Interpretable ML
ML: Machine Learning
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19 papers in the last four weeks, up 58% on the four weeks before. 0.2% of all new papers.
Latest papers 206
The current state of the art in AI/ML rests on deep neural architectures, which, in general, suffer from a lack of interpretability. Interpretability is crucial to gleaning insights while analyzing experimental data, where quantitative predictions may not be adequate for a scientist. We present a three layer neural architecture, SAMPAT (Smooth Approximation via Multivariate Polynomials and Analytic Transformations), that can provably learn a continuous, everywhere differentiable function, that can approximate any smooth function arbitrarily closely. SAMPAT's approximant can be expressed as a closed and compact algebraic, analytic expression, providing complete interpretability. Experiments on synthetic and benchmark datasets indicate that SAMPAT yields competitive performance with simpler representations. For many tasks, a two layer SAMPAT suffices. By imposing restrictions on the connectivity between neurons, SAMPAT may be used to provide a range of approximants, including regular and trigonometric polynomials, rational expressions, Gaussians, mixtures of Gaussians, as well as arbitrary combinations of the same; without restrictions, it learns a suitable structure. SAMPAT may be used to factorize polynomials and model nonlinear systems. With the addition of skip connections, a 4 to 6 layer SAMPAT is adequate to represent a substantive range of methods widely used in AI/ML, allowing the choice of a model's family, not just its parameters, to also be optimized as part of the learning process.
Steering Neural Network Training through Interpretable Constraints Based on Partial Dependence
Over the last few years, there has been an increased interest in making machine learning models more interpretable. Although a great deal of effort goes into developing techniques for interpreting the interactions learned by a given model, fewer studies focus on assessing the quality of such explanations. Even fewer focus on how to adjust the model to produce explanations faithful to prior knowledge, a process known as explanation-guided learning. Furthermore, most approaches in this area focus on classification problems and usually assume prior knowledge about which input features or regions are most important. In this work, we introduce a new approach to steering neural networks based on partial dependence, such that their average response to certain features aligns with specific functional domain knowledge about the problem. We empirically demonstrate on a range of regression problems, including dynamical systems forecasting, that models whose training has been controlled using our method perform better than unconstrained models and are more data-efficient. Moreover, we highlight that interpretations obtained from the former actually align with the user-provided knowledge, whereas those obtained from the latter do not.
DeepPySR -- A Symbolic Regression Framework with Dynamic Pruning, Pareto Selection, and Hierarchical Composition for Real-World Scientific Discovery
Symbolic regression (SR) discovers analytical equations from data, yielding glass-box models with directly interpretable formulas, unlike black-box methods that rely on unstable post-hoc tools such as SHAP or LIME. This transparency is crucial in clinical medicine and social science, but SR faces three challenges: high-dimensional inputs, principled selection of Pareto-front formulae, and data irregularities such as multicollinearity and class imbalance. We introduce DeepPySR, which addresses these issues with a dynamic variable-pruning schedule to remove irrelevant features during search, an exponential Pareto selection criterion that eliminates trade-offs between accuracy and complexity, and a multi-layer architecture for hierarchical symbolic composition. On four Feynman physics benchmarks and seven biomedical and social-science datasets, DeepPySR outperforms PySR and baselines on body fat (R: 0.794 vs.\ 0.702), heart disease (F1: 0.898 vs.\ 0.787), student performance (R: 0.964 vs.\ 0.948), and Raine BMI (R: 0.525 vs.\ 0.370), producing interpretable formulas aligned with domain risk factors.
Trustworthy Machine Learning through the Lens of Combinatorial Optimization: Survey and Research Perspectives
Modern machine learning (ML) increasingly relies on complex models whose behavior is difficult to characterize beyond empirical performance metrics. Across a wide range of tasks, including prediction, generation, and decision-making, models with similar empirical performance can exhibit markedly different properties in terms of their transparency, interpretability, robustness, fairness, privacy, and certifiability. This survey highlights how optimization- and certification-oriented reasoning can provide a useful framework for reasoning about such differences, supporting tasks ranging from model training and selection to auditing and certification. We review and synthesize recent advances at the intersection of combinatorial optimization (CO) and trustworthy ML, covering both training and post-training tasks, including interpretable model learning, explanation generation, robustness analysis, fairness auditing, model compression, and privacy attacks and protections. Across these domains, CO formulations offer additional capabilities over purely heuristic approaches, e.g., gradient-based ones, notably global guarantees, formal certificates, and explicit treatment of trade-offs. While scalability remains an important challenge, continued progress in solvers and hybrid algorithms suggests a growing role for CO in the design and deployment of trustworthy ML systems.
