Graph Laplacians

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Period ending 2026-09-07

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A weekly snapshot of new work published in Graph Laplacians.

60 papers

Latest in Graph Laplacians

Sep 21, 2026cs.LG

Topological Signal Processing With Unoriented Operators

Topological signal processing (TSP) processes signals on simplicial complexes with oriented boundary operators, which is the natural choice for flow signals or when the topological invariants play a role for the task at hand. However, many higher-order signals carry no orientation, and applying oriented operators to them is not well-defined since it introduces an arbitrary choice of simplex orientation. We study an unoriented TSP (UTSP) framework that replaces oriented boundaries with unoriented incidence matrices. First, we show that unoriented incidence and Laplacian matrices between arbitrary simplicial levels admit graph-like spectral properties. Second, since dropping orientation removes the Hodge decomposition, we introduce an unoriented counterpart, termed interaction-order decomposition, which quantifies how much of a higher-order signal is explained by aggregating lower-order signals. Third, we use this decomposition to derive regularizers for signal reconstruction that penalize each interaction order separately. Experiments on real-world data show that the order-aware regularizers outperform oriented baselines, with the largest gains when the signal energy is unevenly distributed across orders.
Andrea Cavallo, Varun Sarathchandran, Geert Leus +1
Sep 20, 2026eess.SP

Fast Graph Laplacian Estimation using Effective Resistance

Inferring network topology from noisy node observations is a central problem in graph signal processing. In this paper, we consider Laplacian-constrained graph estimation for Gaussian Markov random fields, focusing on the underdetermined regime in which the number of samples is smaller than the number of graph nodes. Existing approaches often formulate the problem as a sparsity-regularized maximum-likelihood estimation problem. While effective, such methods typically require iterative optimization and are often computationally demanding, particularly under Laplacian constraints. Instead, we propose a non-iterative estimator of graph Laplacians that uses effective resistance for regularization, and evaluate the method using a simple sparsification procedure. Experiments show that with some trade-off in edge and weight recovery on the considered dataset, computational cost for moderately sized graphs can be substantially reduced.
Christoffer Kjellson, Claudio Altafini, Emma Tegling
Sep 3, 2026cs.CV

Laplacian Frequency Hierarchies for Efficient 3D Gaussian Splatting Training

A key bottleneck in 3D Gaussian Splatting training is the continual growth of Gaussian primitives, which increases optimization cost and slows convergence, especially at high resolutions. We propose Laplacian Frequency Hierarchies, a simple yet efficient 3DGS scheme that combines Laplacian image decomposition with coarse-to-fine, frequency-staged training. After fitting lower-frequency structure, we archive the corresponding Gaussian field so that subsequent fields can optimize higher-frequency residuals without carrying the full primitive burden, and we compose the rendered components in the image domain via a Laplacian-style reconstruction at inference time. This design reduces the number of active Gaussians during training, thereby lowering optimization overhead and accelerating training. The proposed scheme is plug-and-play and orthogonal to prior 3DGS accelerations: it can be directly combined with strong backbones such as Taming-3DGS and FastGS to improve training speed with competitive reconstruction quality. It achieves average speedups of 1.73x and 1.21x at 1K setting, and 1.74x and 1.33x at 4K setting on Taming-3DGS and FastGS, with larger gains on more challenging scenes and increasingly pronounced benefits at higher resolutions.
Yixiong Yang, Sisheng Zhang, Qingsong Yan +2
Aug 31, 2026cs.LG

Converse and Collision-Based Achievability for Node Localization with Hybrid Distance-Spectral Graph Positional Encodings

Graph positional encodings are widely used in graph neural networks and graph Transformers, yet it remains unclear when the code itself can identify nodes. We study a hybrid distance-spectral encoding that combines anchor-distance profiles with quantized low-frequency Laplacian-energy coordinates. Treating the encoding as an observation map yields a simplex-refined converse, an exact collision factorization κH=κDκSDκ_H=κ_Dκ_{S|D}, and the collision information IH=logκDlogκSDI_H=-\logκ_D-\logκ_{S|D}. On random regular graphs, the criterion is made explicit through a bounded-correlation Gaussian-wave surrogate; for actual Laplacian-energy coordinates, we give the distance-conditioned spectral collision condition sufficient for conditional actual-coordinate achievability. Experiments show that IH/lognI_H/\log n calibrates localization success, and PE-only structural task probes on Universal Dependencies trees show that hybrid encodings better recover syntactic-tree geometry than distance-only or spectral-only baselines.
Zimo Yan, Yifan Li, Hao Li +4
Aug 13, 2026math.OC

Difference-of-Convex Regularization for Graph Learning by Differentiable Programming

Laplacian-regularized minimization is fundamental in signal processing and machine learning, but is limited by the dense and ill-conditioned nature of the graph Laplacian pseudoinverse. While the Laplacian itself is sparse, its pseudoinverse is dense and often ill-conditioned, rendering direct computation impractical at scale. Moreover, pseudoinverse learning is more challenging than Laplacian learning. To address this challenge, this paper considers the setting where the graph Laplacian is given and proposes a Difference-of-Convex Regularizer (DCR) graph learning framework that approximates the spectral action of the Laplacian pseudoinverse without direct inversion via regularized Maximum Likelihood Estimation (MLE). By reformulating Laplacian-Regularized Nonnegative Least Squares (LR-NNLS) through a dual representation, DCR decouples pseudoinverse learning from instance-specific inference and enables efficient primal solution reconstruction via a differentiable dual-guided learning scheme. We establish theoretical guarantees on stability and the existence of a unique fixed point for DCR algorithm. Numerical experiments demonstrate improved performance over convex solvers and graph filtering baselines and robust performance across diverse graph topologies.
Liping Tao, Chee Wei Tan
Aug 11, 2026stat.ML

Spectral Embeddings of Degree-αα Laplacians in Random Dot Product Graphs

Spectral clustering methods for network data are commonly based on a few matrix representations, such as the adjacency matrix and the symmetric Laplacian. We study a continuum of degree-normalized spectral embeddings that includes these commonly used choices as special cases. Under a random dot product graph model, we establish a row-wise central limit theorem for this family of embeddings. The result provides an explicit description of how degree normalization affects both population geometry and the local uncertainty of embedded nodes. We use the limiting distributions to compare different normalizations in two-community stochastic block models through a projected-Gaussian Bayes-error diagnostic. These comparisons show that no single normalization is uniformly preferred. Instead, the favored normalization depends on network density, community imbalance, and block-probability structure. Typically, stronger normalization is favored in lower-density or more imbalanced settings. These results provide a unified distributional understanding of when and why alternative normalizations may improve spectral clustering.
John Park, Ning Hao
Aug 4, 2026cs.CV

Standalone DINOv3 for Training-Free Open-Vocabulary Semantic Segmentation in Remote Sensing

Remote sensing semantic segmentation is hindered by costly pixel-level annotations, motivating training-free open-vocabulary methods. Recently, the recent release of DINOv3 brings DINO.txt, which equips the standalone DINO backbone with image-text contrastive learning and thus opens up the possibility of open-vocabulary segmentation. We propose DinoSplat-OV, a training-free framework that adapts DINOv3 to remote sensing without fine-tuning or additional pretraining. Targeting the dense distribution, multi-scale nature, and large size of remote sensing imagery, we design two core modules. Its Text-aware Laplacian Propagation module de-noises patch-level predictions by combining textual semantic affinities with local visual similarity, improving regional consistency while preserving boundaries. Its Gaussian Splatting Upsampling module reconstructs pixel-level features through RGB-guided anisotropic aggregation and test-time optimization. A global-anchor sliding-window strategy further supports large-scale imagery. Experiments on UDD5, DOTA, and LoveDA demonstrate competitive or superior performance over existing training-free methods, effectively filling the gap of DINO-series models in training-free open-vocabulary segmentation and providing a viable new path for further advances in this direction.
Changhao Zhao, Haoxiang Li, Yuke Li +2
Aug 1, 2026cs.LG

Nonlinear Laplacians Improve Signed-Directed Graph Learning

While signed-directed graphs have been studied using linear Laplacians in the design of graph neural networks, relatively little research has focused on developing non-linear Laplacian operators for such networks. We introduce a non-linear Laplacian operator specific to signed and directed networks (NLSD). This non-linear operator extends the concepts of the signed Laplacian for signed graphs and the Laplacian for directed graphs. The NLSD calculates node-specific potentials based on features More precisely, if the potential discrepancy is not aligned with the edge direction, we ignore it (and vice versa) leveraging message-passing techniques only across edges where potential discrepancies align with the edge's direction. Utilizing this novel operator, we propose an efficient spectral GNN framework (NLSD-GNN). We conducted comprehensive evaluations focusing on node classification and link prediction, examining scenarios involving signed, directional, or both types of information. Our findings reveal that this spectral GNN framework not only integrates signed and directional data effectively but also achieves superior performance across diverse datasets.
Ali Parviz, Yuichi Yoshida
Jul 25, 2026math.NA

Data-Driven Diffusion Processes on Differential Forms via the Projected Ambient Connection Laplacian

