Graph Retrieval-Augmented Generation

Retrieval-augmented generation (RAG) for document-based Open-domain Question Answering (ODQA) on large-scale industrial corpora faces two critical bottlenecks: routing failure in locating the correct document and evidence fragmentation in integrating scattered information. Existing approaches relying on flat text chunks or page-level images inherently struggle to (i) precisely pinpoint the target document among thousands of candidates and (ii) organically connect multimodal evidence, such as tables and figures, within a limited token budget. To address these challenges, we propose HiKEY, a hierarchical tree-based multimodal retrieval framework that elevates document hierarchy to a first-class retrieval signal. Instead of simple chunking, HiKEY reconstructs a logical heterogeneous graph via Document Hierarchical Parsing (DHP), explicitly encoding parent-child relationships. Adopting a hierarchical coarse-to-fine strategy, the framework (1) performs global routing to rapidly prune the search space using hierarchical indexing, and (2) conducts fine-grained retrieval to rank sections by employing a multimodal fusion strategy that captures the most discriminative evidence. Finally, HiKEY assembles a token-efficient evidence subgraph via a hybrid structural-semantic packing strategy. Experiments on ODQA benchmarks demonstrate that HiKEY significantly outperforms page- and chunk-based baselines, improving retrieval recall by up to 12.9% and end-to-end QA performance by up to 6.8%.

Multi-modal Retrieval-Augmented Generation (MMRAG) has emerged as a powerful paradigm for enhancing Multimodal Large Language Models in knowledge-intensive question answering by integrating external visual, textual, and structural knowledge. However, existing MMRAG frameworks suffer from critical limitations, including noisy and irrelevant retrieval, cross-modal semantic misalignment, lack of adaptive reasoning, and incoherent generation across local and global contexts. We introduce \textbf{CogniVerse}, a novel MMRAG framework that addresses these challenges through a cognitive-inspired, mathematically rigorous approach. Drawing from human-like reasoning, CogniVerse integrates three synergistic components: (1) a Cognitive Reflection Module that dynamically assesses retrieval necessity and filters relevant multi-modal content, reducing noise and computational overhead; (2) a Multi-modal Retrieval Module that aligns embeddings in a Riemannian manifold using information geometry and refines knowledge graphs via spectral graph theory, ensuring precise and coherent retrieval; and (3) a Hierarchical Generation Module that employs an optimal transport-based loss to balance token-level accuracy and global semantic coherence. Extensive experiments demonstrate that CogniVerse significantly outperforms state-of-the-art systems in both accuracy and coherence, while reducing retrieval latency.

Retrieval-Augmented Generation (RAG) enhances LLMs by grounding generation in query-relevant external evidence. Beyond unstructured text corpora, Graph RAG integrates knowledge graphs into the retrieval pipeline, enabling LLMs to access entities, relations, and multi-hop dependencies encoded in structured knowledge. However, the same structured knowledge that empowers Graph RAG also creates a new privacy attack surface. We demonstrate that Graph RAG systems can be turned into structural oracles: through adaptive black-box interactions, an adversary can elicit sufficient relational evidence to reconstruct substantial portions of the hidden knowledge graph. We propose a structure-oriented reconstruction framework that recovers targeted graphs from both local and global perspectives. Specifically, Depth-Wise Heuristic Search extracts fine-grained node attributes by recursively expanding entity-centered evidence, while Breadth-Wise Diffusion Search infers graph topology by propagating across relation-induced neighborhoods. Experiments on generic and healthcare scenarios demonstrate that our method can recover over 90% of the original knowledge graph from representative Graph RAG systems, revealing sensitive entities, relations, and structural dependencies with high fidelity. Existing guradrails provide limited defense against our attack, highlighting the inherent difficulty of safeguarding structural privacy in Graph RAG pipelines.

Graph-based Retrieval-Augmented Generation (GraphRAG) advances flat document retrieval by structuring knowledge as relational graphs, enabling more coherent and effective reasoning. However, applying it to specific domains like legal reasoning faces critical challenges. (i) Legal corpora are heterogeneous, containing multi-granular knowledge from cases, articles and interpretations. A flat knowledge graph cannot adequately differentiate between factual details, applied rules, and abstract principles, limiting accurate retrieval. (ii) Reliable legal judgment demands transparent, evidence-based reasoning. Traditional RAG passes retrieved context directly to an LLM without verification, resulting in opaque, error-prone reasoning. To this end, we propose LegalGraphRAG, a framework designed for reliable legal reasoning. Our approach introduces two core components: a hierarchical legal graph that hierarchically organizes legal sources to enable retrieval at appropriate abstraction levels, and a multi-agent system for reliable legal reasoning, where a Researcher retrieves candidate evidence, an Auditor rigorously verifies its validity against source documents, and an Adjudicator synthesizes the set of verified evidence to render a final judgment. Extensive experiments show that LegalGraphRAG achieves the state-of-the-art performance, outperforming existing GraphRAG baselines in accurate and trustworthy legal analysis. Our code, datasets and implementation details are available at https://github.com/XMUDeepLIT/LegalGraphRAG.