ORCAID: Oblique Rule-Based Continuous-Action Interpretation for Deep RL Policies
Explainability remains a key issue in reinforcement learning (RL). Distilling an interpretable policy from an agent trained in a complex environment is particularly challenging when the action space is continuous. We introduce ORCAID, a novel method for extracting interpretable rule-based policies from RL agents operating in mixed continuous-discrete environments with continuous action spaces. Our main contribution is an efficient oblique decision tree training algorithm that partitions the state space by hyperplanes and fits local linear models. The key idea lies in a three-stage split search: efficient random initialization, local refinement, and backward elimination. Finally, adjacent leaves are merged to yield a concise set of interpretable rules describing a given deep RL policy. We evaluate ORCAID across multiple RL environments, demonstrating that the extracted rule-based policies maintain strong performance with a low number of parameters and can even be used to improve the performance of the original deep RL policy.
Complexity-Budgeted, Interaction-Aware Interpretable Model for Tabular Data
Inherently interpretable classifiers for tabular data typically rely on sparse features, rules, or patterns that users can inspect directly. The marginal feature-screening step common to these methods can discard variables whose predictive value emerges only through joint configurations with other variables. We present Interaction Aware Interpretable Machine Learning (IAIML), a framework that addresses this limitation through three coordinated mechanisms: adaptive per-feature discretization, finite-grid pairwise interaction scoring, and a partitioned explanation budget. Detected interactions are routed through one of two strategies: relaxing the screening filter so that interaction-supported variables enter the pattern search, or constructing explicit pair terms for a sparse downstream classifier. On a 40-dataset panel comprising 24 real-world tabular benchmarks and 16 synthetic interaction stress tests, evaluated under nested cross-validation, IAIML achieves mean AUC within 1.4 points of tuned gradient-boosted ensembles while requiring roughly 14--28 times fewer fitted explanation components. On datasets with strong pairwise interaction structure and low marginal signal, IAIML outperforms all baselines. Among compact interpretable methods, IAIML is comparable to RuleFit in AUC and component count and is less expensive to tune. EBM obtains a small but significant AUC advantage across the full panel, with a substantially larger lookup-table footprint. Performance degrades on datasets requiring higher-order interactions beyond the pairwise scope. Component-isolated ablations confirm that adaptive discretization and interaction-aware admission each contribute incrementally. These results support IAIML as a compact, interaction-aware framework appropriate for settings where bounded explanation size and controlled treatment of feature interactions are design requirements.
Efficient Bayesian Deep Ensembles via Analytic Predictive Inference
We introduce an efficient Bayesian deep ensemble method for predictive regression designed to enhance interpretability while maintaining competitive predictive performance and computational efficiency. Our method combines the statistical rigor of Bayesian inference with the scalability of deep ensembles, providing calibrated uncertainty estimates that enable its use not only for standalone prediction but also as a component within broader learning systems. To achieve these goals, our work relies on three key design components: (i) low-dimensional ensemble representation: predictions are expressed as a combination of a small number of trained neural predictors, enabling scalable inference whose cost depends on ensemble size rather than dataset size; (ii) closed-form Bayesian aggregation: ensemble predictions are combined using Bayesian linear regression, yielding interpretable posterior weights and calibrated uncertainty without approximate inference; and (iii) Independent ensemble training: multiple neural networks are trained separately, producing diverse predictive representations that improve robustness and uncertainty calibration. Empirical results on standard regression benchmarks demonstrate that the proposed approach achieves competitive predictive performance while maintaining reliable uncertainty estimates across settings.