We develop a data-driven approximation of the projected ambient connection Laplacian acting on differential forms over smooth Riemannian manifolds sampled by point clouds. The proposed construction extends the classical framework of diffusion maps and Vector Diffusion Maps from scalar functions and tangent vector fields to differential forms of arbitrary degree. Our approach is based on a novel representation of differential forms as alternating differential arrays obtained through an extension of the classical musical isomorphism. This representation enables the construction of a matrix-valued diffusion operator that approximates the projected ambient connection Laplacian directly from point cloud data without requiring a mesh or simplicial complex. The proposed discretization admits the asymptotically optimal kernel bandwidth scaling inherited from diffusion maps, leading to sharper convergence guarantees than previous data-driven approximations of the Hodge Laplacian. Building upon this operator, we derive a fully data-driven explicit Euler scheme for the heat equation on differential forms and validate the proposed methodology through numerical experiments on the unit sphere. The experiments confirm the predicted decay of the analytical solution and demonstrate the effectiveness of the proposed discretization. The proposed framework provides a natural generalization of Vector Diffusion Maps to differential forms of arbitrary degree and establishes a practical foundation for the numerical approximation of geometric partial differential equations directly from point cloud data.
Alvaro Almeida Gomez, Jorge Duque Franco
Jul 23, 2026cs.LG

Filter Learning for Subgraphs: Algebras and Performance Risk Bounds

Graph signal processing tasks that leverage spectral information typically assume access to the complete graph topology, which is often unavailable in practice. We propose a systematic framework for subgraph filter learning (SFL), where subgraph-supported operators approximate ambient graph filters under partial observations. We formulate SFL as a statistical learning problem in which optimal subgraph operators are inherently data-dependent. To address the difficulty of directly estimating such operators, we develop a subgraph filter algebra based on distance-aware Laplacian constructions, defining a structured and controllable class of filters for effective approximation. We further establish performance risk bounds under the least squares loss, quantifying how well the learned operator approximates the restricted ambient mapping. Experiments real-world datasets show that, for SFL tasks, the proposed algebraic models consistently outperform polynomial filters, distribution-agnostic operators, and direct numerical filter learning baselines that attempt to recover the underlying structure from data.
Purui Zhang, Feng Ji, Yanan Zhao +2
Jul 18, 2026cs.MA

Laplacian Spectral Shaping for Non-Uniform Scaling Formation Control of Open Multi-Agent Systems

Non-uniform scaling control enables a multi-agent formation to adjust its shape by compressing or stretching independently along different coordinate axes through inter-agent interactions, offering high flexibility in complex environments. The fundamental idea is encoding the desired formation shape as the kernel of a matrix-valued Laplacian. In open multi-agent systems, however, changes in number of agents, number of edges, and leader selection dynamically alter this Laplacian, destroying the required spectral properties: positive semidefiniteness, correct kernel, and positive definiteness of the follower block (we summarize these properties as the formation spectrum). In this paper, we develop distributed protocols to strategically adjust partial weights of the Laplacian matrix for formation control in arbitrary dimensional space. By implementing the protocols, the desired formation spectrum can be preserved under dynamic topology changes including agent joining, edge addition, agent leaving, and edge removal, while any pair of agents can serve as leaders. Unlike existing Laplacian design methods for affine formation control under topology changes, the proposed approach requires a sparser sensing graph, avoids a predefined parent-child hierarchical structure, and supports leader reassignment. The effectiveness of the proposed protocols is validated through both theoretical analysis and numerical simulations.
Tao He, Gangshan Jing
Jul 12, 2026cs.LG

From Self-Attention to Connection Laplacian: A Unified Operator View of Transformers

Self-attention is a ubiquitous primitive in modern sequence models, yet its operator-level geometry is only partially understood. We view a token sequence as a vector field over the token-position graph and identify attention as a connection walk: messages are aggregated by a nonnegative walk matrix while being transported along each edge by a learned linear map. Within this framework, we prove that single-head attention (SHA) is exactly a connection propagation step with constant transport, and that multi-head attention (MHA) is exactly a single edge-dependent connection walk whose effective transport is an attention-gated mixture of headwise transports. We further clarify the conditions under which the corresponding generator reduces to a random-walk connection Laplacian, highlighting the roles of stochasticity, reversibility, and metric-compatible transports. Empirically, we find that trained Transformers across scales (from 124M to 8B) and structures (encoder/decoder) exhibit geometric structure consistent with our theory: effective attention graphs converge to stable geometric operators in deeper layers, learned transports self-organize into approximate scaled isometries, and both phenomena strengthen consistently with scale. Overall, the paper provides a precise connection-walk formalism that links self-attention to classical geometric operators, along with a set of operator-level tools for analyzing transformer models from a geometric perspective.
Binbin Lin, Wei Chen, Yalun Li +3
Jul 11, 2026cs.LG

Mathematics of Data Science

This book is about the mathematical foundations of data science. 1. Introduction 2. Curses, Blessings, and Surprises in High Dimensions 3. Singular Value Decomposition and Principal Component Analysis 4. Linear Regression and Regularization 5. Graphs, Networks, and Clustering 6. Nonlinear Dimension Reduction and Diffusion Maps 7. Linear Dimension Reduction via Random Projections 8. Optimization for Data Science 9. Classification 10. A Mathematical Introduction to Deep Learning 11. Large Sample Limit of Graph Laplacians 12. Community 13. Concentration of Measure and Gaussian Analysis 14. Matrix Concentration Inequalities 15. Compressive Sensing and Sparsity 16. Low-Rank Matrix Recovery
Afonso S. Bandeira, Amit Singer, Thomas Strohmer
Jul 9, 2026cs.LG

Group Invariant Spectral Embedding

Spectral embedding methods are widely used for dimensionality reduction and clustering of high-dimensional datasets with intrinsic low-dimensional structures. Although many datasets of practical interest exhibit invariance under symmetries such as rotations, standard spectral embedding methods do not account for this, treating symmetry-related data points as unrelated. Our approach to this problem is to incorporate the symmetries directly into the affinity kernels used for spectral embedding. We analyze the case of a Riemannian data manifold MM with symmetries given by a compact Lie group~GG and prove that, under suitable conditions, graph Laplacians constructed from three types of invariant kernels converge pointwise to explicit second-order differential operators on the quotient space M/GM/G. Our analysis implies improved convergence rates, as the effective dimension drops according to the dimension of the group. We validate our approach on datasets with SO(2)\mathrm{SO}(2) or SO(3)\mathrm{SO}(3) symmetry, and show that GG-invariant spectral embedding recovers the intrinsic geometry of the data, in contrast to standard spectral embedding, which fails to do so even in the limit of infinite data.
Yeari Vigder, Paulina Hoyos, David Thong +3
Jul 9, 2026cs.CV

LDFE: Laplacian Decoupled Feature Enhancement Block for Dual-Stream CNN-based RGB-IR Object Detection

The complementary information between RGB and IR images can significantly enhance object detection performance under extreme conditions. Existing methods prefer dual-stream CNN backbones built upon YOLO for feature extraction and focus on the design of feature fusion. In this paper, we introduce the Laplacian Decoupled Feature Enhancement block (LDFE) to fuse features from different stages of the dual-stream CNN backbone. By design, LDFE simultaneously considers the characteristics of modalities and structures for feature fusion by employing global-local decomposition, denoising, fusion, and reconstruction, sequentially. The LDFE first separates features into global and local components based on Laplacian Pyramid, and then performs denoising and fusion based on Global State Space Enhancement module (GS2E) and Local Convolutional Correlation Enhancement module (LC2E) separately. Specifically, the GS2E conducts a two-branch architecture for the main and auxiliary modalities. It dynamically suppresses noise in the main modality through cross-modal attention derived from the auxiliary modality, while employing a State Space Model to capture long-range dependencies within the global feature representations of the main modality. To obtain bidirectional interaction, the two modalities systematically alternate their main/auxiliary roles. Moreover, the LC2E suppresses noise in local features and leverages spatial and channel dimension along with triple convolution to extract fine-grained details for fusion. These innovative designs achieve a significant performance improvement, with mAP surpassing the SOTA methods 6.2%, 3.7%, 4.7%, 2.3%, 4.1% and 2.0% on M3FD, DroneVehicle, LLVIP, FLIR-Aligned, KAIST and VEDAI datasets,respectively.
Wenhao Dong, Xiaoyan Luo, Linlin Yang +4
Jul 8, 2026cs.LG

Eigenbasis-Independent Learnable Spectral Positional Encodings for Directed Graphs via Hermitian Block Krylov Subspaces

Spectral positional encodings (PEs) for \emph{directed} graphs face two obstacles: magnetic Laplacians require an O(n3)O(n^3) Hermitian eigendecomposition per potential, and their complex eigenvectors are defined only up to unitary gauge, which prior work handles with basis-invariant architectures. We propose learnable spectral PEs of the form hθ(Aq)Rh_θ(A_q)\,R, where AqA_q is a normalized magnetic operator, hθh_θ a learnable scalar spectral response, and RR a block of random probes. Because the PE is a \emph{matrix function} of the operator, it is gauge-invariant by construction. We compute it in a Hermitian block Krylov subspace from sparse matrix--vector products only, prove that k=O(log(1/ε))k = O(\log(1/\varepsilon)) block steps suffice uniformly over heat--resolvent response families, and give a covering-number argument for why low-dimensional structured families generalize where free per-eigenvalue weights overfit. On a directed SBM whose symmetrization is uninformative by construction, direction-blind PEs stay at chance while magnetic Krylov PEs converge to the exact-eigendecomposition oracle as the depth grows. The same probes yield gauge-invariant pairwise features with 1/s1/\sqrt{s} Monte-Carlo error, and the undirected q=0q{=}0 case improves heterophilous benchmarks over no-PE and polynomial baselines.
Jiaqing Xie, Yuxin Wang
Jul 7, 2026stat.ML

