LLM Reasoning with Graphs

LLM: Large Language Model

Overview

The field studies how large language models can use graphs to represent relationships, retrieve evidence, and organize multi-step reasoning, especially when answers depend on several connected facts. Common approaches include retrieving paths or subgraphs from knowledge graphs for tasks such as WebQSP and CWQ question answering, giving models tools to navigate graphs, and integrating graph neural networks, symbolic rules, or executable code with language-model reasoning. Other work represents reasoning itself as a chain, tree, or directed graph, and trains models with supervised traces or reinforcement learning to explore paths and verify intermediate steps. These methods can improve multi-hop accuracy and make evidence easier to inspect, but benchmarks also show that graph information is not always used correctly; handling incomplete or noisy evidence, scaling to larger graphs, and demonstrating genuine structural understanding remain open challenges.

Latest papers

211 papers28 papers in the last four weeks, up 12% on the four weeks before. 0.2% of all new papers.

Mar 5, 2026

S-Path-RAG: Semantic-Aware Shortest-Path Retrieval Augmented Generation for Multi-Hop Knowledge Graph Question Answering

We present S-Path-RAG, a semantic-aware shortest-path Retrieval-Augmented Generation framework designed to improve multi-hop question answering over large knowledge graphs. S-Path-RAG departs from one-shot, text-heavy retrieval by enumerating bounded-length, semantically weighted candidate paths using a hybrid weighted kk-shortest, beam, and constrained random-walk strategy, learning a differentiable path scorer together with a contrastive path encoder and lightweight verifier, and injecting a compact soft mixture of selected path latents into a language model via cross-attention. The system runs inside an iterative Neural-Socratic Graph Dialogue loop in which concise diagnostic messages produced by the language model are mapped to targeted graph edits or seed expansions, enabling adaptive retrieval when the model expresses uncertainty. This combination yields a retrieval mechanism that is both token-efficient and topology-aware while preserving interpretable path-level traces for diagnostics and intervention. We validate S-Path-RAG on standard multi-hop KGQA benchmarks and through ablations and diagnostic analyses. The results demonstrate consistent improvements in answer accuracy, evidence coverage, and end-to-end efficiency compared to strong graph- and LLM-based baselines. We further analyze trade-offs between semantic weighting, verifier filtering, and iterative updates, and report practical recommendations for deployment under constrained compute and token budgets.
Mar 5, 2026

Mario: Multimodal Graph Reasoning with Large Language Models

Recent advances in large language models (LLMs) have opened new avenues for multimodal reasoning. Yet, most existing methods still rely on pretrained vision-language models (VLMs) to encode image-text pairs in isolation, ignoring the relational structure that real-world multimodal data naturally form. This motivates reasoning on multimodal graphs (MMGs), where each node has textual and visual attributes and edges provide structural cues. Enabling LLM-based reasoning on such heterogeneous multimodal signals while preserving graph topology introduces two key challenges: resolving weak cross-modal consistency and handling heterogeneous modality preference. To address this, we propose Mario, a unified framework that simultaneously resolves the two above challenges and enables effective LLM-based reasoning over MMGs. Mario consists of two innovative stages. Firstly, a graph-conditioned VLM design that jointly refines textual and visual features through fine-grained cross-modal contrastive learning guided by graph topology. Secondly, a modality-adaptive graph instruction tuning mechanism that organizes aligned multimodal features into graph-aware instruction views and employs a learnable router to surface, for each node and its neighborhood, the most informative modality configuration to the LLM. Extensive experiments across diverse MMG benchmarks demonstrate that Mario consistently outperforms state-of-the-art graph models in both supervised and zero-shot scenarios for node classification and link prediction. The code will be made available at https://github.com/sunyuanfu/Mario.
Mar 5, 2026