ExplAIner: A Declarative Query Language for Explaining Classification Models
The XAI community has studied a wide range of queries and scores for explaining predictions of ML models. From a data management perspective, this proliferation of explanation notions calls for declarative query languages in which such notions can be specified, combined, and analyzed uniformly. In this paper, we develop such a framework for Boolean models. We first revisit FOIL, an interpretability query language for black-box models, and show that it has two fundamental limitations: it cannot express central optimality-based explanation queries, and its evaluation problem over decision trees is hard for every level of the polynomial hierarchy. We then introduce ExplAIner, a query language based on FOIL with an extended vocabulary and a layered structure. We show that ExplAIner can express a broad family of explanation notions, including abductive, contrastive, feature-based, and distance-based queries. We also prove that the evaluation problem for each query in ExplAIner belongs to the Boolean hierarchy over every class of Boolean models for which some basic predicates can be evaluated in polynomial time. In particular, that property holds for deterministic and decomposable Boolean circuits. Finally, we introduce Opt-FOIL, an optimization-oriented fragment of ExplAIner for computing explanations that are minimal with respect to strict partial orders, and prove that its evaluation problem is in under the same tractability assumptions. These complexity results have a direct algorithmic consequence: a fixed ExplAIner query can be evaluated with a fixed number of calls to a SAT solver, while a notion of explanation specified in Opt-FOIL can be computed with a polynomial number of such calls. This is particularly relevant in formal XAI, where SAT solvers have been successfully used to compute explanations for several classes of ML models.
Driving the Wrong Way: Leveraging Interpretability in End2End Autonomous Driving Models
The increasing adoption of end-to-end learning for autonomous driving introduces increased model complexity and opacity, raising the risk of learning undesired or erroneous behavior. In this work, we integrate unsupervised dictionary learning as a post hoc interpretability module within state-of-the-art driving models to decompose driving behavior into semantically meaningful concepts while demonstrating their causal influence on the model's driving decisions. We propose a stepwise framework for extracting and interpreting meaningful concepts from the end-to-end model and connecting them to the multifaceted model outputs, thereby revealing the underlying decision-making logic for the prediction of future trajectories. Furthermore, targeted interventions at the concept level allow us to manipulate and correct driving decisions, resulting in measurable improvements in overall driving performance. We thus demonstrate how interpretability can effectively be used to reduce model opacity, uncover erroneous behavior, and enable targeted mitigation, ultimately boosting model performance.
Platonic Projection Structures: Operator-Induced Observability in Representation Learning
We characterize observability in representation learning through Platonic Projection Structures (PPS), an operator-theoretic framework for analyzing representation accessibility under partial observation. Rather than treating observable outputs as direct reflections of latent representations, PPS models observation through a self-adjoint positive semidefinite operator acting on a latent representation space. A system is represented as a triple , where is a latent representation space, is an observation operator, and defines an induced scalar observable. Observability is characterized by the quotient geometry , representing equivalence classes of latent states indistinguishable under observation. We show that quantum measurement and representation inference under linear observation models share this operator-theoretic structure while differing in the algebraic properties of their observation operators; the correspondence is structural rather than physical. Representation transfer and knowledge distillation can likewise be interpreted as approximate preservation of observable geometry through . PPS also reveals a structural limitation of output-based interpretability: latent components in are inaccessible from induced observables, imposing intrinsic constraints on attribution and explanation methods. Controlled empirical validations demonstrate kernel-invariant observability, projection-induced attribution gaps, and rank-controlled observable geometry in latent representation spaces. PPS thus provides an explicit characterization of observability through operator-induced quotient geometry and a unified perspective on representation accessibility, interpretability, and projection-mediated inference.
Caption Bottleneck Models
Concept Bottleneck Models (CBMs) provide interpretability by routing predictions through a layer of human-understandable concepts. However, defining an optimal concept set for a specific dataset remains an open challenge. Existing approaches rely on expensive expert annotations or LLM-generated lists based solely on class names. Even "open-vocabulary" variants typically depend on static concept sets, which restrict discovery and introduce label bias. Furthermore, traditional CBMs often suffer from information leakage, where unmodeled visual features bypass the bottleneck and compromise the integrity of the explanations. To overcome these limitations, we propose Caption Bottleneck Models (CaBM), a framework that circumvents the need for predefined concept sets by replacing rigid concept layers with free-form natural language. By representing images via LMM-generated captions and training a classifier strictly on this text, CaBM ensures a leakage-free architecture by construction. Additionally, by analyzing the text classifier post-training, CaBM autonomously discovers high-quality, dataset-specific concepts. Our results across fine- and coarse-grained benchmarks demonstrate that CaBM achieves competitive accuracy while preserving interpretability without the constraints of external dictionaries or manual labeling.