On the convergence of graph Laplacians with a symmetric divergence

When analyzing a manifold learning algorithm for data lying on a smooth, compact, connected Riemannian submanifold (M,g)(\mathcal{M}, g) of Rd\mathbb{R}^d, a key estimate for the geodesic distance dgd_g is that there exists K>0K > 0 such that 0dg(p,q)2pq2Kdg(p,q)40 \leq d_g(p, q)^2 - \|p-q\|^2 \leq K d_g(p, q)^4 for all p,qMp, q \in \mathcal{M}. We observe that more generally, when M\mathcal{M} is equipped with a smooth symmetric divergence DD satisfying a non-degeneracy condition and gg is given by gp:=12Hessp(D(p,))g_p := \frac{1}{2}\mathrm{Hess}_p(D(p, \cdot)) for all pMp \in \mathcal{M}, there exists K>0K > 0 such that D(p,q)dg(p,q)2Kdg(p,q)4\left| D(p, q) - d_g(p, q)^2 \right| \leq K d_g(p, q)^4 for all p,qMp, q \in \mathcal{M}. We demonstrate that this is sufficient for the pointwise convergence of graph Laplacians constructed with DD and discuss examples where DD is given by the Sinkhorn divergence on a family of probability measures parametrized by a manifold.
Liane Xu
Jul 3, 2026cs.LG

A Near-Linear-Time Solver for Graph pp-Laplacian Semi-Supervised Learning via Continuation in pp

Graph-based semi-supervised learning (SSL) propagates a few labels over a similarity graph by minimizing a Dirichlet-type energy. The standard quadratic (p=2p=2) energy reduces to a single graph-Laplacian solve, but it degenerates exactly where SSL is most useful when labels are scarce: gathering more unlabeled data drives the p=2p=2 estimate to a near-constant function whenever d2d\ge2 (Nadler-Srebro-Zhou). Well-posedness requires the nonlinear pp-Laplacian energy with p>dp>d. Existing solvers reduce this to a sequence of weighted Laplacian solves, but their reference implementations use a direct sparse factorization or ichol-preconditioned CG instead. Plugging a near-linear Laplacian solver is not straightforward: at large pp the conductance weights degenerate near flat-gradient edges, making the system nearly singular and causing stagnation without a damped outer iteration. We close this gap. Recasting pp-Laplacian SSL as a source-form nonlinear Laplacian flow Bρp(Bx)=bBρ_p(B^\top x)=b and solving by damped chord-Newton continuation in pp, every linearized system stays well-conditioned and can be delegated to a near-linear Laplacian engine. On size-scaled graph families the wall-clock is empirically m0.96m^{0.96}-m1.02m^{1.02} per family (approximate Cholesky default), and a pooled fit across 228 SuiteSparse graphs gives m1.19m^{1.19} vs.\ m1.45m^{1.45} for direct factorization; the solver handles a 6.8×1076.8\times10^7-edge social network in minutes. Memory is the binding constraint: Cholesky fill reaches 1010-280×280\times the graph nonzeros vs.\ our O(m)O(m) hierarchy. Against the released FCL solver we are 1.51.5-14×14\times faster at matched accuracy. On MNIST 1010-NN, p=3p=3 scores 64%64\% at one label per class vs.\ 36%36\% for p=2p=2. Code: https://github.com/orenlivne/np.
Oren E. Livne
Jul 3, 2026q-bio.QM

Recovering Candidate Circadian Regulators of Arrhythmic Pituitary Hormone Genes Using Reliability-Weighted Magnetic Laplacian with rwMagLap

We study how to recover candidate circadian-clock regulators of pituitary hormone genes that are important for women's health but do not show a clear 24-hour rhythm in bulk tissue, aiming to nominate clock-linked regulatory targets that could inform future chronopharmacologic and chronotherapeutic strategies. We propose \textbf{rwMagLap}, which builds a graph on rhythmic backbone genes. For each edge, we combine 24-hour fit quality with peak-time phase, represented as a complex unit-circle value, yielding a Hermitian adjacency matrix and a magnetic Laplacian. We insert arrhythmic hormone genes, treated as anchors, by a reliability-weighted nearest-neighbor projection. The projected anchor-neighbor weights are pooled into a soft teleport distribution, and complex personalized PageRank then ranks rhythmic backbone genes by the magnitude of their PageRank scores. In pituitary data, we find that all 11 women's-health anchors are arrhythmic. Even so, we find that the top-50 list is 7.95×7.95\times enriched for the 13-gene KEGG circadian set (7 of the 8 set genes in the 454-gene backbone; corrected Benjamini-Hochberg (BH) pBH=4×106p_{\mathrm{BH}}=4\times10^{-6}) and 4.54×4.54\times enriched for the 111-gene Reactome set (8 of 16 genes; pBH=1.6×104p_{\mathrm{BH}}=1.6\times10^{-4}), while a phase-blind real-valued baseline recovers none. We recover candidates through reliability weighting and phase-aware seeding rather than through magnetic propagation. The magnetic phase adds a different capability: it represents temporal order. On pituitary backbone, the magnetic embedding recovers measured peak-time order of connected pituitary genes with accuracy 0.9710.971, while q=0q{=}0, i.e., no magnetic charge, is at chance.
Shabnam Sodagari, Nick Jasperson
Jun 25, 2026cs.LG

fTNN: a tensor neural network for fractional PDEs

We develop the fTNN, a deterministic tensor neural network subspace method for problems involving the fractional Laplacian on bounded domains, taking the fractional Poisson equation and time-dependent fractional advection-diffusion equation as typical representatives. The work employs a geometry-adapted integration split featuring a spatially dependent near-field radius, which decomposes the fractional Laplacian into three contributions: a singular near field, a regular interior far field, and an analytical exterior far field. Then the singular radial integrals are treated by Gauss-Jacobi quadrature, the regular radial integrals by Gauss quadrature, and the angular variables by deterministic angular quadrature, yielding a fully deterministic integration framework of the fractional Laplacian operator. To accurately resolve low-regularity solutions and the associated loss functional, we construct boundary-singularity-aware trial functions enriched with explicit boundary features, and propose two strategies for automatically selecting the leading exponent and evaluating the loss function from the singularity structure induced by the fractional operator, or jointly by the fractional operator and the source term. For time-dependent fractional PDEs, we design a spatiotemporally separable neural network that factorizes the time-space residual into a sum of low-dimensional temporal and spatial integrals, and we integrate this representation with an alternating neural network subspace optimization strategy for efficient training. Numerical experiments show that the proposed framework attains high accuracy on the tested benchmarks and improves substantially over existing fPINN and Monte Carlo baselines, particularly for problems with strong boundary singularities and long-time simulations.
Qingkui Ma, Hehu Xie, Xiaobo Yin
Jun 25, 2026cs.CV

Coarse-to-Fine: A Hybrid Self-Supervised Method for Non-rigid 3D Shape Matching

Non-rigid 3D shape matching is a fundamental task in computer vision and graphics. In this paper, we propose a hybrid self-supervised method based on a coarse-to-fine strategy, which ensures consistency between the coarse mapping and the refined correspondence produced by our refinement module. The architecture features a dual-branch design, consisting of two symmetric functional map learning streams: one based on the Laplacian basis and the other utilizing the elastic basis. Extensive experiments show that our approach not only maintains computational efficiency, but also achieves state-of-the-art performance across a variety of challenging scenarios, including non-isometric deformations and topological noise. Finally, we rigorously demonstrate that contrastive energies promote feature discrimination. Furthermore, integrating these energies with existing methods yields consistent improvements, validating the overall efficacy of our approach. Our code is available at https://github.com/LuoFeifan77/Coarse-to-Fine-Hybrid-Self-Supervised-Matching.
Feifan Luo, Ting Li, Zhao Li +1
Jun 23, 2026cs.AI

Can Aggregate Invariants Accelerate Continuous Subgraph Matching? Limits, Laws, and a Dynamic Spectral Index

Spectral filtering recently delivered substantial pruning for \emph{static} subgraph matching: Laplacian interlacing rejects candidates whose neighborhoods cannot host the query. We study whether such aggregate structural tests can accelerate \emph{continuous} subgraph matching (CSM) over dynamic graphs, and answer in three parts. First, lazily maintained spectral bounds are infeasible exactly where spectral pruning has value: we characterize the tightest safe rule over a formalized perturbation relaxation and show that even it loses essentially all pruning power within four touching updates. Second, exact maintenance is affordable when selective: pruning utility and recomputation cost are anti-correlated across vertices -- hubs provably never prune -- so recomputing small-neighborhood spectra on touch sustains exact local spectra at microseconds per update, complete by construction. Third, integrated into a decoupled CSM benchmark against an identical-minus-spectra control, the tests remove up to 51%51\% of candidates or safely skip up to 47%47\% of update enumerations, yet enumeration intermediates remain unchanged -- beyond the gates' skipped first-level bindings, typically zero -- across two engines, four real graphs, two stream types, and 7777 solved queries; a constructed radius-stratified workload confirms the instrument detects the exception when one exists (99.9%-99.9\% intermediates, 748×748\times faster). Aggregate tests accelerate what scales with candidate sets -- construction, list scans -- never adjacency-guided exploration. We distill an intermediate-invariance methodology for evaluating CSM filters and release a reusable dynamic local-spectra index.
Minghao Chen, Jiale Zheng
Jun 22, 2026cs.LG

