Animal Re-Identification

Generalizable animal Re-Identification (ReID) aims to recognize individual animals across species with diverse morphologies and ecological contexts. Unlike person ReID, where different domains share similar body structures, animal species often exhibit drastically different anatomical structures and visual patterns, making it difficult to establish shared visual correspondences. As a result, representations learned across species tend to form fragmented embedding spaces, which severely limits cross-species generalization. To address this challenge, we propose Semantic Consistency Learning (SCL), a framework designed to learn representations that remain stable across appearance variations while preserving semantic structures shared across species. SCL consists of two complementary components. Foreground-Background Decoupled Spectral Normalization (FDSNorm) stabilizes feature statistics by suppressing environment-induced style variations in a region-aware manner, while Cross-species Neighborhood Modeling (CNM) captures transferable relational structures across species through dynamic feature neighborhoods. Extensive experiments on 11 public animal ReID datasets demonstrate that SCL consistently outperforms state-of-the-art methods under multiple cross-species evaluation protocols and generalizes effectively to previously unseen species and ecological domains. Code is available at https://github.com/Kemalau/ECCV-26-SCL.

Automated pig monitoring is essential for assessing their health, behaviour, and welfare. To date, most pig monitoring solutions operate on the group-level, because individual-level monitoring requires reliable long-term identification and tracking of each animal. For domesticated pigs this remains challenging because pigs of the same breed often have highly uniform appearances. Moreover, research on pig monitoring is almost exclusively reported in top-down view camera settings, which considerably ease tracking, but are not always an option in practice. In this work, BMCTrack-d is presented, a novel tracking-by-detection approach that leverages unique back marks to enable robust pig re-identification and tracking in a challenging side-view camera setting, afflicted by rapidly moving pigs, severe occlusions and low resolution. The method first predicts the detected pigs' identities using a neural network-based back mark classifier. To improve re-identification reliability over time, two dedicated post-processing stages are introduced: a temporal prediction consistency check, which validates the identity assignments against the recent prediction history, and deduplication, which resolves conflicting identity assignments in each time step. By explicitly prioritising accurate, appearance-based re-identification over continuous tracking, the proposed approach addresses a key limitation of existing trackers for individual-level monitoring scenarios. On a demanding test set BMCTrack-d outperforms two strong baselines, BoT-SORT-ReID and TrackTrack-ReID, by 9.11% and 1.03%, respectively, in higher-order tracking accuracy. These results demonstrate the effectiveness of back mark-based re-identification and tracking for robust individual-level pig monitoring in challenging settings.

Fine-grained wildlife classification in aerial imagery is limited not only by model performance, but also by unreliable labels: animals occupy few pixels, key visual cues vary seasonally, and modality-specific evidence can be ambiguous. We study adult-male identification in red deer ($\textit{Cervus elaphus}$), where the antler cycle defines predictable windows of reliable evidence for both annotation and prediction. Using 7,295 RGB-only, thermal-only, and matched RGB+thermal crop sets from low-altitude UAV surveys, labeled by three annotators, we show that seasonal structure links (I) annotation quality, (II) downstream classification, and (III) selective prediction. Matched RGB+thermal review resolves more samples than either single modality, recovering majority-male labels otherwise missed by RGB or thermal alone, in human-based as well as model-based classification. Months with high annotator abstention also show lower classifier confidence, and soft seasonal priors mainly benefit the season-limited thermal view. Uncertainty-band abstention further raises covered accuracy to 98.9%, though at reduced coverage and with deferral that falls disproportionately on males. Overall, a biologically grounded seasonal calendar predicts where annotation and prediction are unreliable, and can guide both annotation protocol design and modality weighting.

AnimalCLEF26 addresses discovery-oriented animal re-identification, where systems must both attach query images to known individuals and discover unseen individuals by clustering them correctly. We present a similarity-to-clustering pipeline for this setting across Eurasian lynx, fire salamander, loggerhead sea turtle, and Texas horned lizard images. The method first isolates the target specimen using segmentation and then applies lightweight species-specific preprocessing for lynx, sea turtle, and salamander images to enhance identity-relevant visual cues, while Texas horned lizard images are used after segmentation only. Pairwise similarities are then estimated with WildFusion by calibrating and combining a MiewID global descriptor with two local matching branches, ALIKED + LightGlue and DISK + LightGlue. The resulting query-query similarities are refined and converted into identity clusters using graph-based clustering, while query-database similarities are used to attach confident samples to known identities. We evaluate training-free and fine-tuned MiewID variants, including Dynamic ArcFace and SphereFace2-Focal adaptations, and combine them in the final ensemble. Our selected ensemble substantially improves on the WildFusion baseline, achieving the best public ARI of 0.72124 and a private ARI of 0.70393, while a simpler preprocessing-before-calibration variant achieves the best private ARI of 0.71087. These results indicate that calibrated global-local fusion with species-aware preprocessing choices is effective for open-set wildlife re-identification under challenging field conditions and visual variation. The implementation code is available on GitHub.

