Agricultural Image Analysis

High-throughput plant phenotyping, the quantitative measurement of observable plant traits, is critical for modern breeding but remains constrained by a "phenotyping bottleneck," where manual data collection is labor-intensive and prone to observer bias. Conventional closed-set computer vision systems fail to address this challenge, as they require extensive species-specific annotation and lack the flexibility to handle diverse breeding populations. To bridge this gap, we present CropVLM, a Vision-Language Model (VLM) adapted for the agricultural domain via Domain-Specific Semantic Alignment (DSSA). Trained on 52,987 manually selected image-caption pairs covering 37 species in natural field conditions, CropVLM effectively maps agronomic terminology to fine-grained visual features. We further introduce the Hybrid Open-Set Localization Network (HOS-Net), an architecture that integrates CropVLM to enable the detection of novel crops solely from natural language descriptions without retraining. By eliminating the reliance on species-specific training data, CropVLM provides a scalable solution for high-throughput phenotyping, accelerating genetic gain and facilitating large-scale biodiversity research essential for sustainable agriculture. The trained model weights and complete pipeline implementation are publicly available at: https://github.com/boudiafA/CropVLM. In comprehensive evaluations, CropVLM achieves 72.51% zero-shot classification accuracy, outperforming seven CLIP-style baselines. Our detection pipeline demonstrates superior zero-shot generalization to novel species, achieving 49.17 AP50 on our CVTCropDet benchmark and 50.73 AP50 on tropical fruit species, compared to 34.89 and 48.58 for the next-best method, respectively.

Foundation-model pipelines for individual-level livestock monitoring -- combining open-vocabulary detection, promptable video segmentation, and self-supervised visual embeddings -- have raised the accuracy ceiling of precision livestock farming (PLF), but their GPU memory budgets exceed the envelope of commodity edge accelerators. To close this gap, the 446M-parameter Perception Encoder (PE-ViT-L+) backbone of SAM 3 is distilled into a 40.66M-parameter multi-scale student through three mechanisms: a Feature Pyramid Network student encoder built on TinyViT-21M-512, a four-term direction-then-scale distillation loss, and backbone-substitution inference with sliding-window session pruning that bounds streaming GPU memory growth. The DINOv3 family includes a pre-distilled ViT-S/16 variant (21.6M parameters) released alongside a 6716M-parameter ViT-7B teacher; the ViT-S (21M) variant is adopted as the per-individual embedder. On the Edinburgh Pig dataset, the compressed pipeline reaches 92.29% MOTA and 96.15% IDF1 against the SAM 3 teacher (1.68- and 0.84-percentage-point losses), achieves a 7.77-fold reduction in system-level parameters and a 3.01-fold reduction in peak VRAM (19.52GB -> 6.49GB), and reaches 97.34% top-1 accuracy with 91.67% macro-F1 on nine-class pig behaviour classification. The pipeline fits inside an NVIDIA Jetson Orin NX 16GB envelope with 4.9GB of headroom, supporting a proposed -- but not yet empirically validated -- on-device embedding-pool re-identification mechanism whose per-individual footprint of approximately 94MB per animal per year produces a longitudinal visual record amenable to retrospective association with disease, lameness, reproductive, and growth outcome labels.

This paper presents a comparative evaluation of convolutional and transformer-based object detection architectures for early weed detection in tomato plantations. Representative models from each paradigm are considered, including YOLOv26-nano, a recent variant of the YOLO family, and RT-DETR Large and RF-DETR Medium as transformer-based architectures. The evaluation was conducted on the GROUNDBASED_WEED dataset, considering six weed classes and an additional category corresponding to unidentified plants, which allowed for the assessment of performance in terms of detection accuracy and computational efficiency using metrics such as precision, recall, average precision, and inference speed, as well as non-parametric statistical tests. The results highlight a clear trade-off between efficiency and contextual modeling: CNN-based detectors achieve high performance at a lower computational cost, while transformer-based approaches offer better global context capture at the expense of higher resource demands. These results provide practical criteria for model selection in precision agriculture applications.

Accurate fruit maturity identification is essential for determining harvest timing, as incorrect assessment directly affects yield and post-harvest quality. Although ripening is a continuous biological process, vision-based maturity estimation is typically formulated as a multi-class classification task, which imposes sharp boundaries between visually similar stages. To examine this limitation, we perform an annotation reliability study with two independent annotators on a held-out tomato dataset and observe disagreement concentrated near adjacent maturity stages. Motivated by this observation, we model maturity as a latent continuous variable and predict it probabilistically using a distributional detection head, converting the distribution into class probabilities through the cumulative distribution function (CDF). The proposed formulation maintains comparable performance to a standard detector under clean labels while better representing uncertainty. Furthermore, when controlled label noise is introduced during training, the probabilistic model demonstrates improved robustness relative to the baseline, indicating that explicitly modeling maturity uncertainty leads to more reliable visual maturity estimation.