Collapsed Effective Operators for Higher-order Structures

Higher-order structures are powerful relational modeling tools, yet existing spectral operators decompose the topology into separate ranks, leaving practitioners to fuse the information back to vertices through ad hoc choices. We introduce Collapsed Effective Operators, which condense higher-order degrees of freedom into a single vertex-level operator via Schur complementation of a graded Laplacian. This yields a (generally dense) operator that encodes long-range interactions mediated by topology and is applicable to arbitrary higher-order constructs. We show it preserves positive semi-definiteness with a spectral upper bound relative to the rank-0 Hodge Laplacian, effectively lowering system energy under higher-order connectivity. Empirically, our operator improves spectral clustering, signal smoothing, and enables the inclusion of topological features in neural network architectures via positional encoding. The project page can be found http://circle-group.github.io/research/CollapsedEffectiveOperators
Maximilian Krahn, Lennart Bastian, Vikas Garg +2
Jun 18, 2026cs.LG

Hierarchical Pooling for Sheaf Neural Networks

Sheaf Neural Networks (SNNs) generalize Graph Neural Networks (GNNs) by replacing scalar node signals with stalk-valued signals and by using restriction maps to measure compatibility across edges. Unlike standard graph diffusion, which encourages neighboring node features to become similar, sheaf diffusion promotes consistency through the restriction maps and can therefore model more general relationships between neighboring nodes. However, existing sheaf neural architectures mainly operate at a fixed graph resolution and do not provide a principled pooling mechanism for building hierarchical representations. In this paper, we introduce Hierarchical Sheaf Pool (HiSP), a sheaf-aware pooling framework based on local spectral coarsening. Given a partition of the graph, HiSP constructs each coarse stalk by projecting fine stalk-valued features onto the low-frequency eigenmodes of the cluster-internal sheaf Laplacian. These local modes define a cochain-level prolongation map, which allows the fine sheaf energy to be represented on the coarse space through a Galerkin operator. We further analyze the approximation induced by coarsening by separating truncation loss, due to discarded local modes, from realization loss, due to representing the projected operator as a coarse sheaf. Finally, we implement HiSP as a GNN pooling layer compatible with SNNs and provide a PyG implementation supporting batching, lifted sheaf Laplacians, and hierarchical architectures.
Dionisia Naddeo, Carlo Abate, Pietro Liò +2
Jun 17, 2026cs.LG

Thermodynamic Signatures of Reasoning: Free-Energy and Spectral-Form-Factor Diagnostics for Hallucination Detection in Large Language Models

Hallucination detection in large language models (LLMs) is deployment-critical, and recent work shows that the spectrum of attention-derived graph Laplacians carries strong signal about reasoning quality. Prior spectral diagnostics, however, summarize the Laplacian spectrum by a handful of eigenvalues or hand-picked scalars, leaving most of its structure unused. We propose Free-Energy Signatures (Fes), a spectral descriptor that treats each layer's attention Laplacian as a Hamiltonian and extracts its thermodynamic potentials partition function, free energy, spectral entropy, heat capacity together with the random-matrix-theory (RMT) spectral form factor. We prove three results: (i)~Lipschitz stability of Fes under attention perturbation; (ii)~an expressiveness result showing that Fes enriches finite spectral summaries and approximates moment-derived spectral functionals under explicit regularity and grid-resolution assumptions; and (iii)~a finite-sample PAC bound on the AUROC of a training-free detector built from Fes. Empirically, across six open-weight LLMs and six benchmarks, a lightweight probe on Fes descriptors achieves the strongest aggregate AUROC among attention-spectral baselines, improving over LapEig by +6.5+6.5 AUROC points and over GoR-4 by +2.4+2.4 points on average, while requiring no update to the underlying LLM. In the fully unsupervised setting, an RMT-deviation score achieves mean AUROC 0.710.71, providing a label-free but weaker detector. A complementary RMT analysis shows that correct generations exhibit more Wigner-Dyson like spectral statistics, whereas hallucinations exhibit more Poisson-like statistics. The anonymized code and config are provided in the supplementary material.
Salim Khazem
Jun 16, 2026stat.ML

Geometrical fairness in graph neural networks

Graph-based learning methods have become increasingly prominent due to their strong performance across diverse applications. Among these, recent frameworks grounded in diffusion processes provide a unifying perspective that extends traditional graph neural network formulations while addressing limitations of standard message-passing mechanisms. Despite these advances, concerns remain regarding the fairness of such models, as they may propagate or amplify biases present in the data. In this work, we introduce a fairness-aware adaptation of graph-based diffusion by modifying the underlying Laplacian operator. Our approach incorporates multiple complementary transformations, including subspace projections, spectral adjustments, and frequency-based filtering, to mitigate bias-related components. Leveraging the intrinsic smoothing properties of graph diffusion, we provide a principled analysis of the resulting behavior and establish theoretical insights into fairness properties. We evaluate the proposed framework on both synthetic and real-world datasets, demonstrating that it achieves competitive performance while improving fairness metrics with limited additional computational cost.
Arturo Pérez-Peralta, Sandra Benítez-Peña, Blas Kolic +1
Jun 15, 2026cs.LG

Finsler Geometry, Graph Neural Networks, and You

Graph neural network architectures based on the graph Laplacian approximate the Laplace-Beltrami operator, thus limiting their application to isotropic operators. As a nonlinear alternative to the Laplace-Beltrami operator, we consider estimates of the Finsler Laplacian on point clouds sampled from a manifold. We prove that these discrete estimates converge to the true operator on the manifold as the number of point samples grows. Moreover, we show that this operator can be expressed as a graph neural network layer, which we use to define a family of Finslerian graph neural networks constrained to express Finsler geometry. We show that Finslerian graph neural networks recover the geometry underlying nonlinear diffusion equations in practice.
T. Mitchell Roddenberry, Richard G. Baraniuk
Jun 15, 2026cs.LG

Analytic Torsion and Spectral Gap Capture Persistent-Laplacian Performance

While persistent Laplacians (PL) offer a richer geometric representation of data than persistent homology, utilizing their full eigenspectrum for learning tasks is often hampered by high dimensionality and the ``varying length'' problem across different filtration scales. We propose a compact spectral representation that distills the persistent Laplacian into three mathematically grounded invariants: Betti numbers, the spectral gap, and analytic torsion. Across benchmark datasets including MNIST, QM-3D, and SKEMPI WT, we demonstrate that this reduced feature space captures the essential predictive signal of the full spectrum, and in some cases outperforms it, while significantly reducing computational overhead and preventing the noise introduced by higher-frequency eigenvalues. Our results suggest that these invariants provide a principled, fixed-length interface between spectral geometry and topological learning.
Jernej Grlj, Aaron D. Lauda
Jun 11, 2026cs.LG

Understanding Truncated Positional Encodings for Graph Neural Networks

Positional encodings (PEs) enhance the power of graph neural networks (GNNs), both theoretically and empirically. Two of the most popular families of PEs - spectral (e.g., Laplacian eigenspaces, effective resistance) and walk-based (polynomials of the adjacency matrix) - are theoretically equivalent in expressive power, with expressivity between the 1-WL and 3-WL tests. However, this equivalence assumes the GNN uses the "complete" version of these PEs, which requires O(n3)O(n^3) time and space complexity. Instead, practitioners commonly use truncated variants of these encodings, such as the first kk eigenspaces or powers of the adjacency matrix. However, the theoretical properties of these truncated PEs are unknown. In this work, we initiate the study of these truncated PEs. Theoretically, we show that, under truncation, several families of PEs are fundamentally different in expressive power. As a corollary, we show that truncated spectral PEs are no longer stronger than the 1-WL test. We also study a family of spectral PEs, the kk-harmonic distances, to highlight the differences in expressive power of even closely related truncated PEs. Finally, we experimentally show that a mix of truncated PEs is preferable to any single family on real-world datasets.
James Flora, Mitchell Black, Weng-Keen Wong +1
Jun 6, 2026cs.CV

LEGS: Laplacian-Enhanced Gaussian Splatting with a Nonlinear Weighted Loss

3D Gaussian Splatting (3DGS) has become an efficient explicit representation for radiance field reconstruction and real-time novel view synthesis. However, its standard photometric loss treats flat and structure-rich regions similarly, which may limit the recovery of sharp contours and fine details. Edge-Guided Gaussian Splatting (EGGS) improves structure awareness through edge-guided weighting, but mainly relies on first-order gradient responses and linear weighting. In this paper, we propose LEGS, a Laplacian-Enhanced Gaussian Splatting method with a nonlinearly weighted loss. LEGS replaces first-order gradient guidance with second-order Laplacian structural guidance and maps the normalized Laplacian response into pixel-wise weights through nonlinear response-to-weight functions. The proposed loss improves structure-aware Gaussian optimization while keeping the original 3DGS rendering pipeline unchanged. Experiments on the full Tanks&Temples and Mip-NeRF360 datasets show that LEGS improves peak signal-to-noise ratio (PSNR) by up to 1.68 dB over 3DGS and up to 0.52 dB over EGGS. Incorporating the proposed second-order nonlinear weighting strategy into FastGS and FasterGS further improves PSNR by up to 1.69 dB, demonstrating its effectiveness as a general loss-level extension for Gaussian Splatting pipelines with potential applications in AR/VR, immersive visualization, and real-time 3D content generation.
Yongfei Guo, Qizhou Huo, Xuan Sun +1
Jun 3, 2026math.NA