Multilayer Q-Matrix-Embedded Neural Network for Cognitive Diagnosis (M-QCDNet): Structure-Aware Deep Learning Architecture for Psychometric Interpretability
The research proposes a multilayer Q-matrix-embedded neural network for cognitive diagnosis (M-QCDNet), which integrates the structural interpretability of cognitive diagnostic models (CDMs) with the deep learning neural network (NN). M-QCDNet structures the item-skill relationship using the Q-matrix as a structural prior, ensuring latent mastery profiles remain interpretable and consistent with cognitive theory, followed by the proposed loss function with an L2 penalty to penalize skills not aligned with the Q-matrix and to balance predictive performance and structural alignment. Corresponding evaluation matrices, the interpretable alignment-based metrics that quantify the degree to which predicted skill activations correspond to item-level skills, were further developed. M-QCDNet offers practical benefits for classroom practice, enabling early detection of learning difficulties and supporting mastery-based interventions. By embedding diagnostic validity into model design, M-QCDNet bridges psychometric transparency and neural flexibility, advancing interpretable, fair, and actionable AI for cognitive diagnostics.
TreeAgent: A Generalizable Multi-Agent Framework for Automated Bias Labeling in Forestry via Compiled Expert Rules and Vision-Language Models
Human-labeled data are widely used as reference annotations in ML, despite known variability across annotators in many expert-driven domains. In addition, expert annotation is slow, inconsistent, and remains a major bottleneck for scaling tasks like tree height bias classification in forestry remote sensing. We propose a multi-agent system (MAS) that orchestrates expert decision trees with Vision-Language Models (VLMs), treating the decision tree as a structural prior while VLMs perform localized semantic perception at individual nodes, with multi-agent voting to mitigate VLM stochasticity. We formalize a Decoupled Declarative Decision (D3) Framework that enables zero-modification generalization across diverse expert-defined decision structures. On a tree bias classification testbed, our framework outperforms supervised ML baselines and reduces the amount of expert labeling effort required. These results suggest that agentic orchestration of VLMs with expert priors can reproduce expert-defined labeling procedures at substantially lower annotation cost while maintaining interpretability.
Multistage Defer Trees for Hybrid Interpretability: If at First You Can't Succeed, Tree Again
Recent work has shown that well-optimized individual decision trees can match complex black box models in some settings, primarily in noisy domains. For the remaining settings, however, complex ensembled compositions of trees often achieve higher accuracy at the cost of interpretability, leaving practitioners with difficult modeling decisions along an accuracy-interpretability tradeoff. Ideally, we would like to classify as much of the data as possible with one or a small number of trees, achieving interpretability for most samples while maintaining state-of-the-art accuracy. We introduce Multistage Defer Trees: a sequence of sparse decision trees that each make predictions for most samples, while deferring a small proportion to the next tree in the sequence or, ultimately, to a black box. We demonstrate that we can train this model class to match the performance of complex tree-based ensembles while routing most samples through only one or a small number of sparse decision trees. We discuss a range of techniques for training these models while maintaining simplicity. Our method expands the accuracy--interpretability frontier in settings where single-tree methods remain insufficient, demonstrating that even when complex models are necessary, they need not be fully opaque.
Structure-Regularized Interpretable TCR-Epitope Prediction
T cell receptor (TCR)-epitope binding prediction is essential for understanding adaptive immunity and developing immunotherapies. Existing sequence- and structure-based models often generalize poorly to unseen epitopes and provide limited interpretability. Furthermore, the impact of generated structures on model learning remains unclear. We present TCR-SRIM, a structure-regularized interpretable-by-design model that combines protein language model embeddings with interpretable contact prototypes to capture residue-level TCR-epitope interactions. TCR-SRIM achieves state-of-the-art predictive performance and improved interpretation quality on the TCR-XAI benchmark. Using its inherent interpretability, we further evaluate the effect of generated structures on model learning. While structures predicted by AlphaFold3, TCRModel2, and tFold-TCR yield competitive performance, they lead to less accurate interaction patterns and reduced binding-site diversity than experimentally-resolved structures. Our results highlight limitations of current structure prediction models for TCR-epitope learning and demonstrate the value of interpretable-by-design models for studying generated biological structures.