Crop disease diagnosis from field photographs faces two recurring problems: models that score well on benchmarks frequently hallucinate species names, and when predictions are correct, the reasoning behind them is typically inaccessible to the practitioner. This paper describes Agri-CPJ (Caption-Prompt-Judge), a training-free few-shot framework in which a large vision-language model first generates a structured morphological caption, iteratively refined through multi-dimensional quality gating, before any diagnostic question is answered. Two candidate responses are then generated from complementary viewpoints, and an LLM judge selects the stronger one based on domain-specific criteria. Caption refinement is the component with the largest individual impact: ablations confirm that skipping it consistently degrades downstream accuracy across both models tested. On CDDMBench, pairing GPT-5-Nano with GPT-5-mini-generated captions yields +22.7 pp in disease classification and +19.5 points in QA score over no-caption baselines. Evaluated without modification on AgMMU-MCQs, GPT-5-Nano reached 77.84% and Qwen-VL-Chat reached 64.54%, placing them at or above most open-source models of comparable scale despite the format shift from open-ended to multiple-choice. The structured caption and judge rationale together constitute a readable audit trail: a practitioner who disagrees with a diagnosis can identify the specific caption observation that was incorrect. Code and data are publicly available https://github.com/CPJ-Agricultural/CPJ-Agricultural-Diagnosis

Effective pest recognition and management are crucial for sustainable agricultural development. However, collecting pest data in real scenarios is often challenging. Compared to other domains, pests exhibit a wide variety of species with complex and diverse morphological characteristics. Existing techniques struggle to effectively model the key visual and high-level semantic features of pests in a fine-grained manner. These limitations hinder the practical application of such methods in real agricultural scenarios. To address these critical challenges, we present a synergistic approach that integrates PestVL-Net, a novel vision-language framework, with two multi-species pest datasets to facilitate fine-grained pest learning. The visual pathway of PestVL-Net utilizes the Recurrent Weighted Key Value (RWKV) architecture, incorporating a saliency-guided adaptive window partitioning scheme to effectively model the fine-grained visual characteristics of pests. Concurrently, the linguistic component generates precise pest semantic descriptions by leveraging Multimodal Large Language Models (MLLMs) priors, critically informed by agricultural expert knowledge and structured via multimodal Chain-of-Thought (CoT) reasoning. The deep fusion of these complementary visual and textual representations enables fine-grained multimodal pest learning. Extensive experimental evaluations on multiple pest datasets validate the superior performance of PestVL-Net, highlighting its potential for effective real-world pest management.

Stomata play a crucial role in regulating plant physiological processes and reflecting environmental responses. However, accurate and high-throughput stomatal phenotyping remains challenging, as conventional approaches rely on destructive sampling and manual annotation, restricting large-scale and field deployment. To overcome these limitations, a noninvasive restoration-detection integrated framework, termed StomaD2, is developed to achieve accurate and fast stomatal phenotyping under complex imaging conditions. The framework incorporates a diffusion-based restoration module to recover degraded images and a specialized rotated object detection network tailored to the small, dense, and cluttered characteristics of stomata. The proposed network enhances feature representation through three key innovations: a column-wise structure for global feature interaction, context-aware resampling and reweighting mechanism to improve multi-scale consistency, and a feature reassembly module to boost discrimination against complex backgrounds. In extensive comparisons, StomaD2 demonstrated state-of-the-art performance. On public Maize and Wheat datasets, it achieved accuracies of 0.994 and 0.992, respectively, significantly outperforming existing benchmarks. When benchmarked against ten other advanced models, including Oriented Former and YOLOv12, StomaD2 achieved a top-tier F1-score/mAP of 0.989. The framework is integrated into a user-friendly, field-operable system that supports the fast extraction of eight stomatal phenotypes, such as density and conductance. Validated on more than 130 plant species, StomaD2's results highlight its strong generalizability and potential for large-scale phenotyping, plant physiology analysis, and precision agriculture applications.