GraphRAG extends retrieval-augmented generation by organizing corpora as explicit knowledge graphs, enabling graph-based retrieval for complex question answering. However, existing frameworks extract entities and relations within individual chunks, leaving cross-chunk relations -- those whose evidence spans multiple passages -- systematically absent from the index. Exhaustive LLM-based recovery of such relations is impractical due to the combinatorial explosion of chunk combinations. We present CrossAug, a GNN-guided CROSS-Chunk Graph AUGmentation method that enriches GraphRAG indices with cross-chunk relational structure as an offline step before query-time retrieval. CrossAug derives training supervision through self-supervised graph corruption, uses a topology-aware GNN to score subgraphs for missingness, and applies evidence-grounded LLM completion only to selected high-scoring regions. Experiments on three LLM-based GraphRAG frameworks across four multi-hop and long-document QA benchmarks demonstrate that CrossAug consistently improves performance, confirming the benefit of cross-chunk graph augmentation for retrieval-based question answering. Our code is available at https://github.com/DonFinliani/CrossAug.

Retrieval-Augmented Generation (RAG) systems for question answering typically retrieve evidence by semantic similarity between the query and document chunks. While effective for unstructured text, this approach is less reliable on semi-structured corpora where answering may require exact filtering, aggregation, or exhaustive retrieval over structured attributes across multiple documents. Symbolic approaches support such operations, but they are often brittle on noisy natural-language corpora. We address this gap with DualGraph, a RAG framework that represents documents through two complementary views: a Textual Knowledge Graph for semantic retrieval and a Symbolic Knowledge Graph for symbolic querying over typed subject--predicate--object triples. Building on these two components, we provide multiple strategies for selecting or combining semantic and symbolic evidence.We also introduce SpecsQA, a benchmark from a commercial shopping website with semi-structured product documents and manually curated questions spanning open-ended and specification-oriented retrieval. Experiments show that DualGraph consistently outperforms state-of-the-art dense-retrieval, GraphRAG, symbolic, and table-oriented baselines across question types.Code and data are available at https://github.com/corneliocristina/DualGraphRAG.

Key knowledge for steel-industry volatile organic compounds (VOCs) governance is scattered across unstructured scientific literature, making it difficult to integrate process, pollutant, and control-technology evidence and increasing the risk of hallucination when general large language models (LLMs) answer low-frequency industrial questions. Here we developed Chat-ISV, a knowledge graph (KG) enhanced multi-agent Q&A system that parses a curated steel-industry VOCs literature corpus, constructs a Neo4j KG with 27180 nodes and 81779 semantic edges, and combines prompt-constrained extraction, chunk-centered topology optimization, multi-agent routing, source-backtracking retrieval, local literature retrieval, open-domain knowledge access, and interactive subgraph visualization. Benchmark tests and 400 expert blind evaluations showed that topology optimization reduced isolated nodes from 57% to 4.08% and that Chat-ISV achieved high factual reliability, with 96.93% precision, 72.63% recall, an F1-score of 0.830, and a mean score of 1.69/2.00. By converting fragmented environmental-engineering literature into traceable, queryable, and decision-support-oriented knowledge, Chat-ISV establishes a scalable environmental-informatics paradigm for reliable LLM deployment and intelligent pollution-control decision support in specialized industrial domains.

Retrieval-augmented generation (RAG) has become the standard way to ground large language models in external knowledge, but many systems still organize evidence as flat chunks and retrieve it through largely unstructured search. This weak structure becomes a bottleneck for complex retrieval: the system must decide where to search, how to move from coarse topics to entity-relation evidence, which evidence has been verified, and which intermediate artifacts can be reused. We define these intermediate variables as a retrieval state and study RAG as structured state management. EfficientGraph-RAG makes this state explicit through three coupled mechanisms: TAM defines a typed hierarchical state space over evidence, MARS updates and verifies the state through role-specialized agents, and SMP stores reusable state under hierarchy-aware access control. Using one shared framework configuration, EfficientGraph-RAG ranks first on the reported answer-quality metrics averaged over the three evaluated LongBench retrieval-style subsets, matches the strongest agentic baseline on HotpotQA EM while reducing large-model token usage by $3.51\times$, and provides a low-token DocVQA result among retrieval-organizing cross-modal methods. Component analysis shows role-specific mechanisms: MARS is the main answer-quality driver, TAM supplies the typed traversal state and Adaptive Routing signal, and SMP enables corpus-dependent reuse, with cross-query cache hit rates ranging from 3.77% to 23.18%.