Non-Parametric Structural Priors for Geometry Theorem Prediction

Multi-step theorem prediction is a central challenge in geometry problem solving. Existing neural-symbolic approaches rely heavily on supervised parametric models, which exhibit limited generalization to evolving theorem libraries. In this work, we explore training-free theorem prediction through the lens of in-context learning (ICL). We identify a critical scalability bottleneck, termed Structural Drift: as reasoning depth increases, the performance of vanilla ICL degrades sharply, often collapsing to near zero. We attribute this failure to the LLM's inability to recover latent topological dependencies, leading to unstructured exploration. To address this issue, we propose Theorem Precedence Graphs, which encode temporal dependencies from historical solution traces as directed graphs, and impose explicit topological constraints that effectively prune the search space during inference. Coupled with retrieval-augmented graph construction and a stepwise symbolic executor, our approach enables LLMs to act as structured planners without any gradient-based optimization. Experiments on the FormalGeo7k benchmark show that our method achieves 89.29% accuracy, substantially outperforming ICL baselines and matching state-of-the-art supervised models. These results indicate that explicit structural priors offer a promising direction for scaling LLM-based symbolic reasoning.
Mar 5, 2026

LLM-Grounded Explainable AI for Supply Chain Risk Early Warning via Temporal Graph Attention Networks

Disruptions at critical logistics nodes pose severe risks to global supply chains, yet existing risk prediction systems typically prioritize forecasting accuracy without providing operationally interpretable early warnings. This paper proposes an evidence-grounded framework that jointly performs supply chain bottleneck prediction and faithful natural-language risk explanation by coupling a Temporal Graph Attention Network (TGAT) with a structured large language model (LLM) reasoning module. Using maritime hubs as a representative case study for global supply chain nodes, daily spatial graphs are constructed from Automatic Identification System (AIS) broadcasts, where inter-node interactions are modeled through attention-based message passing. The TGAT predictor captures spatiotemporal risk dynamics, while model-internal evidence -- including feature z-scores and attention-derived neighbor influence -- is transformed into structured prompts that constrain LLM reasoning to verifiable model outputs. To evaluate explanatory reliability, we introduce a directional-consistency validation protocol that quantitatively measures agreement between generated risk narratives and underlying statistical evidence. Experiments on six months of real-world logistics data demonstrate that the proposed framework outperforms baseline models, achieving a test AUC of 0.761, AP of 0.344, and recall of 0.504 under a strict chronological split while producing early warning explanations with 99.6% directional consistency. Results show that grounding LLM generation in graph-model evidence enables interpretable and auditable risk reporting without sacrificing predictive performance. The framework provides a practical pathway toward operationally deployable explainable AI for supply chain risk early warning and resilience management.
Mar 3, 2026

Beyond One-Size-Fits-All: Adaptive Subgraph Denoising for Zero-Shot Graph Learning with Large Language Models

Graph-based tasks in the zero-shot setting remain a significant challenge due to data scarcity and the inability of traditional Graph Neural Networks (GNNs) to generalize to unseen domains or label spaces. While recent advancements have transitioned toward leveraging Large Language Models (LLMs) as predictors to enhance GNNs, these methods often suffer from cross-modal alignment issues. A recent paradigm (i.e., Graph-R1) overcomes the aforementioned architectural dependencies by adopting a purely text-based format and utilizing LLM-based graph reasoning, showing improved zero-shot generalization. However, it employs a task-agnostic, one-size-fits-all subgraph extraction strategy, which inevitably introduces significant structural noise--irrelevant neighbors and edges--that distorts the LLMs' receptive field and leads to suboptimal predictions. To address this limitation, we introduce GraphSSR, a novel framework designed for adaptive subgraph extraction and denoising in zero-shot LLM-based graph reasoning. Specifically, we propose the SSR pipeline, which dynamically tailors subgraph extraction to specific contexts through a "Sample-Select-Reason" process, enabling the model to autonomously filter out task-irrelevant neighbors and overcome the one-size-fits-all issue. To internalize this capability, we develop SSR-SFT, a data synthesis strategy that generates high-quality SSR-style graph reasoning traces for supervised fine-tuning of LLMs. Furthermore, we propose SSR-RL, a two-stage reinforcement learning framework that explicitly regulates sampling and selection operations within the proposed SSR pipeline designed for adaptive subgraph denoising. By incorporating Authenticity-Reinforced and Denoising-Reinforced RL, we guide the model to achieve accurate predictions using parsimonious, denoised subgraphs for reasoning.
Mar 2, 2026

