways, including by modeling with deep neural networks. However, the majority of mathematical models describing open quantum systems are linear, and the natural nonlinearities in learnable models have not been incorporated using physical principles. We present a data-driven model for open quantum systems that includes learnable, thermodynamically consistent terms. The trained model is interpretable, as it directly estimates the system Hamiltonian and linear components of coupling to the environment. We validate the model on synthetic two and three-level data, as well as experimental two-level data collected from a quantum device at Lawrence Livermore National Laboratory.
Peter Sentz, Stanley Nicholson, Yujin Cho +3
May 7, 2026cs.CV

Advancing Reliable Synthetic Video Detection: Insights from the SAFE Challenge

The proliferation of generative video technologies has intensified the need for reliable methods to detect and characterize synthetic media. To address this challenge, we organized the \href{https://safe-video-2025.dsri.org}{SAFE: Synthetic Video Detection Challenge}, co-located with the \textit{Authenticity and Provenance in the Age of Generative AI (APAI) Workshop }at ICCV 2025. The competition invited participants to develop and evaluate algorithms capable of distinguishing real from synthetic videos under fully blind evaluation conditions with over 600 submissions from 12 teams over a 90 day span. Hosted on the Hugging Face platform, the challenge comprised two primary tasks: (1) detection of synthetic video content generated by diverse state-of-the-art models, and (2) detection of synthetic content following common post-processing operations such as resizing, re-compression, motion blur and others. The challenge data consisted of 13 modern high quality synthetic video models with generated content matched to real videos from 21 diverse and challenge sources, all adding up to 20 hours of 6,000 video samples. This paper describes the challenge design, dataset construction, evaluation methodology, and outcomes, offering insights into the generalization and robustness of contemporary synthetic video detection methods. Our findings highlight measurable progress in cross-generator generalization but also persistent vulnerabilities to post-processing artifacts. https://safe-video-2025.dsri.org
Kirill Trapeznikov, Gabriel Mancino-Ball, Jonathan Li +9
Jun 5, 2026cs.LG

Accelerating Reproducible Research in Synthetic EHR Generation

The generation of high-fidelity synthetic Electronic Health Records (EHR) is crucial for advancing medical research while preserving patient privacy. However, head-to-head comparison of existing generative models is hindered by disjointed codebases, incompatible data loaders, conflicting library dependencies, and inconsistent evaluation protocols. To address these gaps, we introduce a lightweight, end-to-end benchmarking framework for reproducible synthetic EHR evaluation, organized as a unified pipeline spanning data ingestion, standardized model training, and architecture-agnostic evaluation. Our current implementation targets the generation of longitudinal ICD diagnosis codes -- the most commonly studied modality in this literature -- and is built on the community-maintained PyHealth library. We reimplement and unify strong baselines (MedGAN, CorGAN, PromptEHR, HALO) under full ICD-9 vocabulary granularity, and add a lightweight GPT-2 baseline from the general-purpose sequence-modeling literature. We contribute a rigorous, architecture-agnostic privacy-utility evaluation suite that applies identically to GAN- and transformer-based generators, and report bootstrapped confidence intervals across all metrics. We further analyze the poor long-tailed performance of existing models and discuss the extensibility of our framework beyond diagnosis codes. By lowering the engineering barrier to running, extending, and evaluating under a single pipeline, we introduce a starting point for community-driven reproducibility and benchmarking synthetic EHR models.
Jalen Jiang, Chufan Gao, Ethan Rasmussen +2
Jul 14, 2026cs.CV

Controllable Generation of Diverse Dermatological Imagery for Fair and Efficient Malignancy Classification