Biomedical knowledge graphs (KGs) treat disease associations as static facts, but temporal information is crucial for clinical reasoning, e.g., a symptom diagnostic of one disease at age 3 may imply a different disease at age 13. Existing KGs such as PrimeKG, Hetionet, and iKraph do not encode when a finding becomes clinically relevant over the course of a disease. This limits their usefulness for longitudinal clinical reasoning and retrieval augmentation. We introduce ChronoMedKG, a temporal biomedical knowledge graph that contains 460,497 evidence-linked triples (filtered from 13M raw extractions) covering 13,431 diseases. Each association is tied to temporal components like onset window or progression stage, which are backed by PMID-traceable evidence and a multi-signal credibility score. The graph is constructed through a disease-autonomous multi-agent pipeline in which multiple frontier LLMs independently extract knowledge from PubMed and PMC literature. Only those relations are kept that are supported by multi-model consensus, survive credibility filtering, as well as ontology alignment. ChronoMedKG scored 92.7% agreement against Orphadata and adds temporal grounding for 6,250 diseases absent from HPOA, Orphadata, and Phenopackets, including 1,657 Orphanet-coded rare diseases. We further introduce ChronoTQA, a benchmark of 3,341 questions across eight task types (six temporal plus two static controls), with a 12-question supplementary probe. Frontier LLMs lose roughly 30 points moving from static to temporal questions; ChronoMedKG retrieval rescues 47-65% of their long-tail failures, against 17-29% for HPOA-RAG. As such, ChronoMedKG provides a crucial temporal axis for retrieval-augmented clinical systems that was previously absent.

GraphRAG conditions language models on subgraphs retrieved from knowledge graphs, encoded via message-passing GNNs. Because these encoders entangle node contributions through iterated neighborhood aggregation, there is no closed-form way to determine how much each retrieved entity influenced the encoder's output, and therefore no way to faithfully audit what structural evidence actually reached the model. We introduce Ex-GraphRAG, which replaces the GNN encoder with a Multivariate Graph Neural Additive Network (M-GNAN), an extension of additive graph models to high-dimensional embedding spaces that yields an exact decomposition of the encoder's output across individual nodes and feature groups, without post-hoc approximation. On STaRK-Prime, this auditable encoder matches black-box performance. Using it to audit evidence routing, we uncover a semantic-structural mismatch: the nodes that dominate the encoder's output are structurally disconnected in the retrieved subgraph, held together by low-attribution intermediaries whose removal degrades multi-hop QA by up to 28%. This mismatch, invisible to any opaque encoder, reveals that semantic importance and structural connectivity are governed by disjoint sets of nodes, with direct implications for retrieval pruning, context construction, and failure diagnosis in graph-augmented LLMs.

Graph-based Retrieval Augmented Generation (GraphRAG) extends retrieval-augmented generation to support structured reasoning over complex corpora, but its reliability under resource-constrained, privacy-sensitive deployments remains unclear. In healthcare, where Electronic Health Record (EHR) data is complex and strictly regulated, reliance on cloud-based large language models (LLMs) introduces challenges in cost, latency, and compliance. In this work, we present a systematic evaluation of GraphRAG for EHR schema retrieval using locally deployed open-source LLMs. We implement the Microsoft GraphRAG pipeline on real-world EHR schema documentation and benchmark four models, including Llama 3.1 (8B), Mistral (7B), Qwen 2.5 (7B), and Phi-4-mini (3.8B), each deployed via Ollama on a single consumer GPU (8 GB VRAM). We evaluate indexing efficiency, knowledge graph construction, query latency, answer quality, and hallucination under both global and local retrieval modes. Our results reveal substantial differences: Llama 3.1 produces the richest knowledge graph (1,172 entities), Qwen 2.5 achieves the best answer quality (3.3/5), Phi-4-mini fails to complete the pipeline due to structured-output errors, and Mistral exhibits degenerate repetition behavior. We further show that GraphRAG exhibits a practical capacity threshold, where models below approximately 7B parameters fail to reliably produce valid structured outputs and cannot complete the pipeline. In addition, indexing and answer quality are decoupled across models, and local retrieval consistently outperforms global summarization in both latency and factual grounding, with reduced hallucination. These findings demonstrate that GraphRAG is feasible on consumer hardware while highlighting the importance of model selection and retrieval design for robust deployment in regulated settings.