This paper presents SWNet, a bimodal end-to-end cross-spectral network specifically engineered for the detection of camouflaged weeds in dense agricultural environments. Plant camouflage, characterized by homochromatic blending where invasive species mimic the phenotypic traits of primary crops, poses a significant challenge for traditional computer vision systems. To overcome these limitations, SWNet utilizes a Pyramid Vision Transformer v2 backbone to capture long-range dependencies and a Bimodal Gated Fusion Module to dynamically integrate Visible and Near-Infrared information. By leveraging the physiological differences in chlorophyll reflectance captured in the NIR spectrum, the proposed architecture effectively discriminates targets that are otherwise indistinguishable in the visible range. Furthermore, an Edge-Aware Refinement module is employed to produce sharper object boundaries and reduce structural ambiguity. Experimental results on the Weeds-Banana dataset indicate that SWNet outperforms ten state-of-the-art methods. The study demonstrates that the integration of cross-spectral data and boundary-guided refinement is essential for high segmentation accuracy in complex crop canopies. The code is available on GitHub: https://cod-espol.github.io/SWNet/

Accurate apple detection in orchard images is important for yield prediction, fruit counting, robotic harvesting, and crop monitoring. However, changing illumination, leaf clutter, dense fruit clusters, and partial occlusion make detection difficult. To provide a fair and reproducible comparison, this study establishes a controlled benchmark for single-class apple detection on the public AppleBBCH81 dataset using one deterministic train, validation, and test split and a unified evaluation protocol across six representative detectors: YOLOv10n, YOLO11n, RT-DETR-L, Faster R-CNN (ResNet50-FPN), FCOS (ResNet50-FPN), and SSDLite320 (MobileNetV3-Large). Performance is evaluated primarily using COCO-style [email protected] and [email protected]:0.95, and threshold-dependent behavior is further analyzed using precision-recall curves and fixed-threshold precision, recall, and F1-score at IoU = 0.5. On the validation split, YOLO11n achieves the best strict localization performance with [email protected]:0.95 = 0.6065 and [email protected] = 0.9620, followed closely by RT-DETR-L and YOLOv10n. At a fixed operating point with confidence >= 0.05, YOLOv10n attains the highest F1-score, whereas RT-DETR-L achieves very high recall but low precision because of many false positives at low confidence. These findings show that detector selection for orchard deployment should be guided not only by localization-aware accuracy but also by threshold robustness and the requirements of the downstream task.

The need for effective cattle identification technology is now more acutely felt than ever in maintaining biosecurity, food safety, and supply chain efficacy in livestock management. This paper presents a systematic review of recent research in cattle identification using machine learning and deep learning techniques. The present systematic review measures the effectiveness of traditional and modern cattle identification techniques using studies from major academic databases, where articles were subjected to full-text review. Among these techniques, classical Machine Learning Techniques such as K-Nearest Neighbors and Support Vector Machines have demonstrated good results in cattle identification; however, Deep Learning Techniques, such as Convolutional Neural Networks, Residual Networks, and You Only Look Once, are better in cognition, detection, and identification tasks. Feature extraction relies on common techniques like Local Binary Pattern (LBP), Speeded-Up Robust Features (SURF), and Scale-Invariant Feature Transform (SIFT), while key features commonly used in these studies include muzzle prints and coat patterns. The review highlights key hurdles involving cattle identification, such as the limited number of publicly accessible datasets, issues with data quality susceptible to environmental changes and animal mobility, and high demand for real-time processing ability. The paper aims to inform researchers, policymakers, and stakeholders about implementing scalable, humane, and effective cattle identification systems to achieve sustainable livestock management.

Post-harvest fruit quality assessment is essential for reducing food waste, yet reliable non-destructive methods typically depend on expensive hyperspectral cameras and computationally intensive deep learning models. These systems typically require GPU resources, large-scale training data, and domain expertise, limiting their feasibility for many real-world agricultural settings. This study systematically evaluates 20 classical machine learning algorithms on hyperspectral imaging data for simultaneous ripeness classification and firmness prediction across five fruit species, using cross-validated experimental design with Bayesian hyperparameter optimization. Data preprocessing strategy, particularly class balancing and spectral transformations, contributes as much to prediction accuracy as algorithm choice. Our results show that tree-based machine learning models can outperform state-of-the-art deep earning models reported in Fruit-HSNet. Moreover, the findings indicate that only three visible-range wavelengths are needed to recover over 94% of full-spectrum accuracy, demonstrating that low-cost multispectral sensors combined with lightweight machine learning models can serve as practical alternatives to expensive hyperspectral cameras and complex deep learning approaches for practical fruit quality sorting.