Fitting scattered data with optional monotonicity constraints on GPU: LipFit package

This paper presents a method of multivariate scattered data interpolation and approximation that produces optimal Lipschitz-continuous approximation, subject to the desired monotonicity constraints. This method relies on tight upper and lower approximations to the data, and is similar in its spirit to the nearest-neighbour approximation but does not suffer from discontinuities. Local Lipschitz interpolation and Lipschitz smoothing are also presented. This approach falls under the umbrella of instance-based approximation with no training phase, and it is suitable for GPU-based parallelisation. A Python GPU-friendly package LipFit which implements the methods discussed is discussed.
Gleb Beliakov
Jun 1, 2026cs.LG

A Nonmonotone Gradient-Based Algorithm for Symmetric Nonnegative Matrix Factorization and Graph Clustering

Symmetric nonnegative matrix factorization (Symmetric NMF) approximates a matrix as WWTWW^T with nonnegative rectangular factor WW. It has broad applications in graph clustering and machine learning. In contrast to the NMF, projected gradient methods for the symmetric problem had been associated with slow convergence. To address this, we introduce SNMPBB, the first adaptation of nonmonotone projected Barzilai-Borwein methods to Symmetric NMF, demonstrating that gradient algorithms are significantly more effective than previously understood. We further extend SNMPBB to graph clustering using the graph Laplacian regularization (Graph-SNMPBB) and to large problems with low-rank approximations (LAI-SNMPBB). For all variants we prove global convergence to first-order stationary points and also that Barzilai-Borwein curvature information is preserved with randomized approximations. On synthetic data, SNMPBB achieves 6 times speedup over the alternative SymANLS for similar residuals, with advantages growing at higher ranks. Across six real-world clustering benchmarks, Graph-SNMPBB matches or exceeds SymANLS accuracy. Lastly, LAI-SNMPBB outperforms state-of-the-art LAI-SymPGNCG on 34 SuiteSparse matrices in both runtime and residual quality.
Ryan Swart, Johannes Brust
May 28, 2026eess.SY

Distributed Non-Uniform Scaling Control of Multi-Agent Formation with Dynamic Agent Joining

Non-uniform scaling control of formation enables multi-agent systems to adjust their shape by scaling with different ratios along different coordinate axes, offering enhanced flexibility in complex environments. However, like most existing formation maneuver strategies, it typically assumes a fixed set of agents, limiting its applicability in scenarios requiring dynamic team expansion. This paper introduces a distributed control framework that enables a formation to incorporate new agents during non-uniform scaling maneuvers in arbitrary dimensions while preserving the spectral properties of the graph Laplacian. Simulation examples validate the effectiveness of the theoretical results.
Tao He, Gangshan Jing
May 27, 2026cs.CV

Anomaly as Non-Conformity via Training-Free Graph Laplacian Energy Minimization

Detecting subtle visual anomalies in images remains challenging, particularly when only normal samples are available a priori. Such unsupervised anomaly detection is typically solved by measuring feature similarity of a query patch to a memory of normal patches. However, similarity alone does not reveal how strongly a query patch violates the structure of the normal feature manifold. We propose a training-free Laplacian graph energy optimization formulation, named ANoCo that scores Anomaly by the cost of Non-Conformity of a query patch to align with a fixed normal manifold. For each query patch, we construct a bipartite query to normal graph weighted by cosine affinity, explicitly removing query-query and normal-normal edges to prevent evidence dilution. We formulate anomaly scoring as a convex Laplacian energy with anchored normal nodes, and solve in closed form. In particular, we do not use the optimized features themselves-the anomaly score is the magnitude of the update required to satisfy normality constraints, reframing the graph Laplacian as a non-conformity operator rather than a smoothing prior. The proposed method introduces no learnable parameters, message passing, or sampling, and has complexity comparable to a single linear solve. Across standard benchmarks, it delivers strong image-level AUROC, stable localization maps, and improved robustness over prior methods, demonstrating the effectiveness of using optimization-induced feature drift as anomaly measure.
Jungwook Seo, Minjeong Kim, Younkwan Lee +2
May 26, 2026cs.LG

RAPNet: Accelerating Algebraic Multigrid with Learned Sparse Corrections

The scalable solution of large sparse linear systems is a bottleneck in scientific computing and graph analysis. While algebraic multigrid (AMG) offers optimal linear scaling, its performance is severely constrained by the trade-off between the sparsity and convergence quality of coarse-grid operators. Classical AMG heuristics struggle to balance these objectives, often sacrificing stability or performance for sparsity. We propose RAPNet, a graph neural network (GNN) framework that resolves this trade-off by learning to generate sparse, robust coarse operators directly from the sparse algebraic system. Key to our approach is a level-wise training strategy that enables learning from small subgraphs and generalization to million-node domains, bypassing the bottlenecks of prior neural AMG attempts. RAPNet executes exclusively during the solver setup phase, ensuring that the solve phase retains its favorable computational properties. We show that our method outperforms classical non-Galerkin baselines on diverse PDE discretizations and graph Laplacians, making it particularly effective for multi-query tasks such as eigenproblems, time-dependent simulations, and inverse or design problems.
Yali Fink, Ido Ben-Yair, Lars Ruthotto +1
May 25, 2026stat.ML

Learning manifold diffusion semigroups from graph transition matrices

We consider graph diffusion processes constructed from finite i.i.d. samples drawn from an unknown manifold embedded in ambient Euclidean space, where the graph affinity is defined by an ambient Gaussian kernel matrix. We show that the manifold heat semigroup Qt=etΔQ_t = e^{tΔ} can be approximated directly by iterating the graph transition matrix PP, under only low regularity assumptions on the test function ff, including the case fLf \in L^\infty. We bound PnfQtf\| P^n f - Q_t f \| in \infty-norm, with the operator application to ff properly defined, and we recover the classical graph-Laplacian pointwise rate O(N2/(d+6))O(N^{-2/(d+6)}) up to logarithmic factors, for diffusion times tt up to O(1)O(1) and longer. The rate holds for in-sample error as well as out-of-sample generalization, where the estimator of QtfQ_t f at a new point is defined via kernel convolution. To handle non-uniform sampling densities on the manifold, we introduce a right-normalization of the graph transition matrix; under the assumption that the sampling density pp is C3C^3 and bounded away from zero, the same convergence rates hold. We numerically demonstrate the performance of the proposed estimator on simulated data.
Xiuyuan Cheng, Nan Wu
May 23, 2026cs.LG

WLNO: Wavelet-Laplace Neural Operator for Solving Partial Differential Equations

This work introduces the Wavelet-Laplace Neural Operator (WLNO), a novel neural operator that fuses Haar wavelet multi-scale spatial decomposition with the Laplace-domain pole-residue formulation of the Laplace Neural Operator (LNO). While LNO captures transient and steady-state dynamics through learnable system poles and residues, it lacks an explicit mechanism for extracting spatially localized multi-scale features inherent in complex PDE solutions. WLNO addresses this by augmenting the LNO core with a parallel single-level Haar discrete wavelet transform (DWT) branch that decomposes the lifted feature map into four frequency subbands: approximation (LL), horizontal detail (LH), vertical detail (HL), and diagonal detail (HH) and applies independent learned 1×11\times1 convolutions to each subband before reconstruction via the inverse DWT. The two branches are fused through a learnable sigmoid-gated weight αwavα_\mathrm{wav}, initialized to give a small initial contribution to the wavelet branch, allowing the model to adaptively balance Laplace-domain dynamics against spatial multi-scale features throughout training. WLNO is evaluated against LNO on five benchmark PDE problems using identical hyperparameters, training data, and evaluation protocols: the diffusion equation, the Burgers equation, the reaction-diffusion system, Darcy flow, and the two-dimensional Navier-Stokes equation. WLNO consistently outperforms LNO on all five problems, with the most pronounced improvement on problems with strong spatial multi-scale structure, such as the Burgers equation with sharp shock fronts and the Navier-Stokes equation with coherent vortical structures, while remaining consistent across smoother and elliptic problems. These results demonstrate that wavelet-based multi-scale spatial decomposition is a principled and effective complement to Laplace-domain operator learning.
Muhammad Abid, Arth Sojitra, Omer San
May 23, 2026cs.LG