Retrieval-Augmented Generation (RAG) has become foundational for grounding large language models in domain-specific corpora, yet conventional vector-based RAG systems are fundamentally limited in their ability to capture the structured, multi-entity relationships that underpin financial market analysis. This paper presents a comprehensive comparative study of a novel two-hop Graph-RAG architecture versus a standard vector-only baseline for cross-entity financial sentiment analysis. Our system constructs a sentiment-weighted knowledge graph of 59 equity entities from 255 news articles covering 10 major technology stocks, then augments dense retrieval with intensity-filtered graph traversal over INFLUENCES edges to surface relational evidence inaccessible to vector search alone. We evaluate both architectures on 100 grounded queries (30 Direct, 70 Relational) using semantic similarity, entity recall, RAGAS metrics, latency benchmarks, and ablation studies. Graph-RAG achieves a statistically significant improvement in entity recall (+6.4%, p < 0.001, Wilcoxon signed-rank) and delivers substantially more relevant answers for complex multi-entity queries (+11.7% Answer Relevancy), with gains concentrating in relational question types (+16.1%). Critically, these improvements come at no measurable cost to answer quality (delta = +0.001 semantic similarity, Cohen's d = 0.078), with a modest 22.6% increase in mean latency offset by an 80% reduction in latency variance. An ablation study on the graph traversal intensity threshold reveals an inverted-U relationship with answer quality, identifying tau = 0.5 as optimal over the production default of tau = 0.7. These findings characterize a precision-for-coverage trade-off inherent to graph-augmented retrieval and provide actionable architectural guidance for practitioners building RAG systems for multi-entity financial analysis.

Graph-structured retrieval-augmented generation (RAG) systems can improve answer quality on multi-hop questions, but many current systems rely on large language models (LLMs) to extract entities, relations, and summaries during indexing. These calls add token and wall-clock costs that grow with corpus size. We present ContextRAG, a graph RAG system whose graph topology is constructed without LLM-based entity or relation extraction. ContextRAG derives a fuzzy concept graph over chunk embeddings using residual-quantization k-means and Formal Concept Analysis with Lukasiewicz residuated logic. Bridge-like and meet-derived context nodes are induced by soft fuzzy join and meet operations, rather than by LLM-written graph edges. On a 130-task UltraDomain subset, ContextRAG builds its index with 30 LLM calls and 22,073 tokens. In contrast, a local HiRAG reproduction stress test required 870 indexing calls and 3.54M tokens on a 20-task subset before failing during graph construction; linear extrapolation to 130 tasks implies over 23M indexing tokens. ContextRAG obtains 33.6% F1 overall and 36.8% F1 on multi-hop tasks. An activation analysis shows that queries retrieving at least one lattice-derived node in the top five achieve +3.9 percentage points F1 over queries that do not; this association is diagnostic rather than causal.

Existing LLM-driven knowledge graph (KG) construction methods predominantly employ stateless batch processing pipelines, exhibiting structural deficiencies in cross-chunk semantic relation capture, entity disambiguation, and construction process interpretability. These limitations undermine KG quality, retrieval precision, and deployment trust in high-stakes domains. We propose RAGA (Reading And Graph-building Agent), an LLM-based autonomous KG construction and retrieval fusion framework. RAGA provides an atomic toolset supporting full KG lifecycle CRUD operations and embeds a Read-Search-Verify-Construct cognitive constraint into a ReAct tool loop. A KG-vector synchronization mechanism enables hybrid symbolic-vector retrieval, while evidence-anchored verification links every knowledge entry to its source text for auditable provenance. Preliminary experiments on a subset of the QASPER scientific QA dataset indicate that RAGA's fusion retrieval outperforms zero-shot baselines, with KG integration providing measurable gains in both answer and evidence quality. The framework design and experimental baseline serve as a reference for agent-driven autonomous KG construction.

Agentic retrieval improves multi-hop question answering by giving language models autonomy to iteratively gather evidence. Recent work augments these systems with knowledge graphs for structured traversal, but this combination introduces significant cost: expensive graph construction at index time and compounding token usage at inference time. We introduce Graph Agentic Search over Propositions (GRASP), an agentic system that simultaneously optimizes for high accuracy and minimal token usage in multi-hop question answering. Rather than executing a rigid, singular query, GRASP actively coordinates its retrieval strategy by decomposing multi-hop queries into dependency-aware plans. This enables GRASP to dynamically scale the number of sub-agents according to the complexity of the problem. Each sub-agent resolves its single-hop query by exploring a novel three-layer hierarchical graph of entities, propositions, and passages, using the entity layer for targeted traversal and the proposition layer for high-recall passage retrieval via reciprocal-rank voting. We evaluate GRASP on MuSiQue, 2WikiMultihopQA, and HotpotQA under two settings: open-corpus retrieval and extended context reasoning (LongBench). GRASP achieves the highest QA accuracy in the open retrieval setting on MuSiQue and 2Wiki while using 40-50 percent fewer tokens than IRCoT+HippoRAG2. Furthermore, GRASP leads on EM and F1 across all three datasets in the LongBench setting while using 30 percent fewer tokens than the next most accurate method. Finally, we introduce success economy - the amortized token cost per correct answer, weighted by difficulty - and advocate for efficiency-aware evaluation as a standard practice for agentic QA.