Let the Agent Search: Autonomous Exploration Beats Rigid Workflows in Temporal Question Answering

Temporal Knowledge Graph Question Answering (TKGQA) is challenging because it requires multi-hop reasoning under complex temporal constraints. Recent LLM-based approaches have improved semantic modeling for this task, but many still rely on fixed reasoning workflows or costly post-training, which can limit adaptability and make error recovery difficult. We show that enabling an off-the-shelf Large Language Model (LLM) to determine its next action is already effective in a zero-shot setting. Based on this insight, we propose AT2QA, an Autonomous and Training-free Agent for TKG Question Answering. AT2QA empowers the LLM to iteratively interact with the TKG via a generic search tool, inherently enabling autonomous exploration and dynamic self-correction during reasoning. To further elicit the LLM's potential for complex temporal reasoning, we introduce a training-free experience mining mechanism that distills a compact few-shot demonstration library from successful self-generated trajectories. AT2QA also yields a transparent audit trail for every prediction. Experiments on three challenging benchmarks -- MultiTQ, Timeline-CronQuestion, and Timeline-ICEWS-Actor -- show that AT2QA achieves new state-of-the-art performance, surpassing the strongest baselines by 10.7, 4.9, and 11.2 absolute points, respectively. Our code is available at https://github.com/AT2QA-Official-Code/AT2QA-Official-Code
Mar 2, 2026

GraphScout: Empowering Large Language Models with Intrinsic Exploration Ability for Agentic Graph Reasoning

Knowledge graphs provide structured and reliable information for many real-world applications, motivating increasing interest in combining large language models (LLMs) with graph-based retrieval to improve factual grounding. Recent Graph-based Retrieval-Augmented Generation (GraphRAG) methods therefore introduce iterative interaction between LLMs and knowledge graphs to enhance reasoning capability. However, existing approaches typically depend on manually designed guidance and interact with knowledge graphs through a limited set of predefined tools, which substantially constrains graph exploration. To address these limitations, we propose GraphScout, a training-centric agentic graph reasoning framework equipped with more flexible graph exploration tools. GraphScout enables models to autonomously interact with knowledge graphs to synthesize structured training data which are then used to post-train LLMs, thereby internalizing agentic graph reasoning ability without laborious manual annotation or task curation. Extensive experiments across five knowledge-graph domains show that a small model (e.g., Qwen3-4B) augmented with GraphScout outperforms baseline methods built on leading LLMs (e.g., Qwen-Max) by an average of 16.7% while requiring significantly fewer inference tokens. Moreover, GraphScout exhibits robust cross-domain transfer performance. Our code will be made publicly available~\footnote{https://github.com/Ying-Yuchen/_GraphScout_}.
Feb 28, 2026

Wireless Power Control Based on Large Language Models

This paper investigates the power control problem in wireless networks by repurposing pre-trained large language models (LLMs) as relational reasoning backbones. In hyper-connected interference environments, traditional optimization methods face high computational cost, while standard message passing neural networks suffer from aggregation bottlenecks that can obscure critical high-interference structures. In response, we propose PC-LLM, a physics-informed framework that augments a pre-trained LLM with an interference-aware attention bias. The proposed bias tuning mechanism injects the physical channel gain matrix directly into the self-attention scores, enabling explicit fusion of wireless topology with pre-trained relational priors without retraining the backbone from scratch. Extensive experiments demonstrate that PC-LLM consistently outperforms both traditional optimization methods and state-of-the-art graph neural network baselines, while exhibiting exceptional zero-shot generalization to unseen environments. We further observe that topology-relevant relational reasoning is concentrated in shallow layers, whereas deeper layers encode task-irrelevant semantic noise. Motivated by this finding, we develop a lightweight adaptation strategy that reduces model depth by 50%, significantly lowering inference cost while preserving state-of-the-art spectral efficiency.
Feb 27, 2026