Automated visual monitoring of urban environments is a growing Computer Vision research area, but municipal solid waste detection remains under-represented in dedicated benchmark resources. Existing waste-related datasets predominantly address individual litter detection, aerial imagery, or image-level classification, and none simultaneously provide street-level imagery, instance-level localization, and categorization of domestic waste streams within a structured municipal collection context. This paper introduces the Maltese Domestic Waste Dataset (MDWD), a street-level benchmark comprising 3,697 high-resolution images and 11,461 manually annotated instances across five domestic waste categories representative of Malta's municipal collection system. The dataset captures substantial variation in location, illumination, object scale, occlusion, and urban context. To establish reproducible baselines, a cross-architecture benchmark is conducted across multiple generations of the YOLO family and a transformer-based detector. On the test set, RF-DETR-M achieves the strongest overall performance with an mAP50 of 94.49% and an F1-score of 93.56%, whilst smaller-capacity variants maintain competitive accuracy at substantially reduced parameter counts. These results indicate that MDWD supports effective training across both compact real-time detectors and transformer-based models, establishing a benchmark for future research in vision-based municipal waste monitoring.

Artificial intelligence has shown considerable potential for archaeological applications, yet its use in zooarchaeology remains limited, particularly for the identification of avian skeletal remains. This study presents a proof-of-concept multimodal framework that integrates convolutional neural network-based image analysis with osteometric measurements for the classification of bird bones. Using a dataset of more than 10,000 images from multiple museum and research collections, two classification tasks were investigated: skeletal element identification and family-level taxonomic classification. Prior to classification, images were automatically segmented using a two-stage pipeline combining BiRefNet and SAM2. Visual features extracted with a pre-trained EfficientNet_V2_S backbone were fused with standardized morphometric data through a feature-level multimodal architecture. The model achieved 86% accuracy on the test set for bone-type classification, demonstrating reliable recognition of skeletal elements. Family-level classification proved more challenging, reaching 51% top-1 accuracy but 75% top-3 accuracy, indicating that correct taxa were frequently included among the most probable predictions. These results demonstrate the feasibility of combining visual and morphometric information within a unified deep-learning framework and establish a methodological baseline for future AI-assisted zooarchaeological identification. The approach contributes to ongoing efforts to develop scalable, interpretable, and archaeologically meaningful tools for the study of avian remains.

Animal re-identification (Re-ID) relies on fine-grained identity cues that can be disrupted by blur, noise, compression, and other visual degradations. Existing robustness strategies based on degradation-augmented training or pixel-level restoration improve robustness indirectly, but do not explicitly repair shifts in the identity retrieval space. We study corruption-robust animal Re-ID as input-conditioned feature-space repair and introduce DARA, a lightweight retrofit for compact Re-ID models. DARA freezes the fine-tuned backbone and learns routed low-rank residual experts to adapt degraded-input embeddings without corruption-type annotations. To stabilize this adaptive repair, original-to-corrupted distillation uses an original-image teacher to preserve individual embeddings and retrieval relations. Experiments on ATRW, FriesianCattle2017, MPDD, and SeaStarReID2023 show that DARA improves corrupted-query retrieval over standard and augmentation-based fine-tuning, generalizes to unseen corruptions and cross-domain evaluation, and recovers 77.0% of the corrupted-query mAP gap to full corrupted fine-tuning while adding only 0.49% parameters and 0.05% FLOPs.