Large Language Models (LLMs) have demonstrated strong capabilities across diverse NLP applications, such as translation, text generation, and question answering. Nevertheless, they remain limited in complex settings that demand deep reasoning and logical inference. Since these models are trained on large-scale text corpora, their generation process may still introduce irrelevant, noisy, or factually inconsistent content. To mitigate this problem, we introduce SGR, a stepwise framework that enhances LLM reasoning through external subgraph generation. SGR builds query-specific subgraphs from external knowledge bases and uses their semantic structure to support multi-step inference. By grounding intermediate reasoning steps in structured external knowledge, the framework helps the model concentrate on relevant entities, relations, and supporting evidence. In particular, SGR first constructs a subgraph tailored to the input question. It then guides the model to reason progressively over the generated structure and combines multiple reasoning trajectories to obtain the final prediction. Experimental results across several benchmark datasets show that SGR achieves consistent improvements over competitive baselines, highlighting its value for improving both reasoning accuracy and factual reliability.

Retrieval-Augmented Generation can improve factuality by grounding answers in external evidence, but Agentic GraphRAG complicates what it means for citations to be faithful. In these systems, an agent explores a knowledge graph before producing an answer and a small set of citations. We frame citation faithfulness as a trajectory-level problem: final citations should not only support the answer, but also account for the graph traversal, structure, and visited-but-uncited entities that may influence it. Through controlled ablation experiments, we compare the effects of isolating, removing, and masking cited and uncited graph entities. Our results show that cited evidence is often necessary, as removing it substantially changes answers and reduces accuracy. However, citations are not sufficient, because accurate answers can also depend on uncited traversal context and surrounding graph structure. These findings suggest that citation evaluation in Agentic GraphRAG should move beyond source support toward provenance over the broader retrieval trajectory.

Legal reasoning is not semantic similarity search. A court judgment encodes constrained symbolic reasoning: precedent propagation, procedural state transitions, and statute-bound inference. These are properties that vector-based retrieval-augmented generation (RAG) cannot faithfully represent. Hallucinated precedents, outdated statute citations, and unsupported reasoning chains remain persistent failure modes in LLM-based legal AI, with real consequences for access to justice in high-caseload jurisdictions such as India. This paper presents Falkor-IRAC, a graph-constrained generation framework for Indian legal AI that grounds generation in structured reasoning over an IRAC (Issue, Rule, Analysis, Conclusion) knowledge graph. Judgments from the Supreme Court and High Courts of India are ingested as IRAC node structures enriched with procedural state transitions, precedent relationships, and statutory references, stored in FalkorDB for low-latency agentic traversal. At inference time, LLM-generated answers are accepted only if a valid supporting path can be traced through the graph, a check performed by a falsifiability oracle called the Verifier Agent. The system also detects doctrinal conflicts as a first-class output rather than silently resolving them. Falkor-IRAC is evaluated using graph-native metrics: citation grounding accuracy, path validity rate, hallucinated precedent rate, and conflict detection rate. These metrics are argued to be more appropriate for legal reasoning evaluation than BLEU and ROUGE. On a proof-of-concept corpus of 51 Supreme Court judgments, the Verifier Agent correctly validated citations on completed queries and correctly rejected fabricated citations. Evaluation against vector-only RAG baselines is left for future work. The companion InIRAC dataset, 500+ structured Indian court judgments with IRAC annotations, is released alongside this paper.

We introduce PersonalAI 2.0 (PAI-2), a novel framework designed to enhance LLM-based systems through integration of external knowledge graphs (KGs). The proposed approach addresses key limitations of existing Graph Retrieval-Augmented Generation (GraphRAG) methods by incorporating a dynamic, multistage query-processing pipeline. The central point of the PAI-2 design is its ability to perform adaptive, iterative information search, guided by extracted entities, matched graph vertices, and generated clue-queries. An evaluation conducted on five benchmarks (Natural Questions, TriviaQA, HotpotQA, 2WikiMultihopQA, and MuSiQue) demonstrates an improvement in the factual correctness of generated answers compared to analogue methods (LightRAG, RAPTOR, HippoRAG 2, and PAI-1). PAI-2 achieves a 9% average gain by LLM-as-a-Judge on the 2WikiMultihopQA and MuSiQue benchmarks, and attains accuracy comparable to HippoRAG 2 on the TriviaQA and HotpotQA benchmarks, reflecting its effectiveness in reducing hallucination rates and increasing precision. We show that enabled search plan enhancement mechanism gain 18% boost compared to disabled one by LLM-as-a-Judge across five benchmarks. In addition, an ablation study reveals that PAI-2 achieves SOTA result on the MINE-1 benchmark, obtaining an 89% information-retention score with LLMs in the 7--15B tiers. Collectively, these findings underscore the potential of PAI-2 to serve as a reusable component for personalized AI applications, which require scalable, context-aware knowledge-representation and reasoning capabilities. The source code of PAI-2 is available at the following link: https://github.com/Dzigen/PersonalAI.