Early detection of highly pathogenic avian influenza (HPAI) and endemic poultry diseases is critical for global food security. While computer vision models excel at classifying diseases from fecal imaging, deploying these systems at scale is bottlenecked by farm data privacy concerns and institutional data silos. Furthermore, existing open-source agricultural datasets frequently suffer from severe, undocumented data contamination. In this paper, we introduce $\textbf{FecalFed}$, a privacy-preserving federated learning framework for poultry disease classification. We first curate and release $\texttt{poultry-fecal-fl}$, a rigorously deduplicated dataset of 8,770 unique images across four disease classes, revealing and eliminating a 46.89$\%$ duplication rate in popular public repositories. To simulate realistic agricultural environments, we evaluate FecalFed under highly heterogeneous, non-IID conditions (Dirichlet $α=0.5$). While isolated single-farm training collapses under this data heterogeneity, yielding only 64.86$\%$ accuracy, our federated approach recovers performance without centralizing sensitive data. Specifically, utilizing server-side adaptive optimization (FedAdam) with a Swin-Small architecture achieves 90.31$\%$ accuracy, closely approaching the centralized upper bound of 95.10%. Furthermore, we demonstrate that an edge-optimized Swin-Tiny model maintains highly competitive performance at 89.74$\%$, establishing a highly efficient, privacy-first blueprint for on-farm avian disease monitoring.

Standing water in agricultural fields threatens vehicle mobility and crop health. This paper presents a deployed edge architecture for standing-water detection using Raspberry-Pi-class devices with optional Jetson acceleration. Camera input and environmental sensors (humidity, pressure, temperature) are combined in a finite-state machine (FSM) that acts as the architectural decision engine. The FSM-guided control plane selects between local and offloaded inference tiers, trading accuracy, latency, and energy under intermittent connectivity and motion-dependent compute budgets. A multi-model YOLO ensemble provides image scores, while diurnal-baseline sensor fusion adjusts caution using environmental anomalies. All decisions are logged per frame, enabling bit-identical hardware-in-the-loop replays. Across ten configurations and sensor variants on identical field sequences with frame-level ground truth, we show that the combination of adaptive tiering, multi-model consensus, and diurnal sensor fusion improves flood-detection performance over static local baselines, uses less energy than a naive always-heavy offload policy, and maintains bounded tail latency in a real agricultural setting.

Image-based plant phenotyping depends on dense structural understanding of crops, yet pixel-level annotation remains expensive across species, organs, growth stages, and field conditions. General-purpose vision foundation models offer a natural route to label efficiency, but their web-scale pretraining objectives transfer weakly to agricultural imagery, where semantics are often determined by fine organ geometry inside repetitive, texture-dominated scenes. We introduce SPROUT, a diffusion foundation model for multi-crop plant phenotyping. SPROUT learns from 2.6 million unlabeled open-field images (MCD-2.6M) using a pixel-space Diffusion Transformer, and selects transferable features with a label-free effective-rank criterion over denoising timesteps. This design shifts pretraining from crop-based invariance to structure-preserving denoising, making the representation better aligned with dense phenotyping tasks. We evaluate SPROUT across dense phenotyping tasks, including organ segmentation, crop-weed parsing, depth estimation, and counting. SPROUT consistently improves over strong web-pretrained baselines, with the largest gains on dense structural prediction, and shows favorable label and compute efficiency compared with general-purpose and crop-specific foundation models. The source code and MCD-2.6M dataset are publicly available.

Quantifying exhaled CO2 from free-roaming cattle is both a direct indicator of rumen metabolic state and a prerequisite for farm-scale carbon accounting, yet no existing system can deliver continuous, spatially resolved measurements without physical confinement or contact. We present TRACE (Thermal Recognition Attentive-Framework for CO2 Emissions from Livestock), the first unified framework to jointly address per-frame CO2 plume segmentation and clip-level emission flux classification from mid-wave infrared (MWIR) thermal video. TRACE contributes three domain-specific advances: a Thermal Gas-Aware Attention (TGAA) encoder that incorporates per-pixel gas intensity as a spatial supervisory signal to direct self-attention toward high-emission regions at each encoder stage; an Attention-based Temporal Fusion (ATF) module that captures breath-cycle dynamics through structured cross-frame attention for sequence-level flux classification; and a four-stage progressive training curriculum that couples both objectives while preventing gradient interference. Benchmarked against fifteen state-of-the-art models on the CO2 Farm Thermal Gas Dataset, TRACE achieves an mIoU of 0.998 and the best result on every segmentation and classification metric simultaneously, outperforming domain-specific gas segmenters with several times more parameters and surpassing all baselines in flux classification. Ablation studies confirm that each component is individually essential: gas-conditioned attention alone determines precise plume boundary localization, and temporal reasoning is indispensable for flux-level discrimination. TRACE establishes a practical path toward non-invasive, continuous, per-animal CO2 monitoring from overhead thermal cameras at commercial scale. Codes are available at https://github.com/taminulislam/trace.