Accurate dermatological diagnosis naturally necessitates equitable performance across diverse populations, yet a systematic lack of expertly annotated images, especially for underrepresented skin tones and rare diseases, impedes progress toward measurably fair methods. We introduce cgDDI (Controllable Generation of Diverse Dermatological Imagery), a hybrid framework that (1) synthesizes realistic healthy skin samples without disturbing other input properties, (2) maps single-sample rare lesions onto novel skin-tones and locations non-parametrically, and (3) allows for efficient parametric generation with as few as 10 training samples. The framework supports both human and automated segmentation masking, enabling scalability to datasets without pre-made lesion masks. We grow a 656-image dataset by more than 400x and validate across two datasets: biopsy-confirmed Diverse Dermatology Images (DDI) and expert-verified Fitzpatrick17k (F17k). On the DDI benchmark, we achieve malignancy classification accuracy of 86.4% under synthetic-only training and 90.9% state-of-the-art performance with real data fine-tuning, alongside leading fairness metrics. Cross-dataset experiments show +13.9% accuracy improvements on unseen F17k data despite minimal disease overlap. We openly release 266k+ synthetic images, code, and generative models to further support fairness research at https://github.com/hectorcarrion/ControllableGenDDI.
Héctor Carrión, Narges Norouzi
Jul 2, 2026cs.CV

Plug-and-Play Volumetric Reconstruction for Compressive Sensing Light-Sheet Microscopy

We investigate volumetric reconstruction for compressive sensing light-sheet microscopy (CS-LSM), where fast volumetric imaging is achieved by encoding multiple axial planes into each camera exposure. To recover the underlying volume from highly multiplexed measurements, we propose a plug-and-play (PnP) framework that flexibly incorporates any user-specified denoiser into the reconstruction process. Building on a slice-based formulation, we further introduce an axial-coupled model that exploits correlations between adjacent slices to improve volumetric continuity. For efficient computation, we derive a Woodbury-based update for the data-consistency step in both the slice-based and axial-coupled formulations, and employ a Gauss-Seidel sweep for the denoising step in the axial-coupled model. Under a weakly convex regularization assumption, we establish subsequential convergence of the proposed algorithm. Experiments on synthetic and real zebrafish-heart data demonstrate that the proposed framework successfully recovers cellular structures from compressed measurements, and provide practical insights into the comparative performance of commonly used denoisers within the PnP framework under the CS-LSM setup.
Jianqing Jia, Yi Gong, Xinyuan Zhang +3
Jun 22, 2026cs.CV

BoxCtrl: 3D-Aware Visual Prompting for Geometric Image Editing

As instruction-based editing models and multimodal large language models advance, diverse image editing tasks have become feasible. However, achieving precise and consistent geometric image editing, such as translating, scaling, and rotating in 3D space, remains a major challenge. In this work, we introduce BoxCtrl, a 3D-aware visual prompting framework. Unlike text-only or coarse 2D-guided approaches, our method introduces informative RGB 3D bounding boxes projected onto 2D images as visual prompts. The three orthogonal faces of each box are painted with distinct RGB colors, simultaneously encoding position, size, and orientation to provide a compact, intuitive in-context visual example. The key to BoxCtrl's success lies in these well-designed bounding boxes, which decouple geometric control from appearance control. This enables the model to learn consistent correspondences between faces of the same color in the latent space, leading to a precise understanding of geometric intentions and accurate editing results. We introduce a two-stage training paradigm: Supervised Fine-Tuning (SFT) followed by Reinforcement Learning (RL). To address paired data scarcity, we construct a large-scale synthetic dataset for SFT, equipping the model with fundamental editing capabilities. To bridge the synthetic-to-real domain gap, we incorporate an online RL stage leveraging unpaired real-world data. Guided by a reward function evaluating geometric accuracy and visual fidelity, our SFT-RL strategy significantly enhances geometric precision while maintaining photorealistic quality. Extensive experiments demonstrate that BoxCtrl achieves state-of-the-art performance across translation, rotation, scaling, and composite editing tasks.
Feifei Wang, Shiyuan Yang, Xiaoyu Li +1
Sep 16, 2026cs.LG

Every Fixed Metric Has a Blind Spot: A Learned Atmospheric Critic for Scoring Forecast Realism