Reviewing the Reviewer: Graph-Enhanced LLMs for E-commerce Appeal Adjudication

Hierarchical review workflows, where a second-tier reviewer (Checker) corrects first-tier (Maker) decisions, generate valuable correction signals that encode why initial judgments failed. However, learning from these signals is hindered by information asymmetry: corrections often depend on verification actions unavailable to Makers or automated systems. We address this challenge by introducing explicit action modeling as an inferential constraint that grounds reasoning in verifiable operations rather than unconstrained text generation. We propose the Evidence-Action-Factor-Decision (EAFD) schema, a minimal representation for adjudication reasoning that prevents hallucination through operational grounding and enables learning from correction signals via explicit conflict modeling. Building on this schema, we develop a conflict-aware graph reasoning framework that: (1) constructs EAFD graphs from historical cases capturing Maker-Checker disagreements, (2) aggregates them into a retrievable knowledge base, and (3) performs top-down deductive reasoning for new cases by projecting validated resolution paths from precedents. A distinctive capability is the Request More Information (RMI) outcome: when evidence is insufficient, the system identifies precisely which verification actions remain unexecuted and generates targeted information requests. We evaluate the framework in large-scale e-commerce seller appeal adjudication. While a standard LLM-only baseline achieves only 70.8% alignment with human experts, incorporating action modeling with RMI improves alignment to 87.5%. Augmenting this with the retrieval-based knowledge graph yields the best offline performance of 95.8%. Following online deployment, the framework maintains robust performance, achieving a 96.3% alignment rate in production, demonstrating its real-world effectiveness.
Feb 26, 2026

TCM-DiffRAG: Personalized Syndrome Differentiation Reasoning Method for Traditional Chinese Medicine based on Knowledge Graph and Chain of Thought

Background: Retrieval augmented generation (RAG) technology can empower large language models (LLMs) to generate more accurate, professional, and timely responses without fine tuning. However, due to the complex reasoning processes and substantial individual differences involved in traditional Chinese medicine (TCM) clinical diagnosis and treatment, traditional RAG methods often exhibit poor performance in this domain. Objective: To address the limitations of conventional RAG approaches in TCM applications, this study aims to develop an improved RAG framework tailored to the characteristics of TCM reasoning. Methods: We developed TCM-DiffRAG, an innovative RAG framework that integrates knowledge graphs (KG) with chains of thought (CoT). TCM-DiffRAG was evaluated on three distinctive TCM test datasets. Results: The experimental results demonstrated that TCM-DiffRAG achieved significant performance improvements over native LLMs. For example, the qwen-plus model achieved scores of 0.927, 0.361, and 0.038, which were significantly enhanced to 0.952, 0.788, and 0.356 with TCM-DiffRAG. The improvements were even more pronounced for non-Chinese LLMs. Additionally, TCM-DiffRAG outperformed directly supervised fine-tuned (SFT) LLMs and other benchmark RAG methods. Conclusions: TCM-DiffRAG shows that integrating structured TCM knowledge graphs with Chain of Thought based reasoning substantially improves performance in individualized diagnostic tasks. The joint use of universal and personalized knowledge graphs enables effective alignment between general knowledge and clinical reasoning. These results highlight the potential of reasoning-aware RAG frameworks for advancing LLM applications in traditional Chinese medicine.
Feb 25, 2026

Multi-hop Reasoning and Retrieval in Embedding Space: Leveraging Large Language Models with Knowledge

As large language models (LLMs) continue to grow in size, their abilities to tackle complex tasks have significantly improved. However, issues such as hallucination and the lack of up-to-date knowledge largely remain unresolved. Knowledge graphs (KGs), which serve as symbolic representations of real-world knowledge, offer a reliable source for enhancing reasoning. Integrating KG retrieval into LLMs can therefore strengthen their reasoning by providing dependable knowledge. Nevertheless, due to limited understanding of the underlying knowledge graph, LLMs may struggle with queries that have multiple interpretations. Additionally, the incompleteness and noise within knowledge graphs may result in retrieval failures. To address these challenges, we propose an embedding-based retrieval reasoning framework EMBRAG. In this approach, the model first generates multiple logical rules grounded in knowledge graphs based on the input query. These rules are then applied to reasoning in the embedding space, guided by the knowledge graph, ensuring more robust and accurate reasoning. A reranker model further interprets these rules and refines the results. Extensive experiments on two benchmark KGQA datasets demonstrate that our approach achieves the new state-of-the-art performance in KG reasoning tasks.
Feb 25, 2026