To date, there is little research on how to design back marks to best support individual-level monitoring of uniform looking species like pigs. With the recent surge of machine learning-based monitoring solutions, there is a particular need for guidelines on the design of marks that can be effectively recognised by such algorithms. This study provides valuable insights on effective back mark design, based on the analysis of a machine learning model, trained to distinguish pigs via their back marks. Specifically, a neural network of type ResNet-50 was trained to classify ten pigs with unique back marks. The analysis of the model's predictions highlights the significance of certain design choices. Most importantly, the set of back marks must be designed such that each mark remains unambiguous under conditions of motion blur, diverse view angles and occlusions, caused by animal behaviour. The generated insights can support individual-level monitoring in future studies and real-world applications by optimizing back mark design.

Organic farming is a key element in achieving more sustainable agriculture. For a better understanding of the development and impact of organic farming, comprehensive, spatially explicit information is needed. This study presents an approach for the discrimination of organic and conventional farming systems using intra-annual Sentinel-2 time series. In addition, it examines two factors influencing this discrimination: the joint learning of crop type information in a concurrent task and the role of spatial context. A Vision Transformer model based on the Temporo-Spatial Vision Transformer (TSViT) architecture was used to construct a classification model for the two farming systems. The model was extended for simultaneous learning of the crop type, creating a multitask learning setting. By varying the patch size presented to the model, we tested the influence of spatial context on the classification accuracy of both tasks. We show that discrimination between organic and conventional farming systems using multispectral remote sensing data is feasible. However, classification performance varies substantially across crop types. For several crops, such as winter rye, winter wheat, and winter oat, F1 scores of 0.8 or higher can be achieved. In contrast, other agricultural land use classes, such as permanent grassland, orchards, grapevines, and hops, cannot be reliably distinguished, with F1 scores for the organic management class of 0.4 or lower. Joint learning of farming system and crop type provides only limited additional benefits over single-task learning. In contrast, incorporating wider spatial context improves the performance of both farming system and crop type classification. Overall, we demonstrate that a classification of agricultural farming systems is possible in a diverse agricultural region using multispectral remote sensing data.

Mounting posture is an important visual indicator of estrus in dairy cattle. However, achieving reliable mounting pose estimation in real-world environments remains challenging due to cluttered backgrounds and frequent inter-animal occlusion. We present FSMC-Pose, a top-down framework that integrates a lightweight frequency-spatial fusion backbone, CattleMountNet, and a multiscale self-calibration head, SC2Head. Specifically, we design two algorithmic components for CattleMountNet: the Spatial Frequency Enhancement Block (SFEBlock) and the Receptive Aggregation Block (RABlock). SFEBlock separates cattle from cluttered backgrounds, while RABlock captures multiscale contextual information. The Spatial-Channel Self-Calibration Head (SC2Head) attends to spatial and channel dependencies and introduces a self-calibration branch to mitigate structural misalignment under inter-animal overlap. We construct a mounting dataset, MOUNT-Cattle, covering 1176 mounting instances, which follows the COCO format and supports drop-in training across pose estimation models. Using a comprehensive dataset that combines MOUNT-Cattle with the public NWAFU-Cattle dataset, FSMC-Pose achieves higher accuracy than strong baselines, with markedly lower computational and parameter costs, while maintaining real-time inference on commodity GPUs. Extensive experiments and qualitative analyses show that FSMC-Pose effectively captures and estimates cattle mounting pose in complex and cluttered environments. Dataset and code are available at https://github.com/elianafang/FSMC-Pose.