Automated individual animal re-identification is essential for large-scale biodiversity monitoring; however, field imagery complicates separating identity cues from nuisance variation in pose, illumination, background, resolution, and species-specific morphology. The DS@GT ARC submission to AnimalCLEF 2026 introduces a multi-species image-clustering system for re-identifying Eurasian lynx, fire salamanders, loggerhead sea turtles, and Texas horned lizards. Instead of relying on a single descriptor or nearest-neighbor retrieval, this approach formulates re-identification as species-aware graph construction over candidate image pairs. The pipeline integrates tailored preprocessing, global candidate retrieval, LightGlue-based local verification with multiple keypoint families, LightGBM pair scoring, conservative edge admission, and Leiden community detection. This design directly addresses a primary failure mode of clustering-based re-identification: high-scoring false pairs that act as bridge edges and merge distinct individuals through transitive closure. Across species, ablation studies demonstrate that local feature support, foreground-aware preprocessing, and species-specific backbone selection enhance pair evidence, while graph operating points determine the trade-off between fragmentation and over-merging. The selected submission achieved a public ARI of 0.733 and a private ARI of 0.674, ranking fifth among 230 teams. These results indicate that robust wildlife re-identification requires not only strong visual representations but also calibrated integration of global similarity, local identity markings, neighborhood context, and graph-level constraints. The code can be found at https://github.com/dsgt-arc/animalclef-2026.

Long-term animal re-identification (ReID) must remain robust to gradual morphological evolution and seasonal appearance shifts. Although recent vision-language models provide strong pretrained visual representations, adapting them to longitudinal ecological settings remains challenging, particularly under identity and temporal distribution shifts. We present a parameter-efficient CLIP adaptation framework for animal ReID and introduce a continuous metadata-conditioning mechanism that incorporates numerical attributes directly into the prompt representation during training. While low-rank visual adaptation, prompt-based supervision, and cross-modal alignment provide the adaptation framework, the proposed metadata-conditioning strategy constitutes the primary methodological contribution. By preserving the continuous structure of numerical metadata rather than discretizing it into textual categories, the proposed approach enables smooth modulation of the embedding space during training while maintaining a purely visual inference pipeline. Experiments on a seven-year longitudinal fish dataset and multiple wildlife benchmarks demonstrate improved performance under closed-set, open-set, and time-aware evaluation protocols. The results demonstrate that continuous metadata conditioning improves robustness to longitudinal appearance variation and temporal distribution shifts, while parameter-efficient adaptation enables a purely visual inference pipeline without requiring metadata at test time. Code and evaluation splits can be found at: https://github.com/AnilOsmanTur/MetaPrompt-ReID.

Gait is a distinctive behavioral characteristic that enables non-invasive individual identification without requiring physical interaction with an animal. While gait-based analysis has been extensively studied in humans, its application to wildlife remains limited due to environmental variability and the lack of scalable identification methods. This paper presents a fully automated, video-based pipeline for wildlife gait analysis and individual identification using deep spatiotemporal representation learning. The proposed pipeline uses the Segment Anything Model 3 (SAM3) to generate high-quality RGB and binary silhouette masks, robustly isolating animals from complex natural backgrounds. Segmented video sequences are processed using a convolutional neural network (ResNet18) for spatial feature extraction and a transformer-based video model (VideoPrism) for temporal motion modeling. Both models are fine-tuned using a classification objective and subsequently used as feature extractors to generate discriminative gait representations. Cosine similarity is then used to compare gait signatures, enabling similarity-based clustering of individuals without reliance on physical markings or invasive tagging. Experiments conducted on multi-source wildlife video data across multiple species demonstrate strong intra-individual consistency and clear inter-individual separation. Quantitative results using cosine similarity distributions and silhouette scores confirm the effectiveness of the proposed method. These findings demonstrate that gait dynamics provide a viable, non-invasive approach for individual identification in wildlife and highlight the potential of video-based deep learning pipelines for scalable ecological monitoring.