Improved Predictive Performance and Interpretability for Mesomorphic Neural Networks Using Local Fidelity Regularization
Interpretable Mesomorphic Neural Networks (IMNs) offer a promising framework that combines the predictive power of deep neural networks with the interpretability of linear models. However, the original formulation lacks safeguards to ensure that the learned interpretations are in fact reliable. In particular, the network is free to concentrate all explanatory variance into a single weight of the linear output layer, achieving strong predictive performance while producing interpretations that are largely meaningless. Paradoxically, the L1 penalty proposed to encourage sparse solutions exacerbates this problem by further incentivizing such degenerate configurations. To address this vulnerability, we introduce Local Fidelity Regularization (LFR), a novel penalty term that prevents degenerate weight collapse by aligning the linear output weights with local data variations. This structural constraint guarantees faithful explanations and substantially improves the reliability of model interpretations. Furthermore, empirical evaluations across the OpenML benchmark suite demonstrate that LFR does not compromise accuracy for explainability; rather, it achieved improved AUROC over the unregularized IMN. By yielding results highly competitive with state-of-the-art black-box models, LFR provides the dual benefit of reliable interpretability and superior predictive performance. Source code and usage instructions are available at https://github.com/hugohammer/LFR-IMN.git.
Reliability, Faithfulness, and the Limits of Post-hoc Explanations of Opaque Scientific Models
Post-hoc explanation methods are routinely used to interpret scientific machine learning models, with the deliverable understood to be insight into the phenomenon the model has been trained on. The transition may be taken to be secured once the model is reliable enough and the explanation faithful enough. We argue it is not. Reliability checks that the model's predictions match the phenomenon's outcomes, and faithfulness checks that the explanation matches the model, but neither checks whether the model works as the phenomenon works, which is what a claim about structure requires. The chain can support candidate hypotheses under external corroboration, but it cannot, on its own, support claims about how the phenomenon is in fact structured.
Towards Explainable Adjudicative Variance: Quantifying Judicial Discretion via Gated Multi-Task Learning
Legal outcome prediction must disentangle objective case facts from adjudicative context. Merit-based rulings rely on factual evidence while technical disposals may hinge on judicial discretion. We propose a Judge-Aware Gated Multi-Task Learning architecture that explicitly models this distinction. We introduce a fine-grained outcome taxonomy to supervise the encoder, enforcing a structural regularization that disentangles distinct semantic pathways. This granular legal curriculum enables our Gated Fusion mechanism to dynamically modulate reliance on judge identity. We evaluate our approach on 13,937 UK Employment Tribunal decisions. We benchmark our design against supervised fine-tuning (SFT) of a Gemma-4 26B-A4B backbone, in which judge identity and the taxonomy are injected as prompt tokens or autoregressive output targets. The two contextual signals compose only weakly when forced through a single autoregressive channel. In contrast, coupling a LoRA-adapted Gemma-4 encoder with our gated architecture defines a new state of the art on this benchmark while requiring an order of magnitude fewer trainable parameters than the generative SFT baselines, with gains concentrated on the most ambiguous and rarest outcome classes. Beyond accuracy, the architecture is interpretable; learned judge embeddings and calibration profiles localize the cases where adjudicative context drives the prediction. These results indicate that, for identity-conditioned classification of legal outcomes, the choice of conditioning interface dominates scale: differentiable structured composition yields more accurate, more parameter-efficient models than prompt-based composition over a substantially larger backbone.
Interpreting "Interpretability" and Explaining "Explainability" in Machine Learning in Physics
We review the concepts of interpretability and explainability as they apply to machine learning in physics. We define interpretability as concerning the structural transparency of a model (the ability to understand or approximate its inner workings) and explainability as concerning the scientific content of a model (the ability to map it onto domain knowledge). We discuss the trade-offs each entails (interpretability vs. expressivity; explainability vs. adaptability), the contexts in which each is needed, and the intrinsic and post-hoc tools available for achieving them. Throughout, we emphasize that machine-learned models are subject to the same scientific questions as classical models, differing only in scale, and that interpretability and explainability are best understood as deliberate modeling choices rather than inherent properties. We also emphasize the importance of task specification and intervention plans as a core aspect of model design.