The deployment of Multimodal Large Language Models (MLLMs) in agriculture is currently stalled by a critical trade-off: the existing literature lacks the large-scale agricultural datasets required for robust model development and evaluation, while current state-of-the-art models lack the verified domain expertise necessary to reason across diverse taxonomies. To address these challenges, we propose the Vision-to-Verified-Knowledge (V2VK) pipeline, a novel generative AI-driven annotation framework that integrates visual captioning with web-augmented scientific retrieval to autonomously generate the AgriMM benchmark, effectively eliminating biological hallucinations by grounding training data in verified phytopathological literature. The AgriMM benchmark contains over 3,000 agricultural classes and more than 607k VQAs spanning multiple tasks, including fine-grained plant species identification, plant disease symptom recognition, crop counting, and ripeness assessment. Leveraging this verifiable data, we present AgriChat, a specialized MLLM that presents broad knowledge across thousands of agricultural classes and provides detailed agricultural assessments with extensive explanations. Extensive evaluation across diverse tasks, datasets, and evaluation conditions reveals both the capabilities and limitations of current agricultural MLLMs, while demonstrating AgriChat's superior performance over other open-source models, including internal and external benchmarks. The results validate that preserving visual detail combined with web-verified knowledge constitutes a reliable pathway toward robust and trustworthy agricultural AI. The code and dataset are publicly available at https://github.com/boudiafA/AgriChat .

Real-world agricultural monitoring is often hampered by severe class imbalance and high label acquisition costs, resulting in significant data scarcity. In few-shot learning (FSL) -- a framework specifically designed for data-scarce settings -- , training sets are often artificially balanced. However, this creates a disconnect from the long-tailed distributions observed in nature, leading to a distribution shift that undermines the model's ability to generalize to real-world agricultural tasks. We previously introduced Dirichlet Prior Augmentation (DirPA; Reuss et al., 2026a) to proactively mitigate the effects of such label distribution skews during model training. In this work, we extend the original study's geographical scope. Specifically, we evaluate this extended approach across multiple countries in the European Union (EU), moving beyond localized experiments to test the method's resilience across diverse agricultural environments. Our results demonstrate the effectiveness of DirPA across different geographical regions. We show that DirPA not only improves system robustness and stabilizes training under extreme long-tailed distributions, regardless of the target region, but also substantially improves individual class-specific performance by proactively simulating priors.

This paper introduces a benchmark for evaluating whether vision-language models (VLMs) can generate plant simulation configurations from imagery using in-context learning. We study this benchmark for cowpea plot reconstruction for plant simulations, where the VLM needs to generate structured JSON configurations that include field and plant information. Open-source multimodal models from Gemma 4 and Qwen3.5 families are evaluated on a synthetic cowpea dataset with known JSON ground truth and on a real drone orthophoto dataset with field-collected JSON. Five in-context learning methods are used, from format restriction instruction to few-shot image examples with auxiliary grounding information. The results show that VLMs can generate valid JSON outputs, can generally estimate days after planting (DAP), plant counts, plant locations, sun angles, and leaf chlorophyll content, and can render approximate simulations of cowpea plots. Error metrics fluctuate across model families and often remain worse than dataset baselines, particularly when VLMs' pretrained knowledge dominates over weak visual evidence. These results position image-to-simulation JSON generation as a promising but currently challenging task, and establish a benchmark for studying how multimodal reasoning, prompt design, and the sim-to-real domain gap affect plant phenotyping tasks.

Estimating pasture biomass from field images can support grazing decisions without repeated destructive sampling. The task remains difficult because available datasets are small, biomass components are imbalanced and a single photograph contains two spatially distinct views of the sampled quadrat. This work evaluates vision foundation models for five target pasture biomass regression on the 357 image CSIRO dataset. Across 25 model configurations, the analysis covers convolutional and self supervised transformer backbones, seven cross view fusion configurations, models with and without 23 metadata features, classical regressors and frozen foundation features. All comparisons use one locked five fold split and raw scale weighted R^2. DINOv3 Large with cross view gated attention gives the strongest verified single model result, 0.8338 +/- 0.0503 across folds. Under a matched gated depthwise convolution head, replacing DINOv2 Large with DINOv3 Large improves R^2 by 0.0372. Fusion results are not ordered by module complexity. Cross view gated attention is best, while a full Mamba fusion block reaches only 0.7930. Across four matched DINOv3 pathways, metadata narrows the score range from 0.0157 to 0.0013 while changing the mean by only +0.0034. It improves three weaker pathways but lowers the strongest attention model by 0.0061. Classical metadata models are strong, frozen DINOv3 features are linearly useful and Dry Dead biomass remains the hardest target. These results show that backbone choice, cross view interaction and metadata must be tested as separate factors on small agricultural datasets.