Long-term memory is becoming a central bottleneck for language agents. Exsting RAG and GraphRAG systems largely treat memory graphs as static retrieval middleware, which limits their ability to recover complete evidence chains from partial cues, exploit reusable graph-structrual roles, and improve the memory itself through downstream feedback. We introduce SAGE, a Self-evolving Agentic Graph-memory Engine that models graph memory as a dynamic long-term memory substrate. SAGE couples two roles: a memory writer that incrementally constucts structured graph memory from interaction histories, and a Graph Foundation Model-based memory reader to perform retrieval and provide feedback to the memory writer. We provide rigorooous theoretical annalyses supporting the framework. Across multi-hop QA, open-domain retireval, domain-specific review QA, and long-term agent-memory benchmarks, SAGE improves evidence recovery, answer grounding, and retrieval efficiency: after two self-evolution rounds, it achieves the best average rank on multi-hop QA; in zero-shot open-domain transfer, it reaches 82.5/91.6 Recall@2/5 on NQ. Further results on LongMemEval and HaluMem show that traning and reader-writer feedback improve multiple long-term memory and hallucination-diagnostic metrics, suggesting that self-evolving, structure-aware graph memory is a promising foundation for robust long-horizon language agents.

Knowledge Graph Question Answering (KGQA) aims to answer user questions by reasoning over Knowledge Graphs (KGs). Recent KGQA methods mainly follow the retrieval-augmented generation paradigm to ground Large Language Models~(LLMs) with structured knowledge from KGs. However, training effective models to retrieve question-relevant evidence from KGs typically requires high-quality intermediate supervision signals, such as question-relevant paths or subgraphs, which are time- and resource-intensive to obtain. We propose PathISE, a novel framework for learning high-quality intermediate supervision from answer-level labels. PathISE introduces a lightweight transformer-based estimator that estimates the informativeness of relation paths to construct pseudo path-level supervision. This supervision is then distilled into an LLM path generator, whose generated paths are grounded in the KG to provide compact evidence for inductive answer reasoning. ExtensiveISE experiments on three KGQA benchmarks show that PathISE achieves competitive or state-of-the-art KGQA performance, and provides reusable supervision signals that can enhance existing KGQA models, without relying on costly LLM-refined supervision signals. Our source code is available at https://anonymous.4open.science/r/PathISE-2F87.

Retrieval-Augmented Generation (RAG) systems are widely used in institutional question answering settings where responses must be grounded in authoritative documentation (Gao et al., 2023). In entity-dense domains where relevant information is distributed across heterogeneous documents, vector-only retrieval often produces fragmented evidence and increases dependence on inference-time reasoning (Zhao et al., 2024). This paper introduces GRACE-RAG, a retrieval-governed, graph-augmented RAG architecture that externalizes structural reasoning from the generative stage to a structured retrieval layer, resolving structural ambiguity offline, enabling deployment on self-hosted lightweight models calibrated to closed-domain institutional vocabulary. Experiments across three model capacities: Mistral 24B, GPT OSS 120B, and Gemini 2.5 Flash show consistent improvements in completeness, depth, and anticipatory coverage, with overall quality gains of up to 20% under mid-scale models, indicating that retrieval architecture governs structural quality over model scale, reducing computational and latency footprint without dependence on proprietary systems.

Zero-shot single-cell cell-type annotation aims to determine a cell's type from a given set of expressed genes without any training. Existing knowledge-graph-based RAG approaches retrieve evidence by expanding from source entities and relying on iterative LLM reasoning. However, in this setting each query contains tens to hundreds of genes, where no single gene is decisive and the label emerges only from their collective co-occurrence. Such hyper-entity queries fundamentally challenge local, entity-wise exploration strategies, which reason from individual genes, leading to poor scalability and substantial LLM cost. We propose GATHER (Graph-Aware Traversal with Hyper-Entity Retrieval), a convergence-centric retriever tailored to hyper-entity queries. It performs global multi-source graph traversal and identifies topological convergence points -- nodes jointly reachable from many input genes. These convergence nodes act as high-information hyper-entities that capture entity synergy. By incorporating node- and path-importance scoring, GATHER selects informative evidence entirely without LLM involvement during retrieval. Instantiated on a self-constructed cell-centric biological knowledge graph (VCKG), GATHER outperforms strong KG-RAG baselines (ToG, ToG-2, RoG, PoG) on two datasets (Immune and Lung), achieving the highest exact-match accuracy (27.45% and 59.64%) with only a single LLM call per sample, compared to 2--61 calls for KG-RAG baselines. Our results demonstrate that convergence nodes compress multi-entity signals into compact, high-information evidence that conveys more per item than multi-hop paths, providing an efficient global alternative to local entity-wise reasoning.