Learning Laplacian Eigenspace with Mass-Aware Neural Operators on Point Clouds

The eigendecomposition of the Laplace--Beltrami Operator (LBO) is fundamental to geometric analysis, yet computing its low-frequency eigenmodes remains a significant bottleneck due to the high cost of iterative solvers on large-scale data. To amortize this cost, we introduce the Neural Eigenspace Operator (NEO), a feed-forward framework designed to predict the spectrum directly from point clouds. Crucially, NEO circumvents the ill-posed nature of standard eigenvector regression, which suffers from intrinsic sign flips and rotation ambiguities, by learning the stable, invariant low-frequency subspace instead. Specifically, the network predicts a redundant set of basis functions whose span robustly covers the target eigenspace, allowing for the recovery of accurate eigenpairs via a lightweight Rayleigh--Ritz refinement. To handle irregular sampling, we propose a mass-aware neural operator that incorporates per-point area weights into attention-based aggregation, improving robustness to non-uniform densities and enabling zero-shot generalization across resolutions. Our approach achieves near-linear runtime scaling and substantial wall-clock speedups over iterative solvers at comparable accuracy, and exhibits strong zero-shot transfer to high-resolution point clouds. The resulting eigenpairs support standard spectral geometry tasks, while the raw basis functions provide effective point-wise features for downstream learning. Code: https://github.com/Adversarr/NEO.
Zherui Yang, Tao Du, Ligang Liu
May 21, 2026stat.ML

The ASE-LSE Disagreement Landscape: An End-to-End Characterisation of Extremes and Structural Drivers

Two of the most widely used methods for analysing graph data, Adjacency Spectral Embedding and Laplacian Spectral Embedding, often produce different results when applied to the same graph. Yet the structural reasons behind this disagreement remain incompletely understood. This paper provides an end-to-end account of ASE-LSE latent subspace disagreement. We first prove that the two methods produce identical latent subspaces for every embedding dimension whenever the Laplacian is a scalar multiple of the adjacency matrix, and show that this scalar relationship holds if and only if the graph is either regular or bipartite biregular. This anchor result identifies a sufficient condition for perfect agreement that pins down the floor of the disagreement spectrum and supplies the baseline for the perturbation analysis. We then prove that no maximal-disagreement graph or family of graphs exists: the disagreement is always strictly below its theoretical ceiling, and we exhibit a witness family demonstrating that no finite maximum is attainable, so the disagreement landscape has no maximiser. With both endpoints established, we derive a Regularity Departure Bound whose two terms isolate degree heterogeneity and eigengap as the primary structural factors influencing disagreement in the middle regime. Empirical validation across thousands of simulated graphs confirms the mechanisms predicted by the bound: heterogeneity pushes disagreement up, eigengap suppresses it, and their joint ratio emerges as a unified predictor of ASE-LSE disagreement, suggesting when the two embeddings can be treated as interchangeable and when they cannot.
Minh Triet Pham, Ian Gallagher
May 18, 2026cs.SI

Neural Acceleration for Graph Partitioning

Graph Partitioning is a critical problem in numerous scientific and engineering domains including social network analysis, VLSI design, and many more. Spectral methods are known to produce quality partitions while minimizing edge cuts for a wide range of problems. However, the computational cost associated with the calculation of the Fiedler vector, an eigenvector associated with the second smallest eigenvalue of the graph Laplacian, remains a significant bottleneck due to memory issues and computational costs. In this paper, we present an accelerated approach to spectral bisection partitioning by replacing the traditional eigenvalue calculation with a simple artificial neural network model to approximate the Fiedler vector. We demonstrate that our approach achieves partitioning quality comparable to spectral bisection while significantly reducing the computational overhead, making it more scalable and efficient for large-scale problems
Joshua Dennis Booth, Vishvam Patel
May 18, 2026cs.SI

Prism: Structural Symmetry Scanning via Duality-Constrained Laplacian Projection

We introduce \textbf{Prism}, a framework for structural symmetry diagnosis in complex networks. Given a graph Laplacian LL and a duality operator PP (a symmetric involution), Prism computes the \emph{duality defect} δ(L,P)=LPPLF/LFδ(L,P) = \|LP - PL\|_F / \|L\|_F -- a scalar measuring how far the network deviates from structural self-consistency. When PP encodes the network's true symmetry, δδ starts near zero and rises monotonically as structure degrades; an arbitrary PP gives noise. We prove that the optimal LL' satisfying [L,P]=0[L', P] = 0 is given by a closed-form block-diagonal projection, and provide an unsupervised alternating optimization that learns PP from the graph's own Fiedler vector. Experiments on synthetic networks show the true-PP defect is 3.38×3.38\times more sensitive to structural degradation than an index-reversal baseline and more sensitive than modularity. On Zachary's Karate Club with edge noise, Prism achieves 94.5%94.5\% community detection accuracy at 5%5\% noise versus 76.6%76.6\% for the raw Laplacian baseline. Applied to live S&P~500 data (2026-05-17), Prism detects rising structural stress (defect 0.430.730.43 \to 0.73 over 90 days) while surface correlations remain low -- a signal invisible to correlation-based methods. In a historical backtest spanning five major stress events (2011--2020), the duality defect exhibits a consistent pattern: it reaches elevated levels \emph{before} the correlation spike that accompanies each crisis, and sustains high readings during periods of structural fragility that conventional metrics classify as calm. The duality defect is a first-principles structural admissibility condition, requiring no training data and computable in milliseconds.
Jiatong Xie
May 13, 2026cs.LG

Topology-Preserving Neural Operator Learning via Hodge Decomposition

In this paper, we study solution operators of physical field equations on geometric meshes from a function-space perspective. We reveal that Hodge orthogonality fundamentally resolves spectral interference by isolating unlearnable topological degrees of freedom from learnable geometric dynamics, enabling an additive approximation confined to structure-preserving subspaces. Building on Hodge theory and operator splitting, we derive a principled operator-level decomposition. The result is a Hybrid Eulerian-Lagrangian architecture with an algebraic-level inductive bias we call Hodge Spectral Duality (HSD). In our framework, we use discrete differential forms to capture topology-dominated components and an orthogonal auxiliary ambient space to represent complex local dynamics. Our method achieves superior accuracy and efficiency on geometric graphs with enhanced fidelity to physical invariants. Our code is available at https://github.com/ContinuumCoder/Hodge-Spectral-Duality
Dongzhe Zheng, Tao Zhong, Christine Allen-Blanchette
May 12, 2026cs.LG

Approximation of Maximally Monotone Operators : A Graph Convergence Perspective

Operator learning has been highly successful for continuous mappings between infinite-dimensional spaces, such as PDE solution operators. However, many operators of interest-including differential operators-are discontinuous or set-valued, and lie outside classical approximation frameworks. We propose a paradigm shift by formulating approximation via graph convergence (Painlevé-Kuratowski convergence), which is well-suited for closed operators. We show that uniform and LpL^p approximation are fundamentally inadequate in this setting. Focusing on maximally monotone operators, we prove that any such operator can be approximated in the sense of local graph convergence by continuous encoder-decoder architectures, and further construct structure-preserving approximations that retain maximal monotonicity via resolvent-based parameterizations.
Takashi Furuya, Yury Korolev, Takaharu Yaguchi
May 12, 2026cs.LG

Approximation Theory of Laplacian-Based Neural Operators for Reaction-Diffusion System

Neural operators provide a framework for learning solution operators of partial differential equations (PDEs), enabling efficient surrogate modeling for complex systems. While universal approximation results are now well understood, approximation analysis specific to nonlinear reaction-diffusion systems remains limited. In this paper, we study neural operators applied to the solution mapping from initial conditions to time-dependent solutions of a generalized Gierer-Meinhardt reaction-diffusion system, a prototypical model of nonlinear pattern formation. Our main results establish explicit approximation error bounds in terms of network depth, width, and spectral rank by exploiting the Laplacian spectral representation of the Green's function underlying the PDE. We show that the required parameter complexity grows at most polynomially with respect to the target accuracy, demonstrating that Laplacian eigenfunction-based neural operator architectures alleviate the curse of parametric complexity encountered in generic operator learning. Numerical experiments on the Gierer-Meinhardt system support the theoretical findings.
Takashi Furuya, Ryo Ozawa, Jenn-Nan Wang
May 11, 2026eess.SY

Multi-Agent System Identification with Nonlinear Sheaf Diffusion

Local interaction laws governing multi-agent systems can be difficult to recover from trajectory data, even when the dynamics are observed faithfully. In systems governed by a nonlinear sheaf Laplacian -- a generalization of the graph Laplacian accommodating heterogeneous state spaces and asymmetric communication channels -- the coordination law is encoded by edge potential functions whose gradients produce the inter-agent forces. Because trajectory observations record node-state evolution, they expose only the aggregate effect of the edge forces at each node: distinct interaction laws that agree at the node level are indistinguishable from trajectory data alone. We show that the fundamental obstruction to recovery is topological, measured by sheaf cohomology, and that unique recovery from an unconstrained function class is possible if and only if this cohomology vanishes. When the obstruction is nontrivial, we show that recovery within a finite-dimensional parameterized class is possible precisely when a data-dependent information matrix is positive definite. Experiments validate the theory and illustrate that accurate trajectory reproduction need not certify recovery of the underlying interaction law.
Nivar Anwer, Hans Riess, Matthew Hale
May 11, 2026cs.LG