Interpretable Concept-Guided Polynomial Tabular Kolmogorov-Arnold Network for EEG-Based Mild Cognitive Impairment Detection
Early and scalable detection of mild cognitive impairment (MCI) remains an unresolved clinical challenge. Existing EEG-based screening approaches are constrained by handcrafted feature pipelines that discard neurophysiologically meaningful domain structure and deep learning classifiers that sacrifice interpretability for performance. No existing work unifies physiologically organized concept encoders, cross-concept interaction modeling, and nonlinear tabular classification in a sleep EEG-based MCI detection framework. This study proposes Concept-guided Polynomial-transformed Tabular learning using Kolmogorov-Arnold Network (CPTabKAN), which maps heterogeneous EEG-derived features into domain-informed concept representations, expands them via degree-2 polynomial transformation to expose first- and second-order interactions, and applies a Fourier-parameterized TabKAN classifier to learn nonlinear decision boundaries. CPTabKAN was evaluated on the Study of Osteoporotic Fractures cohort (372 subjects, overnight polysomnography), using 1,379 features organized into ten physiologically motivated concept groups. Under 10-fold cross-validation, CPTabKAN-Second Order achieved a weighted F1-score of 0.9038 (SD 0.034), outperforming GradientBoosting by 5.65 percentage points (t(9)=1.934,p=0.043, one-sided paired test), with advantages persisting under SMOTE-based balancing. Ablation analysis confirmed independent contributions from each component. Concept importance analysis revealed that power spectral density, multi-scale entropy, and Hjorth parameters dominated first-order weights, while cross-concept interactions involving Lempel-Ziv-Welch complexity, statistics, demographics, and slow oscillations exceeded all first-order scores. These results demonstrate that concept-structured, interaction-aware tabular learning surfaces physiologically coherent reasoning, supporting clinical trust.
What Does a Pathological Speech Assessment Model Know about Acoustic Features? A Case Study on Oral and Oropharyngeal Cancer Patients
This work investigates the interpretability of a Wav2Vec 2.0based speech intelligibility assessment model for oral and oropharyngeal cancer patients through canonical correlation analysis. By measuring the correlation between the model embeddings and eGeMAPS low-level descriptors (LLDs) as an interpretable reference, we analyze how acoustic information is encoded across the model layers. The analysis is conducted at two levels: individual LLDs layer-wise, and group-level: prosodic, spectral, and voice quality. Results show that the learned representations are most strongly correlated with spectral and prosodic features, with the first MFCC coefficient yielding the highest correlations across all layers. At the group level, spectral and prosodic groups achieve correlations of 0.77 and 0.71 respectively, while voice quality reaches 0.65. Beyond model interpretability, this work also offers practical guidance on acoustic feature selection for pathological speech assessment.
Discovering Latent Groups for Robust Classification
Machine learning models exploit spurious correlations, achieving high average accuracy but failing disproportionately on underrepresented subgroups. Existing methods address this by adjusting network parameters, guided either by subgroup annotations or inferred pseudo-group labels. Yet at inference, these methods produce only a class prediction, with no insight into a sample's latent subgroup. We propose neural classification trees (NCT), a framework that achieves robustness by encoding subgroup structure in its tree-shaped architecture. By routing each sample to an "easy" or "hard" node of this tree -- based on prediction correctness -- and reusing these routes as pseudo-labels for the next iteration, NCT disentangles conflicting subgroups, without requiring subgroup supervision. We evaluate NCT on five benchmarks spanning binary and multi-class spurious correlations. Our experiments show that the learned tree topology provides strong interpretability by consistently isolating minority subgroups, which provides a transparent mapping between the model architecture and the data's latent group structure, while yielding competitive robustness with state-of-the-art methods.
Ultra-Peripheral Collisions as a Nuclear-Structure Interferometer with Interpretable Multitask Deep Learning
Precise knowledge of nuclear structure is essential across fundamental physics, yet probing these structures is notoriously difficult. To address this challenge, ultra-peripheral collisions (UPCs) provide a femtoscopic tomography for imaging the atomic nucleus. UPCs offer a pristine electromagnetic pathway: coherent vector-meson photoproduction generates patterns of diffraction and two-source interference that directly encode the nuclear spatial density. Turning these patterns into quantitative constraints is, however, a challenging inverse problem, complicated by correlated sensitivities to deformation and neutron skin, phase smearing, and experimental backgrounds. Here we introduce an interpretable Multitask deep-learning framework that maps transverse momentum distributions to multiple nuclear-structure indicators simultaneously and identifies the kinematic regions driving each inference. We demonstrate the approach with coherent photoproduction in collisions, showing that the learned features separate diffraction-dominated and interference-dominated information and provide analysis-ready observables for future high-luminosity data.