Retrieval-Augmented Generation (RAG) has become a core paradigm for enhancing factual grounding and multi-hop reasoning in Large Language Models (LLMs). Traditional text-based RAG often retrieves logically irrelevant pseudo-evidence, while graph-based RAG is frequently hindered by search-time pruning, which may discard potentially valid reasoning paths. Existing hybrid approaches primarily adopt simple evidence concatenation or unidirectional enhancement, which fails to address the fundamental "Information Island" problem caused by asymmetric reasoning flows between unstructured text and structured graphs. We propose \textbf{TGS-RAG}, a unified framework for \textbf{T}ext-\textbf{G}raph \textbf{S}ynergistic enhancement. TGS-RAG introduces a bidirectional mechanism: (i) a \textbf{Graph-to-Text} channel that employs a Global Voting strategy from visited graph nodes to re-rank and refine textual evidence, filtering out semantic noise; and (ii) a \textbf{Text-to-Graph} channel that utilizes the \textbf{Memory-based Orphan Entity Bridging} algorithm. This algorithm utilizes textual cues to proactively resurrect valid but previously pruned reasoning paths from the search history without additional database overhead. Experimental results on multiple multi-hop reasoning benchmarks demonstrate that TGS-RAG significantly outperforms state-of-the-art baselines, achieving a superior balance between retrieval precision and computational efficiency.

Retrieval-Augmented Generation (RAG) enhances Large Language Models (LLMs) by grounding responses in external knowledge during inference. However, conventiona RAG systems under-perform on structured tabular data, largely due to coarse retrieval granularity and insufficient table semantic comprehension. To address these limitations, we introduce FT-RAG, a fine-grained framework that employs knowledge association by decomposing tables into entry-level semantic units to construct a structured graph. FT-RAG employs a structural neighbor expansion mechanism to find semantically connected entities during graph retrieval, followed by multi-modal fusion to consolidate the context of table retrieval results. Further, to address the scarcity of specialized datasets in this domain, we introduce Multi-Table-RAG-Lib, a benchmark comprising 9870 QA pairs with high complexity and difficulty, curated to demand multi-table integration and text-table information fusion for reasoning. FT-RAG surpasses top-performing baselines across all metrics, achieving a 23.5% and 59.2% improvement in table-level and cell-level Hit Rates, respectively. Generation performance also sees a remarkable 62.2% increase in exact value accuracy recall. These metrics verify the framework's effectiveness in factual grounding across both pure tabular and heterogeneous table-text contexts. Therefore, our method establishes a new state-of-the-art performance for complex reasoning over mixed-modality documents.

Large Language Models (LLMs) lack persistent memory for long-term personalized conversations. Existing graph-based memory systems suffer from information dilution, absent provenance tracking, and uniform retrieval that ignores query context. We introduce MemORAI (Memory Organization and Retrieval via Adaptive Graph Intelligence), a framework that integrates three innovations: selective memory filtering with dual-layer compression to retain user-persona-relevant content, a provenance-enriched multi-relational graph tracking factual origins at the turn level, and query-adaptive subgraph retrieval with Dynamic Weighted PageRank that applies query-conditioned edge weighting. Evaluated on LOCOMO and LongMemEval benchmarks, MemORAI achieves state-of-the-art performance in memory retrieval and personalized response generation, demonstrating that selective storage, enriched representation, and adaptive retrieval are essential for coherent, personalized LLM agents.

The integration of Large Language Models (LLMs) with Retrieval-Augmented Generation (RAG) has significantly advanced Knowledge Graph Question Answering (KGQA). However, existing LLM-driven KGQA systems act as stateless planners, generating retrieval plans in isolation without exploiting historical query patterns: analogous to a database system that optimizes every query from scratch without a plan cache. This fundamental design flaw leads to schema hallucinations and limited retrieval coverage. We propose CacheRAG, a systematic cache-augmented architecture for LLM-based KGQA that transforms stateless planners into continual learners. Unlike traditional database plan caching (which optimizes for frequency), CacheRAG introduces three novel design principles tailored for LLM contexts: (1) Schema-agnostic user interface: A two-stage semantic parsing framework via Intermediate Semantic Representation (ISR) enables non-expert users to interact purely in natural language, while a Backend Adapter grounds the LLM with local schema context to compile executable physical queries safely. (2) Diversity-optimized cache retrieval: A two-layer hierarchical index (Domain $\rightarrow$ Aspect) coupled with Maximal Marginal Relevance (MMR) maximizes structural variety in cached examples, effectively mitigating reasoning homogeneity. (3) Bounded heuristic expansion: Deterministic depth and breadth subgraph operators with strict complexity guarantees significantly enhance retrieval recall without risking unbounded API execution. Extensive experiments on multiple benchmarks demonstrate that CacheRAG significantly outperforms state-of-the-art baselines (e.g., +13.2% accuracy and +17.5% truthfulness on the CRAG dataset).