Machine learning models in agricultural vision often achieve high accuracy on curated datasets but fail to generalize under real field conditions due to distribution shifts between training and deployment environments. Moreover, most machine learning competitions focus primarily on model design while treating datasets as fixed resources, leaving the role of data collection practices in model generalization largely unexplored. We introduce the AgrI Challenge, a data-centric competition framework in which multiple teams independently collect field datasets, producing a heterogeneous multi-source benchmark that reflects realistic variability in acquisition conditions. To systematically evaluate cross-domain generalization across independently collected datasets, we propose Cross-Team Validation (CTV), an evaluation paradigm that treats each team's dataset as a distinct domain. CTV includes two complementary protocols: Train-on-One-Team-Only (TOTO), which measures single-source generalization, and Leave-One-Team-Out (LOTO), which evaluates collaborative multi-source training. Experiments reveal substantial generalization gaps under single-source training: models achieve near-perfect validation accuracy yet exhibit validation-test gaps of up to 16.20% (DenseNet121) and 11.37% (Swin Transformer) when evaluated on datasets collected by other teams. In contrast, collaborative multi-source training dramatically improves robustness, reducing the gap to 2.82% and 1.78%, respectively. The challenge also produced a publicly available dataset of 50,673 field images of six tree species collected by twelve independent teams, providing a diverse benchmark for studying domain shift and data-centric learning in agricultural vision.

Understanding field imagery such as detecting plants and distinguishing individual crop and weed instances is a central challenge in precision agriculture. Despite progress in vision-language tasks like captioning and visual question answering, Visual Grounding (VG), localising language-referred objects, remains unexplored in agriculture. A key reason is the lack of suitable benchmark datasets for evaluating grounding models in field conditions, where many plants look highly similar, appear at multiple scales, and the referred target may be absent from the image. To address these limitations, we introduce gRef-CW, the first dataset designed for generalised visual grounding in agriculture, including negative expressions. Benchmarking current state-of-the-art grounding models on gRef-CW reveals a substantial domain gap, highlighting their inability to ground instances of crops and weeds. Motivated by these findings, we introduce Weed-VG, a modular framework that incorporates multi-label hierarchical relevance scoring and interpolation-driven regression. Weed-VG advances instance-level visual grounding and provides a clear baseline for developing VG methods in precision agriculture. Code will be released upon acceptance.

In this study, image processing and deep learning methodologies were employed to automatically classify local olive species cultivated in Turkiye. A stereo camera was utilized to capture images of five distinct olive species, which were then preprocessed to ensure their suitability for analysis. Convolutional Neural Network (CNN) architectures, specifically MobileNetV2 and EfficientNetB0, were employed for image classification. These models were optimized through a transfer learning approach. The training and testing results indicated that the EfficientNetB0 model exhibited the optimal performance, with an accuracy of 94.5%. The findings demonstrate that deep learning-based systems offer an effective solution for classifying olive species with high accuracy. The developed method has significant potential for application in areas such as automatic identification and quality control of agricultural products.

This study compares multiple deep learning architectures for the automated, image-based classification of five locally cultivated black table olive varieties in Turkey: Gemlik, Ayvalik, Uslu, Erkence, and Celebi. Using a dataset of 2500 images, ten architectures - MobileNetV2, EfficientNetB0, EfficientNetV2-S, ResNet50, ResNet101, DenseNet121, InceptionV3, ConvNeXt-Tiny, ViT-B16, and Swin-T - were trained using transfer learning. Model performance was evaluated using accuracy, precision, recall, F1-score, Matthews Correlation Coefficient (MCC), Cohen's Kappa, ROC-AUC, number of parameters, FLOPs, inference time, and generalization gap. EfficientNetV2-S achieved the highest classification accuracy (95.8%), while EfficientNetB0 provided the best trade-off between accuracy and computational complexity. Overall, the results indicate that under limited data conditions, parametric efficiency plays a more critical role than model depth alone.