Animal re-identification (ReID) in camera-trap surveys remains challenging due to low image quality, strong variation in illumination and viewpoint, and highly imbalanced numbers of observations per individual. As a result, current ReID performance is often insufficient for fully automated use, and practical workflows typically depend on expert review of algorithmically proposed candidate matches. Moreover, most existing approaches focus almost exclusively on visual cues and overlook auxiliary information routinely available in field studies, such as image timestamps and camera-trap locations. We introduce Spotted, a location-informed, human-in-the-loop animal ReID framework that integrates visual similarity with spatio-temporal feasibility priors derived from camera locations, thereby reducing the amount of required expert review. Our method (i) computes an image-model-agnostic feasibility score based on the minimum travel speed required for two detections to correspond to the same individual, (ii) uses these feasibility cues as pseudo-supervision to train a lightweight head on top of a frozen visual foundation model, and (iii) fuses adapted visual similarity with spatio-temporal feasibility to obtain a robust pairwise matching score. We additionally integrate an active pair sampling strategy to accelerate annotation by initially prioritizing uncertain predictions. We evaluate Spotted on three challenging camera-trap ReID datasets comprised of spotted hyenas and leopards, which we release as part of this work. Our model improves average top-5 identification accuracy by 9pp, 2pp and 9pp over the best baseline on our LeopardID102, SpottedHyenaID109 and SpottedHyenaID415 datasets, respectively. Further, we show that our human-in-the-loop strategy reduces the number of queried comparisons by up to 69pp while achieving equivalent positive matches.

Reliable individual re-identification (re-ID) of wildlife is essential for population monitoring, behavioral tracking, and conservation policy evaluation, yet large-scale data collection remains labor-intensive, relying on manual efforts by ecologists or citizen scientists. We propose an autonomous drone navigation system that actively optimizes image capture for downstream re-ID, moving beyond passive aerial sensing. The system combines YOLOv11 object detection with a DINOv2-based pose classifier to guide real-time flight decisions: detecting animals, orienting to expose the lateral flank (the surface of interest for pattern-based re-ID), and approaching until the subject meets a minimum bounding-box threshold. Unlike prior drone systems that optimize for group-level behavioral video, ours targets the specific image-quality requirements of individual-identification models. We demonstrate feasibility through a case study on zebra using footage collected in Kenya, and show the approach generalizes to other species with diagnostic surface patterns, including giraffes, tigers, and elephants. Our work establishes a framework for task-aware embodied AI for ecological data collection, in which downstream re-ID requirements drive real-time perception and control.

Individual animal recognition can be useful in the search for lost or stolen pets, the tracking of individuals of endangered species, and the recognition of animals in crowded farms. Present recognition techniques mostly use physical devices, e.g., microchips, often impractical and difficult to apply. These could be replaced by remote recognition via the animal's face; if accurate enough, it provides several advantages: it is non-invasive, can work at a distance, and is difficult to counterfeit, as, for instance, in the case of substituting sick animals for healthy ones in the food industry. The few existing datasets with sufficient per-subject images annotated with a single animal identity are not large enough to train current deep learning architectures. We rather investigate the possibility of transfer learning, exploiting pre-trained network models as backbones. Our experiments compared FaceNet, which is specifically trained on large databases of human faces, with the Vision Transformer (ViT) pre-trained on ImageNet, i.e., on object categories. We used three face datasets of very different animals: dogs, primates (lemurs, golden monkeys, and chimpanzees), and cattle. We report the results and, for each dataset, compare them with the state of the art (SOTA) ad hoc-trained deep networks. The capture conditions differ among the three datasets. Image quality (resolution, motion blur, diverse poses, etc.) decreases from dogs to cattle to primates. The best performance was achieved with dogs, where ViT reached a mean verification accuracy of 96.85% and a Rank-1 Identification Rate of 84.34%. The results for endangered primates are still encouraging, but performance varies across animal classes and tasks (verification or identification), and does not always outperform SOTA. For cattle, the ViT results outperform SOTA, while FaceNet is still competitive.

Salmon re-identification in commercial net-pens is challenging due to large populations, which impose strict accuracy requirements and make large-scale labeled data acquisition infeasible. Trajectory IDs can be used as proxy labels, but this introduces trajectory-ID bias. To address these challenges, we propose a patch-based re-identification framework that fuses patch-level predictions into a salmon identity decision. A key component is the prediction of the salmon's lateral line, enabling extraction of texture-anchored patches and patch slices. To enable realistic evaluation, we introduce an experimental setup using multiple cameras placed 6 m apart, allowing the same fish to be recorded in different trajectories. This enables the construction of a cross-camera test set through manual match confirmation. Our ensemble approach outperforms the full-image baseline in same-trajectory validation (0.932 to 0.965 mAP) and cross-camera testing (0.609 to 0.860 mAP). The substantial improvements in the cross-camera setting demonstrate improved generalizability and robustness. Code and data: https://github.com/espenbh/salmon-reid-patch-ensemble.