Despite their high accuracy on point-wise metrics, machine learning weather forecasting models can exhibit different failure modes such as blurring, periodic irregularities, and other unphysical spatial artifacts. This has motivated a variety of metrics to detect known failure cases. Existing metrics fix a representation or transformation in advance, and that choice limits the artifacts they can detect. We propose to train a discriminator for separating reference data from the model's output, and using its output logit to obtain a divergence-like realism score. The discriminator learns whatever separates the model's fields from real weather, adapting to whichever failure mode that model exhibits. We compare our learned atmospheric critic to existing metrics using various synthetic corruptions applied to ERA5 reanalysis data. Our method successfully identifies the corruptions and ranks their severity, while existing metrics fail on at least one corruption. Additionally, we evaluate forecasts from real weather models, and find that the realism score degrades with longer lead times and the metric generally assigns higher realism to numerical models than to machine learning models.
Younes Elberkennou, Dmitri Demler, Thierry Meier +3
May 15, 2026cs.LG

SurvivalPFN: Amortizing Survival Prediction via In-Context Bayesian Inference

Survival analysis provides a powerful statistical framework for modeling time-to-event outcomes in the presence of censoring. However, selecting an appropriate estimator from the many specialized survival approaches often requires substantial methodological and domain expertise. We introduce SurvivalPFN, a prior-data fitted network that amortizes Bayesian inference for censored observations through in-context learning. SurvivalPFN is pretrained on a diverse family of synthetic, identifiable, and right-censored data-generating processes, enabling it to amortize survival analysis in a single forward pass during inference. As a result, the model adapts to the effective complexity of each dataset without task-specific training or hyperparameter tuning, avoids restrictive parametric assumptions, and produces calibrated survival distributions. In a large-scale benchmark spanning 61 datasets, 21 methods, and 5 evaluation metrics, SurvivalPFN achieves strong predictive performance and often improves upon established survival models. These results suggest that SurvivalPFN offers a principled and practical foundation model for survival analysis, with potential applications in high-impact domains such as healthcare, finance, and engineering (https://github.com/rgklab/SurvivalPFN).
Shi-ang Qi, Vahid Balazadeh, Michael Cooper +2
Jul 15, 2026cs.LG

Learning Who to Treat When Treatment is Missing

Policy learning methods are increasingly used to inform treatment allocation under budget constraints. Most proposed methods assume complete treatment data, yet applications frequently suffer from missingness that can bias estimates and lead to suboptimal policies. We address this gap by extending efficient estimators for average treatment effect (ATE) estimation to policy value and conditional average treatment effect (CATE) estimation under missing at random (MAR) and missing completely conditionally at random (MCCAR) treatment data. Through asymptotic efficiency analysis, we prove that the MAR estimator, which leverages partially-observed units, is both valid and more efficient than the MCCAR estimator when MCCAR assumptions hold. This result provides formal justification for preferring MAR-based estimation in policy learning under both missing data settings. Our comprehensive experiments using synthetic and semi-synthetic datasets confirm that correctly specifying the missingness mechanism is crucial: misspecified estimators remain biased regardless of sample size, while our estimators achieve near-oracle performance when assumptions are satisfied. Our work provides practitioners with theoretically grounded, empirically validated tools for robust policy learning in the presence of missing treatment data.
Johnna Sundberg, Rayid Ghani, Eli Ben-Michael +1
May 17, 2026cond-mat.soft

Topological Data Analysis combined with Machine Learning for Predicting Permeability of Porous Media

Flow in porous media is difficult to address using standard analytical or numerical methods due to its complexity. However, since synthetic representations of porous media are easy to produce and data from physical experiments are becoming more widely available, the problem is well-suited to studies that include machine learning (ML) techniques. We discuss a number of features that can be extracted from such data, and their utility as input variables into a standard ML algorithm. These features include structural measures describing the geometry of the porous media, topological measures describing the connectivity, and network measures obtained by modeling the porous media as simplified pore networks. These features enable the prediction of the permeability of the considered (synthetic) porous materials using ML techniques that also leverage the separately computed exact permeability (ground truth). Comparing results obtained using different input variables helps develop a better understanding of the utility of various measures for predicting permeability based on the porous media structure. We show, in particular, that topological data analysis (TDA) provides a useful set of features that can be easily combined with ML to yield meaningful results.
Ebru Dagdelen, Catherin Neena Lalu, Aakash Karlekar +5
Jul 16, 2026cs.AI