Clusters are All You Need: Pre-Training the Tsetlin Machine with Semantic Clusters from Language Models for Interpretability
Pre-trained language models such as BERT achieve strong text classification performance but lack transparency, limiting their use in high-stakes settings. The Tsetlin Machine (TM) offers fully interpretable, clause-based reasoning but captures little semantic information, and prior attempts to bridge the two rely on static word embeddings that miss contextual meaning. We propose a semantic pre-training framework that transfers knowledge from a pre-trained language model into a TM without using embeddings. Text samples are grouped into semantically coherent clusters with K-means or Top2Vec, and the resulting cluster-sample pairs pre-train a non-negated TM with enhanced Type I feedback. The TM thereby learns interpretable semantic keywords that are fine-tuned on downstream tasks. Across five datasets, our method substantially outperforms vanilla and embedding-based TMs and reaches performance competitive with BERT while remaining interpretable.
Can Physician Expertise Improve Machine Learning Identification of Delirium?
Delirium is common in hospitalized patients and is often missed in routine care. We present a user-centered interactive machine learning (UC-iML) framework for delirium detection support that combines physician-guided feature refinement with interpretable modeling. Using 3,862 labeled admissions from six Toronto hospitals in the General Medicine Inpatient Initiative (GEMINI), we integrate administrative variables, laboratory results, medications, and a radiology-derived text indicator. Physicians guide feature refinement and model evaluation, and Shapley Additive exPlanations (SHAP) are used to summarize feature attribution. We evaluate standard supervised classifiers with temporally separated holdout testing and a later-phase validation cohort. Compared with automated and baseline variants, the proposed framework shows better overall discrimination and stronger temporal robustness, while the explanations highlight clinically meaningful signals. These results support UC-iML as a practical human-in-the-loop framework for clinically relevant delirium modeling.
Medical Heuristic Learning: An LLM-Driven Framework for Interpretable and Auditable Clinical Decision Rules
Predictive modeling for clinical decision support requires both strong predictive performance and transparent, auditable, and human-reviewable decision logic. Although deep learning and tree-based ensemble methods can achieve high accuracy, their black-box nature remains a major obstacle to trustworthy clinical deployment. Moreover, clinical prediction often operates under practical constraints, including limited sample sizes, severe class imbalance, and feature evolution arising from changes in diagnostic criteria or clinical documentation practices. We propose Medical Heuristic Learning (MHL), a constrained paradigm for LLM-assisted rule learning. Rather than relying on updates to implicit model weights, MHL integrates statistical probes, medical knowledge probes, initial rule synthesis, and iterative rule optimization to construct an executable rule-based expert system. The resulting rule system is expressed entirely using the native logical and control-flow constructs of a programming language. Valid rule versions are recorded and retained along the search trajectory, making the decision logic explicit, interpretable, and auditable. MHL also supports continual learning by using previously validated rules as a starting point and iteratively revising them in response to updated feature information under data drift or feature evolution. MHL is not tied to any specific programming language. Comprehensive experiments on medical datasets show that MHL achieves predictive performance comparable to that of state-of-the-art methods, performs favorably in small-sample and highly imbalanced settings, and supports the transfer and adaptive revision of validated rules under feature evolution. Overall, these findings suggest that non-gradient-based heuristic systems offer an approach to balancing predictive performance and transparency in clinical decision support.
The limits of interpretability in multiple linear regression
Interpreting machine-learning models has attracted increasing attention, particularly in the physical sciences, where one often seeks to understand the underlying mechanisms rather than merely make predictions. Multiple linear regression is often regarded as an interpretable alternative to more complex models, such as deep neural networks, because its predictions are expressed as explicit weighted sums of input features. However, when input features are strongly correlated, namely in the presence of multicollinearity, the learned weights can exhibit large dataset-to-dataset fluctuations and oscillatory behavior across physically similar features, making their interpretation difficult or even impossible. Although the instability of the weights under multicollinearity is well known in statistics, its consequences for physical interpretation, in particular its connection to oscillatory weights across physically similar features, have not been systematically clarified. Here, we theoretically discuss the mechanism behind this loss of interpretability by analyzing the eigenmodes of the feature correlation matrix. We show that small-eigenvalue modes associated with multicollinearity amplify fluctuations in the weights and generate oscillatory patterns that do not necessarily reflect meaningful contributions. We test this theoretical picture numerically on physics datasets and show that Ridge regularization suppresses these unstable modes, although the resulting weights must still be interpreted with caution. We further confirm the generality of our findings beyond physics by analyzing a diverse collection of publicly available datasets. Our results clarify why, in the presence of multicollinearity, physical interpretation can remain difficult even for linear regression models.