Advances in hyperspectral imaging (HSI) and 3D reconstruction have enabled accurate, high-throughput characterization of agricultural produce quality and plant phenotypes, both essential for advancing agricultural sustainability and breeding programs. HSI captures detailed biochemical features of produce, while 3D geometric data substantially improves morphological analysis. However, integrating these two modalities at scale remains challenging, as conventional approaches involve complex hardware setups incompatible with automated phenotyping systems. Recent advances in neural radiance fields (NeRF) offer computationally efficient 3D reconstruction but typically require moving-camera setups, limiting throughput and reproducibility in standard indoor agricultural environments. To address these challenges, we introduce HSI-SC-NeRF, a stationary-camera multi-channel NeRF framework for high-throughput hyperspectral 3D reconstruction targeting postharvest inspection of agricultural produce. Multi-view hyperspectral data is captured using a stationary camera while the object rotates within a custom-built Teflon imaging chamber providing diffuse, uniform illumination. Object poses are estimated via ArUco calibration markers and transformed to the camera frame of reference through simulated pose transformations, enabling standard NeRF training on stationary-camera data. A multi-channel NeRF formulation optimizes reconstruction across all hyperspectral bands jointly using a composite spectral loss, supported by a two-stage training protocol that decouples geometric initialization from radiometric refinement. Experiments on three agricultural produce samples demonstrate high spatial reconstruction accuracy and strong spectral fidelity across the visible and near-infrared spectrum, confirming the suitability of HSI-SC-NeRF for integration into automated agricultural workflows.

The strawberry (Fragaria x ananassa), known worldwide for its economic value and nutritional richness, is a widely cultivated fruit. Determining the correct ripeness level during the harvest period is crucial for both preventing losses for producers and ensuring consumers receive a quality product. However, traditional methods, i.e., visual assessments alone, can be subjective and have a high margin of error. Therefore, computer-assisted systems are needed. However, the scarcity of comprehensive datasets accessible to everyone in the literature makes it difficult to compare studies in this field. In this study, a new and publicly available strawberry ripeness dataset, consisting of 566 images and 1,201 labeled objects, prepared under variable light and environmental conditions in two different greenhouses in Turkey, is presented to the literature. Comparative tests conducted on the data set using YOLOv8, YOLOv9, and YOLO11-based models showed that the highest precision value was 90.94% in the YOLOv9c model, while the highest recall value was 83.74% in the YOLO11s model. In terms of the general performance criterion mAP@50, YOLOv8s was the best performing model with a success rate of 86.09%. The results show that small and medium-sized models work more balanced and efficiently on this type of dataset, while also establishing a fundamental reference point for smart agriculture applications.

Multimodal methods are widely used in rice deterioration detection, but they exhibit limited capability in representing and extracting fine-grained abnormal features. Moreover, these methods rely on devices such as hyperspectral cameras and mass spectrometers, which increase detection costs and prolong data acquisition time. To address these issues, we propose a feature recalibration based olfactory-visual multimodal model for enhanced rice deterioration detection. A fine-grained deterioration embedding constructor (FDEC) is proposed to reconstruct the labeled multimodal embedded feature dataset, thereby enhancing sample representation. A fine-grained deterioration recalibration attention network (FDRA-Net) is proposed to emphasize signal variations and improve sensitivity to fine-grained deterioration on the rice surface. Compared with SS-Net, the proposed method improves classification accuracy by 8.67%, with an average improvement of 11.51% over other traditional baseline models, while simultaneously simplifying the detection procedure. Furthermore, field detection results demonstrate advantages in both accuracy and operational simplicity. The proposed method can also be extended to other agrifood applications in agriculture and the food industry.

High-resolution phenotyping at the level of individual leaves offers fine-grained insights into plant development and stress responses. However, the full potential of accurate leaf tracking over time remains largely unexplored due to the absence of robust tracking methods, particularly for structurally complex crops such as canola. Existing plant-specific tracking methods are typically limited to small-scale species or rely on constrained imaging conditions. In contrast, generic multi-object tracking (MOT) methods are not designed for dynamic biological scenes. Progress in the development of accurate leaf tracking models has also been hindered by a lack of large-scale datasets captured under realistic conditions. In this work, we introduce CanolaTrack, a new benchmark dataset comprising 5704 RGB images with 31,840 annotated leaf instances collected from 184 canola plants during their early growth stages. To enable accurate leaf tracking over time, we introduce LeafTrackNet, an efficient framework that combines a YOLOv10-based leaf detector with a MobileNetV3-based embedding network. During inference, leaf identities are maintained over time through an embedding-based memory association strategy. When trained directly on each target dataset without prior CanolaTrack fine-tuning, LeafTrackNet achieves HOTA scores of 88.03, 87.33, and 74.20 on CanolaTrack, KOMATSUNA, and MSU-PID, respectively, outperforming the corresponding second-best methods by 8.35, 4.94, and 1.62 HOTA points. This work provides a new benchmark for leaf-level tracking under realistic conditions and introduces CanolaTrack, which, to the best of our knowledge, is the largest leaf-tracking dataset for agricultural crops. Our code and dataset are publicly available at GitHub.