Graph-based Retrieval-Augmented Generation (GraphRAG) extends traditional RAG by using knowledge graphs (KGs) to give large language models (LLMs) a structured, semantically coherent context, yielding more grounded answers. However, GraphRAG reasoning process remains a black-box, limiting our ability to understand how specific pieces of structured knowledge influence the final output. Existing explainability (XAI) methods for RAG systems, designed for text-based retrieval, are limited to interpreting an LLM response through the relational structures among knowledge components, creating a critical gap in transparency and trustworthiness. To address this, we introduce XGRAG, a novel framework that generates causally grounded explanations for GraphRAG systems by employing graph-based perturbation strategies, to quantify the contribution of individual graph components on the model answer. We conduct extensive experiments comparing XGRAG against RAG-Ex, an XAI baseline for standard RAG, and evaluate its robustness across various question types, narrative structures and LLMs. Our results demonstrate a 14.81% improvement in explanation quality over the baseline RAG-Ex across NarrativeQA, FairyTaleQA, and TriviaQA, evaluated by F1-score measuring alignment between generated explanations and original answers. Furthermore, XGRAG explanations exhibit a strong correlation with graph centrality measures, validating its ability to capture graph structure. XGRAG provides a scalable and generalizable approach towards trustworthy AI through transparent, graph-based explanations that enhance the interpretability of RAG systems.

Financial institutions must track over 60,000 regulatory events annually, overwhelming manual compliance teams; the industry has paid over USD 300 billion in fines and settlements since the 2008 financial crisis. We present ComplianceNLP, an end-to-end system that automatically monitors regulatory changes, extracts structured obligations, and identifies compliance gaps against institutional policies. The system integrates three components: (1) a knowledge-graph-augmented RAG pipeline grounding generations in a regulatory knowledge graph of 12,847 provisions across SEC, MiFID II, and Basel III; (2) multi-task obligation extraction combining NER, deontic classification, and cross-reference resolution over a shared LEGAL-BERT encoder; and (3) compliance gap analysis that maps obligations to internal policies with severity-aware scoring. On our benchmark, ComplianceNLP achieves 87.7 F1 on gap detection, outperforming GPT-4o+RAG by +3.5 F1, with 94.2% grounding accuracy ($r=0.83$ vs. human judgments) and 83.4 F1 under realistic end-to-end error propagation. Ablations show that knowledge-graph re-ranking contributes the largest marginal gain (+4.6 F1), confirming that structural regulatory knowledge is critical for cross-reference-heavy tasks. Domain-specific knowledge distillation (70B $\to$ 8B) combined with Medusa speculative decoding yields $2.8\times$ inference speedup; regulatory text's low entropy ($H=2.31$ bits vs. $3.87$ general text) produces 91.3% draft-token acceptance rates. In four months of parallel-run deployment processing 9,847 updates at a financial institution, the system achieved 96.0% estimated recall and 90.7% precision, with a $3.1\times$ sustained analyst efficiency gain. We report deployment lessons on trust calibration, GRC integration, and distributional shift monitoring for regulated-domain NLP.

Knowledge Graph-based Question Answering (KGQA) plays a pivotal role in complex reasoning tasks but remains constrained by two persistent challenges: the structural heterogeneity of Knowledge Graphs(KGs) often leads to semantic mismatch during retrieval, while existing reasoning path retrieval methods lack a global structural perspective. To address these issues, we propose Structure-Tracing Evidence Mining (STEM), a novel framework that reframes multi-hop reasoning as a schema-guided graph search task. First, we design a Semantic-to-Structural Projection pipeline that leverages KG structural priors to decompose queries into atomic relational assertions and construct an adaptive query schema graph. Subsequently, we execute globally-aware node anchoring and subgraph retrieval to obtain the final evidence reasoning graph from KG. To more effectively integrate global structural information during the graph construction process, we design a Triple-Dependent GNN (Triple-GNN) to generate a Global Guidance Subgraph (Guidance Graph) that guides the construction. STEM significantly improves both the accuracy and evidence completeness of multi-hop reasoning graph retrieval, and achieves State-of-the-Art performance on multiple multi-hop benchmarks.