Theorem-Grounded Execution Ontologies for Interpretable Machine Reasoning
Large language models have achieved impressive performance on reasoning tasks spanning mathematics, science, programming, and commonsense inference. Despite these advances, their reasoning processes remain largely latent, making them difficult to interpret, verify, replay, debug, and transfer across domains. Existing approaches such as chain-of-thought, tree-of-thoughts, graph-of-thoughts, and tool-augmented reasoning expose intermediate reasoning artifacts but typically lack explicit execution semantics, formal state representations, and verifiable reasoning structures. We introduce Theorem-Grounded Execution Ontologies (TGEO), a framework that models reasoning as an executable state-transition process rather than a sequence of generated tokens. Given an input problem, TGEO identifies relevant theorem families, binds the problem to a domain ontology, discovers semantic objects, instantiates states and operators, constructs predicates and contracts, and synthesizes an executable reasoning graph. The resulting graph provides an interpretable, replayable, and auditable representation of reasoning in which every state transition, operator application, and validation step is explicitly represented. TGEO integrates five architectural components: (1) theorem-grounded reasoning priors, (2) executable ontologies, (3) operator-mediated state transitions, (4) predicate and contract-based execution validation, and (5) architectural auditing and failure localization. We evaluate TGEO on theorem-intensive reasoning tasks derived from mathematical benchmark domains and a curated Golden Execution Suite. Our findings demonstrate the value of executable reasoning representations for interpretable, verifiable, and reproducible AI reasoning systems.
iLENS: Interpretable LLM-Guided Mixture-of-Experts for Neuroimaging Survival Analysis
Alzheimer's Disease (AD) is a complex neurodegenerative disorder that continues to impact millions of people worldwide. Predicting AD conversion during the prodromal stage remains critical for disease understanding and patient care. As such, survival models are widely used for AD risk prediction, yet they are typically static predictors with limited interpretability and no capacity for natural language reasoning. In this work, we propose iLENS, an interpretable large language model (LLM) guided framework based on mixture-of-experts (MoE) for survival prediction in AD conversion. Our approach uses LLM to synthesize structured neuroimaging measurements and unstructured information to guide expert routing. Our framework demonstrates competitive predictive performance and capability in patient subtyping. Furthermore, our framework provides transparent, biologically grounded rationales for its routing decisions, bridging the gap between high-performance survival analysis and interpretable clinical decision support.
Machine Learning for Biomedical Raman Spectroscopy: From Spectral Acquisition to Clinical Translation
Raman spectroscopy provides label-free, chemically specific characterization of biological systems and has become an important tool for cancer diagnosis, molecular subtyping, microbiological identification, and intraoperative decision support. Biomedical Raman spectra are, however, high-dimensional, noisy, and affected by fluorescence background, acquisition variability, and biological heterogeneity, making robust computational analysis essential. This review examines the role of machine learning across the biomedical Raman spectroscopy pipeline, from preprocessing and signal correction to unsupervised structure discovery, supervised diagnosis and molecular stratification, representation and transfer learning, explainability, biomarker discovery, and multimodal integration with imaging, pathology, and molecular profiling. Emphasis is placed on the use of machine learning not only for diagnostic classification, but also for biologically interpretable and clinically actionable analysis. We also discuss the main barriers to clinical translation, including limited dataset sizes, inter-instrument variability, inconsistent preprocessing, insufficient external validation, reproducibility concerns, and limited sharing of software, data, and metadata. We argue that progress will require methodological advances together with standardization, robust validation, explainability, and deployment-ready analytical frameworks. By integrating methodological, biomedical, and translational perspectives, this review outlines key directions for developing reliable and clinically deployable Raman-AI systems.