Oversmoothing as Representation Degeneracy in Neural Sheaf Diffusion

Neural Sheaf Diffusion (NSD) generalizes diffusion-based Graph Neural Networks by replacing scalar graph Laplacians with sheaf Laplacians whose learned restriction maps define a task-adapted geometry. While the diffusion limit of NSD is known to be the space of global sections, the representation-theoretic structure of this harmonic space remains largely implicit. We develop a quiver-theoretic interpretation of NSD by identifying cellular sheaves on graphs with representations of the associated incidence quiver. Under this correspondence, learned sheaf geometries become points in a finite-dimensional representation space. We show that direct-sum decompositions of the underlying incidence-quiver representation induce decompositions of the harmonic space reached in the diffusion limit. This gives an algebraic interpretation of oversmoothing as representation degeneration: learned sheaves may collapse toward low-complexity summands whose global sections fail to preserve discriminative information. Building on this viewpoint, we connect sheaf diffusion to stability and moment-map principles from Geometric Invariant Theory. We introduce moment-map-inspired regularizers that bias restriction maps toward balanced representation geometries, and identify a structural obstruction in equal-stalk architectures: when dv=ded_v = d_e, admissibility for learnable stability parameters forces the trivial all-object summand onto a stability wall. Non-uniform stalk dimensions remove this obstruction, making adaptive stability meaningful. Experiments on heterophilic benchmarks are consistent with this mechanism: breaking stalk symmetry can reduce variance or improve validation behavior, and adaptive stability becomes more effective in selected rectangular settings. Overall, our framework reframes oversmoothing as a degeneration phenomenon in the representation geometry underlying learned sheaf diffusion.
Arif Dönmez, Axel Mosig, Ellen Fritsche +1
May 9, 2026stat.ML

Optimality of Sub-network Laplace Approximations: New Results and Methods

Although the Laplace approximation offers a simple route to uncertainty quantification in deep neural networks, its reliance on inverting large Hessian matrices has motivated a range of computationally feasible low-dimensional or sparse approximations. A prominent class of such methods - sub-network Laplace approximations, constructs surrogates by restricting attention to a small subset of parameters. Existing approaches in this family typically rely on diagonal, layer-wise, or other architectural heuristics for subset selection, which ignore cross-parameter interactions and lack formal optimality guarantees. In this paper, we provide a rigorous theoretical analysis of the sub-network Laplace paradigm. We prove that all sub-network Laplace methods systematically underestimate the predictive variance of the full Laplace posterior, and that this bias decreases monotonically as the retained sub-matrix expands. Leveraging this insight, we propose two principled, analytically grounded sub-network Hessian approximations: \textit{Gradient-Laplace} selects parameters with the largest average squared gradients of the model output with respect to the parameters over a reference dataset; while \textit{Greedy-Laplace} iteratively refines this selection by accounting for off-diagonal interactions in the precision matrix. We establish theoretical guarantees characterizing their optimality properties and show that Gradient-Laplace provably outperforms existing heuristic approaches. Extensive numerical studies across diverse settings indicate that these methods perform strongly relative to existing benchmarks.
Swarnali Raha, Kshitij Khare, Rohit K Patra
May 7, 2026cs.LG

Consistent Geometric Deep Learning via Hilbert Bundles and Cellular Sheaves

Modern deep learning architectures increasingly contend with sophisticated signals that are natively infinite-dimensional, such as time series, probability distributions, or operators, and are defined over irregular domains. Yet, a unified learning theory for these settings has been lacking. To start addressing this gap, we introduce a novel convolutional learning framework for possibly infinite-dimensional signals supported on a manifold. Namely, we use the connection Laplacian associated with a Hilbert bundle as a convolutional operator, and we derive filters and neural networks, dubbed as \textit{HilbNets}. We make HilbNets and, more generally, the convolution operation, implementable via a two-stage sampling procedure. First, we show that sampling the manifold induces a Hilbert Cellular Sheaf, a generalized graph structure with Hilbert feature spaces and edge-wise coupling rules, and we prove that its sheaf Laplacian converges in probability to the underlying connection Laplacian as the sampling density increases. Notably, this result is a generalization to the infinite-dimensional bundle setting of the Belkin & Niyogi \cite{BELKIN20081289} convergence result for the graph Laplacian to the manifold Laplacian, a theoretical cornerstone of geometric learning methods. Second, we discretize the signals and prove that the discretized (implementable) HilbNets converge to the underlying continuous architectures and are transferable across different samplings of the same bundle, providing consistency for learning. Finally, we validate our framework on synthetic and real-world tasks. Overall, our results broaden the scope of geometric learning as a whole by lifting classical Laplacian-based frameworks to settings where the signal at each point lives in its own Hilbert space.
Kartik Tandon, Julian Gould, Tanishq Bhatia +3
May 7, 2026stat.ML

Gaussian mixture models in Hilbert spaces via kernel methods

Modern datasets across many disciplines increasingly consist of time-evolving, potentially infinite-dimensional random objects, such as dynamic functional data, which are naturally modeled in Hilbert spaces. In these settings, characterizing probability measures, for example, through densities, can be ill-defined or technically challenging. Motivated by clustering applications, we propose a Gaussian mixture framework for Hilbert-space-valued data based on kernel mean embeddings and develop efficient optimization algorithms for estimation. We establish theoretical guarantees showing that the proposed algorithm is well defined and that the model yields a dense class of approximations in infinite-dimensional spaces. We evaluate the framework through extensive experiments on diverse structures and data geometries, including L2L^2-functional data and random graphs in Laplacian spaces arising in modern medical applications.
Daniel López-Montero, Antonio Álvarez-López, Marcos Matabuena
Apr 28, 2026eess.SP

Sparse Graph Learning from Sparse Data via Fiedler Number Maximization

We aim to learn a sparse and connected graph from sparse data, where the number of observations K can be substantially smaller than the signal dimension N for signals x in R^N, and the underlying distribution is unknown. In this severely ill-posed setting, we incorporate Fiedler number (the second eigenvalue of the graph Laplacian matrix that quantifies connectedness) as a robust regularization term in the sparse graph learning objective. We first develop a greedy algorithm that iteratively selects one edge globally for weakening/removal to reduce the objective, leveraging eigenvalue perturbation theorems that bound the adverse effect of an edge change to the Fiedler number. Next, we design a parallel variant, based on the Cheeger's inequality, that recursively partitions an input graph into two sub-graphs using an approximate Cheeger cut to distributedly find an optimal edge. Simulation experiments show that Fiedler number maximization robustifies sparse graph estimates, outperforming previous sparse graph learning algorithms.
Bahar Oveisgharan, Gene Cheung, Andrew Eckford
Apr 27, 2026eess.IV

Shared-kernel Wavelet Neural Networks for Poisson Image Reconstruction

The Laplacian operator transforms the image into its Laplacian field, which usually is sparse and satisfies a stable distribution. On the other hand, an image can be uniquely reconstructed from its Laplacian field via solving a Poisson equation with a proper boundary condition. Such uniqueness is mathematically guaranteed. Thanks to these properties, we propose to use the sparse Laplacian field to present the image. We first show that the Laplacian field is sparse and satisfies a stable distribution on hundreds images. Then, we show that the image can be accurately reconstruct from its Laplacian field. For the reconstruction task, we propose a shared-kernel wavelet neural network, which solves the Poisson equation and has three advantages. First, it has less than {\bf 0.0002M} parameters, which is compact enough for most of devices. Second, it has linear computation complexity, leading to a real-time reconstruction. Third, it achieves higher accuracy than previous methods. Several numerical experiments are conducted to show the effectiveness and efficiency of the sparse Laplacian field and the proposed Poisson solver. The proposed method can be applied in a large range of applications such as image compression, low light enhancement, object tracking, etc.
Yuanhao Gong, Tan Tang, Qianyan Liu
Apr 22, 2026cs.LG

Improved large-scale graph learning through ridge spectral sparsification

Graph-based techniques and spectral graph theory have enriched the field of machine learning with a variety of critical advances. A central object in the analysis is the graph Laplacian L, which encodes the structure of the graph. We consider the problem of learning over this Laplacian in a distributed streaming setting, where new edges of the graph are observed in real time by a network of workers. In this setting, it is hard to learn quickly or approximately while keeping a distributed representation of L. To address this challenge, we present a novel algorithm, GSQUEAK, which efficiently sparsifies the Laplacian by maintaining a small subset of effective resistances. We show that our algorithm produces sparsifiers with strong spectral approximation guarantees, all while processing edges in a single pass and in a distributed fashion.
Daniele Calandriello, Ioannis Koutis, Alessandro Lazaric +1
Apr 21, 2026cs.LG

S2MAM: Semi-supervised Meta Additive Model for Robust Estimation and Variable Selection

Semi-supervised learning with manifold regularization is a classical framework for jointly learning from both labeled and unlabeled data, where the key requirement is that the support of the unknown marginal distribution has the geometric structure of a Riemannian manifold. Typically, the Laplace-Beltrami operator-based manifold regularization can be approximated empirically by the Laplacian regularization associated with the entire training data and its corresponding graph Laplacian matrix. However, the graph Laplacian matrix depends heavily on the prespecified similarity metric and may lead to inappropriate penalties when dealing with redundant or noisy input variables. To address the above issues, this paper proposes a new Semi-Supervised Meta Additive Model (S2^2MAM) based on a bilevel optimization scheme that automatically identifies informative variables, updates the similarity matrix, and simultaneously achieves interpretable predictions. Theoretical guarantees are provided for S2^2MAM, including the computing convergence and the statistical generalization bound. Experimental assessments across 4 synthetic and 12 real-world datasets, with varying levels and categories of corruption, validate the robustness and interpretability of the proposed approach.
Xuelin Zhang, Hong Chen, Yingjie Wang +2
Apr 16, 2026cs.LG