Demographically-Conditioned Synthetic Medical Images for Bias Mitigation and Bias Detection in Disease Classifiers

Per-subgroup fairness audits of medical image classifiers face a sample-size problem: minority subgroups in held-out test sets have so few samples that the resulting confidence intervals on per-subgroup performance are wider than the bias the audit is meant to detect. We argue that a demographically-conditioned synthetic generator can do both: mitigate bias on the training side and detect bias on the evaluation side. Working on COVID-19 chest CT classification with an end-to-end fine-tuned Stable Diffusion 2.1 generator, we make two findings. For bias mitigation (training), a demographically-balanced synthetic cohort is most useful as a pretraining prior, not as joint augmentation: with the same fixed data, sequential pretraining followed by fine-tuning substantially outperforms joint augmentation, and the resulting classifier surpasses the full-real baseline at \sim$$100\times real-data efficiency. For bias detection (evaluation), across five synthetic minority cohorts and five classifier seeds, the synthetic estimator reproduces the subgroup ranking of a well-powered real oracle (Spearman ρ=1.00ρ= 1.00 on MCC and Recall) and gives the more reliable per-cell estimate where the small real test set runs out of samples. The synthetic cohort is therefore most useful in exactly the cells that fairness audits care about, as both a fix for and a measure of subgroup bias.
Mahmoud Ibrahim, Bart Elen, Chang Sun +2
Sep 23, 2026cs.CL

Consequential Behaviour and Representational Fairness in the Validation of Synthetic Research

Researchers in industry and academia use synthetic survey respondents powered by large language models as substitutes for human samples. These synthetic populations require validation against real-world data, so researchers often address them using ad hoc comparisons with human surveys. Inspired by the intention-behaviour gap in behavioural science, we argue that these validations test the wrong thing for most applied cases where decision makers commission synthetic research to anticipate consequential behaviour. To address this problem, we propose a validation framework with two requirements. First, every validity claim must state its level of correspondence with human data: does the sample predict what the represented people do, which of four diagnostics (location, dispersion, response process and structure) does the validation address, and does the validation compare against experimental effects? Second, researchers must report validity claims for subgroups, since these groups are often the most affected by consequential decisions and aggregate accuracy hides their misrepresentation. Our validation framework operationalises three justice dimensions (distributional, procedural, and recognition) as measurable quantities and defines within-persona counterfactual experiments as a validation requirement. We then apply the framework to electric vehicle charging tariffs, before closing with a reporting checklist that researchers can use to make convincing validity claims.
Florian Kutzner, Celina Kacperski, Laura de Molière +4
Jun 29, 2026cs.AI

The CRISTAL Method: Neurosymbolic analysis from AI-synthesized world models

This project introduces the CRISTAL Method (Coherent Reliable Intentional Synthesis of Truthful Analysis Logic), a neurosymbolic framework for automating complex analysis workflows, with fundamental investment analysis as a primary use case. This domain poses major challenges: high structural uncertainty, noisy and subjective data, tight attention budgets, and the need for justified, reproducible decisions. Human analysts often struggle in this domain due to cognitive biases and limitations, suggesting significant value in automation. But while LLM-based agents have been proposed as analytical aids, their limitations -- poor numerical reasoning, unawareness of uncertainty, and lack of reproducibility -- hinder their effectiveness in this context. CRISTAL addresses these gaps through a principled blend of statistical model synthesis, continuous learning, and active learning. Starting from a natural-language prior knowledge curriculum, CRISTAL builds a dynamic, interpretable probabilistic program that enables full Bayesian inference, including uncertainty quantification and budget-aware data acquisition. CRISTAL continually refines its world model during analysis, leveraging LLMs for code synthesis and learning. We validate CRISTAL on a novel benchmark of synthetic equities with rich financial and textual data. On a company classification task, CRISTAL achieves Bayes-optimal accuracy with just 5 examples and a 5-second budget, outperforming state-of-the-art LLMs that plateau around 40% accuracy even with order-of-magnitude more input data and compute.
Rafael Kaufmann, Felix Neubürger, Michael Walters +2