Accurate identification of individual farm animals in group-housed environments is a cornerstone of precision livestock management. However, current industry standards rely heavily on Radio Frequency Identification (RFID) ear tags, which are invasive, prone to loss, and restricted by the spatial limitations of antenna fields. In this paper, we propose a non-intrusive, vision-based identification system leveraging 3D point cloud data captured within a commercial electronic feeding station (EFS). Departing from traditional supervised frame-level inference, we introduce the Temporal Adaptive Recognition Architecture (TARA), a self-sufficient, semi-supervised framework designed to maintain identity consistency over time. TARA employs a dynamic recalibration mechanism that updates individual identity profiles to account for morphological changes in the livestock. To facilitate training in label-scarce environments, we utilize a visit-level majority voting strategy to generate high-fidelity pseudo-labels from raw temporal sequences. Experimental results on a group housed sow dataset collected from an operational commercial barn demonstrate that our approach achieves 100% identification accuracy at the visit level. These results suggest that vision-based 3D point cloud analysis offers a robust, superior alternative to RFID-based systems, paving the way for fully autonomous individual animal monitoring.

Recognizing individual animals over time is central to many ecological and conservation questions, including estimating abundance, survival, movement, and social structure. Recent advances in automated identification from images and even acoustic data suggest that this process could be greatly accelerated, yet their promise has not translated well into ecological practice. We argue that the main barrier is not the performance of the automated methods themselves, but a mismatch between how those methods are typically developed and evaluated, and how ecological data is actually collected, processed, reviewed, and used. Future progress, therefore, will depend less on algorithmic gains alone than on recognizing that the usefulness of automated identification is grounded in ecological context: it depends on what question is being asked, what data are available, and what kinds of mistakes matter. Only by centering these questions can we move toward automated identification of individuals that is not only accurate but also ecologically useful, transparent, and trustworthy.

Wildlife re-identification aims to recognise individual animals by matching query images to a database of previously identified individuals, based on their fine-scale unique morphological characteristics. Current state-of-the-art models for multispecies re- identification are based on deep metric learning representing individual identities by fea- ture vectors in an embedding space, the similarity of which forms the basis for a fast automated identity retrieval. Yet very often, the discriminative information of individual wild animals gets significantly reduced due to the presence of several degradation factors in images, leading to reduced retrieval performance and limiting the downstream eco- logical studies. Here, starting by showing that the extent of this performance reduction greatly varies depending on the animal species (18 wild animal datasets), we introduce an augmented training framework for deep feature extractors, where we apply artificial but diverse degradations in images in the training set. We show that applying this augmented training only to a subset of individuals, leads to an overall increased re-identification performance, under the same type of degradations, even for individuals not seen during training. The introduction of diverse degradations during training leads to a gain of up to 8.5% Rank-1 accuracy to a dataset of real-world degraded animal images, selected using human re-ID expert annotations provided here for the first time. Our work is the first to systematically study image degradation in wildlife re-identification, while introducing all the necessary benchmarks, publicly available code and data, enabling further research on this topic.

Camera-based animal re-identification (Animal Re-ID) can support wildlife monitoring and precision livestock management in large outdoor environments with limited wireless connectivity. In these settings, inference must run directly on collar tags or low-power edge nodes built around microcontrollers (MCUs), yet most Animal Re-ID models are designed for workstations or servers and are too large for devices with small memory and low-resolution inputs. We propose an on-device framework. First, we characterise the gap between state-of-the-art Animal Re-ID models and MCU-class hardware, showing that straightforward knowledge distillation from large teachers offers limited benefit once memory and input resolution are constrained. Second, guided by this analysis, we design a high-accuracy Animal Re-ID architecture by systematically scaling a CNN-based MobileNetV2 backbone for low-resolution inputs. Third, we evaluate the framework with a real-world dataset and introduce a data-efficient fine-tuning strategy to enable fast adaptation with just three images per animal identity at a new site. Across six public Animal Re-ID datasets, our compact model achieves competitive retrieval accuracy while reducing model size by over two orders of magnitude. On a self-collected cattle dataset, the deployed model performs fully on-device inference with only a small accuracy drop and unchanged Top-1 accuracy relative to its cluster version. We demonstrate that practical, adaptable Animal Re-ID is achievable on MCU-class devices, paving the way for scalable deployment in real field environments.