Beyond the Laplacian: Doubly Stochastic Matrices for Graph Neural Networks

Graph Neural Networks (GNNs) conventionally rely on standard Laplacian or adjacency matrices for structural message passing. In this work, we substitute the traditional Laplacian with a Doubly Stochastic graph Matrix (DSM), derived from the inverse of the modified Laplacian, to naturally encode continuous multi-hop proximity and strict local centrality. To overcome the intractable O(n3)O(n^3) complexity of exact matrix inversion, we first utilize a truncated Neumann series to scalably approximate the DSM, which serves as the foundation for our proposed DsmNet. Furthermore, because algebraic truncation inherently causes probability mass leakage, we introduce DsmNet-compensate. This variant features a mathematically rigorous Residual Mass Compensation mechanism that analytically re-injects the truncated tail mass into self-loops, strictly restoring row-stochasticity and structural dominance. Extensive theoretical and empirical analyses demonstrate that our decoupled architectures operate efficiently in O(KE)O(K|E|) time and effectively mitigate over-smoothing by bounding Dirichlet energy decay, providing robust empirical validation on homophilic benchmarks. Finally, we establish the theoretical boundaries of the DSM on heterophilic topologies and demonstrate its versatility as a continuous structural encoding for Graph Transformers.
Zhaobo Hu, Vincent Gauthier, Mehdi Naima
Mar 26, 2026cs.CV

Fast Preemptive Robustification: High-Frequency Response Anti-Aligns Shared Vulnerability

Adversarial attacks can readily compromise deep neural networks (DNNs). In particular, transferable attacks (TAs) exploit the shared vulnerabilities among DNNs, enabling perturbations crafted on surrogates to transfer to unseen models. Training-time and post-attack defenses have been extensively studied for combating TAs. Orthogonal to these approaches, preemptive robustification (PR) has emerged as a pre-attack defense that enhances the robustness of benign samples by superimposing protective variations before attacks. Despite its promise, PR remains underexplored and faces several important limitations. First, dependence on well-trained surrogate classifiers limits applicability, as surrogates are task-specific and may even be unavailable in some practical settings. Second, the required iterative optimization or dedicated PR generator training incurs substantial costs. Third, the generated variations are opaque to humans. To address these, we seek an efficient PR that is surrogate-free, optimization-free, training-free, and human-interpretable. Intriguingly, we discover a numerical correlation between the shared vulnerabilities of DNNs and Laplacian responses, with their cosine similarity being significantly negative. This indicates that negated high-frequency response constitutes an important component of shared vulnerabilities. Consequently, strengthening Laplacian responses counteracts this component, improving resistance to TAs. Building upon this insight, we propose Fast Preemptive Robustification (FPR), which performs Laplacian sharpening via a single channel-wise convolution with a 3\times3 kernel. FPR is simple yet effective, as demonstrated by extensive experiments. Specifically, FPR reduces the attack success rate (ASR) of untargeted TAs by 12.7% and that of targeted TAs from 10.7% to 4.1%. Code will be released publicly.
Jiaming Liang, Chi-Man Pun
Feb 12, 2026eess.SY

Grounded Laplacians of Directed Signed Matrix-Weighted Networks: Spectral Properties and Applications to Non-Trivial Consensus

Grounded Laplacians provide the spectral link between external information and network convergence. This paper establishes positive-stability results for grounded Laplacians in directed signed matrix-weighted networks, where directionality, antagonism, and singular edge weight matrices coexist. First, under in-degree dominance and positive-negative reachability, we derive explicit local thresholds for the grounding gains. Second, a scaled, kernel-based certificate replaces the unscaled degree condition with a signed matrix-weighted Dirichlet decomposition and a joint-kernel test for the scaled symmetric part. The computable margin γpγ_p lower-bounds the minimum real part of the spectrum and certifies exponential contraction in the PP-norm. Under absolute generalized balance, the kernel-intersection test is given; the balanced and definite-edge unbalanced undirected cases follow. As an application, non-trivial consensus (NTC) on signed matrix-weighted networks is studied. Informed agents, external signals and coupling terms are designed to steer all agents to any prescribed nonzero state without requiring structural balance. Switching topology case retains non-trivial consensus result under certain conditions. Realizing NTC on signed matrix-weighted networks demonstrates that groups with both cooperative and antagonistic multi-dimensional interactions can achieve consensus, which was previously deemed exclusive to fully cooperative groups.
Tianmu Niu, Bing Mao, Hao Liao +2
Nov 7, 2025cs.CV

SurgiATM: A Physics-Guided Plug-and-Play Model for Deep Learning-Based Smoke Removal in Laparoscopic Surgery

During laparoscopic surgery, smoke generated by tissue cauterization can significantly degrade the visual quality of endoscopic frames, increasing the risk of surgical errors and hindering both clinical decision-making and computer-assisted visual analysis. Consequently, removing surgical smoke is critical to ensuring patient safety and maintaining operative efficiency. In this study, we propose the Surgical Atmospheric Model (SurgiATM) for surgical smoke removal. SurgiATM statistically bridges a physics-based atmospheric model and data-driven deep learning models, combining the superior generalizability of the former with the high accuracy of the latter. Furthermore, SurgiATM is designed as a lightweight module that can be easily integrated into existing surgical desmoking architectures with minimal modification, aiming to enhance their accuracy and stability. The proposed method is derived via statistically optimizing a Mixture-of-Experts (MoE) model at the output end of arbitrary deep learning methods, with a Laplacian-like error distribution specifically leveraged to model surgical smoke. The output-stage MoE ensures minimal modification to the architecture of the original methods, while the Laplacian-like distribution characteristic of surgical smoke enables a lightweight reconstruction formulation with minimal parameters. Therefore, SurgiATM introduces only two hyperparameters and no additional trainable weights, preserving the original network architecture with minimal computational and modification overhead. We conduct extensive experiments on three public surgical datasets with ten desmoking methods, involving multiple network architectures and covering diverse procedures, including cholecystectomy, partial nephrectomy, and diaphragm dissection.
Mingyu Sheng, Jianan Fan, Dongnan Liu +3
Sep 26, 2025cs.LG

Rotary Position Encodings for Graphs

We study the extent to which rotary position encodings (RoPE), a recent transformer position encoding algorithm broadly adopted in large language models (LLMs) and vision transformers (ViTs), can be applied to graph-structured data. We find that rotating tokens depending on the spectrum of the graph Laplacian efficiently injects structural information into the attention mechanism, boosting performance in synthetic and real-world graph learning tasks. This approach, coined Wave-Induced Rotary Encodings (WIRE), enjoys intriguing theoretical properties: it recovers regular RoPE on grids, and depends asymptotically on the graph effective resistance. Unlike bias-based relative position encodings, WIRE is compatible with linear attention.
Isaac Reid, Arijit Sehanobish, Cederik Höfs +7
Jun 2, 2025cs.LG

Efficient Learning of Balanced Signed Graphs via Sparse Linear Programming

Signed graphs are equipped with both positive and negative edge weights, encoding pairwise correlations as well as anti-correlations in data. A balanced signed graph is a signed graph with no cycles containing an odd number of negative edges. Laplacian of a balanced signed graph has eigenvectors that map via a simple linear transform to ones in a corresponding positive graph Laplacian, thus enabling reuse of spectral filtering tools designed for positive graphs. We propose an efficient computation method to learn a balanced signed graph Laplacian directly from data. Specifically, extending a previous linear programming (LP) based sparse inverse covariance estimation method called CLIME, we formulate a new LP problem for each Laplacian column ii, where the linear constraints restrict weight signs of edges stemming from node ii, so that nodes of same / different polarities are connected by positive / negative edges. We derive a feasible CLIME parameter ρiρ_i for each sign-constrained column problem. We solve the LP problem efficiently by tailoring a sparse LP method based on ADMM. We theoretically prove that the row / column updates produce a non-increasing objective sequence, and show that the iterations are terminated in a finite number of steps. Extensive experimental results on synthetic and real-world datasets show that our balanced graph learning method outperforms competing methods and enables reuse of spectral filters, wavelets, and graph neural nets (GNN) constructed for positive graphs.
Haruki Yokota, Hiroshi Higashi, Yuichi Tanaka +1
May 7, 2025cs.LG

Riemannian Denoising Diffusion Probabilistic Models

We propose Riemannian Denoising Diffusion Probabilistic Models (RDDPMs) for learning distributions on submanifolds of Euclidean space that are level sets of functions, including most of the manifolds relevant to applications. Existing methods for generative modeling on manifolds rely on substantial geometric information such as geodesic curves or eigenfunctions of the Laplace-Beltrami operator and, as a result, they are limited to manifolds where such information is available. In contrast, our method, built on a projection scheme, can be applied to more general manifolds, as it only requires being able to evaluate the value and the first order derivatives of the function that defines the submanifold. We provide a theoretical analysis of our method in the continuous-time limit, which elucidates the connection between our RDDPMs and score-based generative models on manifolds. The capability of our method is demonstrated on datasets from previous studies and on new datasets sampled from two high-dimensional manifolds, i.e. SO(10)\mathrm{SO}(10) and the configuration space of molecular system alanine dipeptide with fixed dihedral angle.
Zichen Liu, Wei Zhang, Christof Schütte +1