Federated Personal Knowledge Graph Completion with Lightweight Large Language Models for Personalized Recommendations

Personalized recommendation increasingly relies on private user data, motivating approaches that can adapt to individuals without centralizing their information. We present Federated Targeted Recommendations with Evolving Knowledge graphs and Language Models (FedTREK-LM), a framework that unifies lightweight large language models (LLMs), evolving personal knowledge graphs (PKGs), federated learning (FL), and Kahneman-Tversky Optimization to enable scalable, decentralized personalization. By prompting LLMs with structured PKGs, FedTREK-LM performs context-aware reasoning for personalized recommendation tasks such as movie and recipe suggestions. Across three lightweight Qwen3 models (0.6B, 1.7B, 4B), FedTREK-LM consistently and substantially outperforms state-of-the-art KG completion and federated recommendation baselines (HAKE, KBGAT, and FedKGRec), achieving more than a 4x improvement in F1-score on the movie and food benchmarks. Our results further show that real user data is critical for effective personalization, as synthetic data degrades performance by up to 46%. Overall, FedTREK-LM offers a practical paradigm for adaptive, LLM-powered personalization that generalizes across decentralized, evolving user PKGs.
Feb 25, 2026

HELIOS: Harmonizing Early Fusion, Late Fusion, and LLM Reasoning for Multi-Granular Table-Text Retrieval

Table-text retrieval aims to retrieve relevant tables and text to support open-domain question answering. Existing studies use either early or late fusion, but face limitations. Early fusion pre-aligns a table row with its associated passages, forming "stars," which often include irrelevant contexts and miss query-dependent relationships. Late fusion retrieves individual nodes, dynamically aligning them, but it risks missing relevant contexts. Both approaches also struggle with advanced reasoning tasks, such as column-wise aggregation and multi-hop reasoning. To address these issues, we propose HELIOS, which combines the strengths of both approaches. First, the edge-based bipartite subgraph retrieval identifies finer-grained edges between table segments and passages, effectively avoiding the inclusion of irrelevant contexts. Then, the query-relevant node expansion identifies the most promising nodes, dynamically retrieving relevant edges to grow the bipartite subgraph, minimizing the risk of missing important contexts. Lastly, the star-based LLM refinement performs logical inference at the star graph level rather than the bipartite subgraph, supporting advanced reasoning tasks. Experimental results show that HELIOS outperforms state-of-the-art models with a significant improvement up to 42.6% and 39.9% in recall and nDCG, respectively, on the OTT-QA benchmark.
Feb 25, 2026

Explore-on-Graph: Incentivizing Autonomous Exploration of Large Language Models on Knowledge Graphs with Path-refined Reward Modeling

The reasoning process of Large Language Models (LLMs) is often plagued by hallucinations and missing facts in question-answering tasks. A promising solution is to ground LLMs' answers in verifiable knowledge sources, such as Knowledge Graphs (KGs). Prevailing KG-enhanced methods typically constrained LLM reasoning either by enforcing rules during generation or by imitating paths from a fixed set of demonstrations. However, they naturally confined the reasoning patterns of LLMs within the scope of prior experience or fine-tuning data, limiting their generalizability to out-of-distribution graph reasoning problems. To tackle this problem, in this paper, we propose Explore-on-Graph (EoG), a novel framework that encourages LLMs to autonomously explore a more diverse reasoning space on KGs. To incentivize exploration and discovery of novel reasoning paths, we propose to introduce reinforcement learning during training, whose reward is the correctness of the reasoning paths' final answers. To enhance the efficiency and meaningfulness of the exploration, we propose to incorporate path information as additional reward signals to refine the exploration process and reduce futile efforts. Extensive experiments on five KGQA benchmark datasets demonstrate that, to the best of our knowledge, our method achieves state-of-the-art performance, outperforming not only open-source but also even closed-source LLMs.
Feb 25, 2026

PPCR-IM: A System for Multi-layer DAG-based Public Policy Consequence Reasoning and Social Indicator Mapping

Public policy decisions are typically justified using a narrow set of headline indicators, leaving many downstream social impacts unstructured and difficult to compare across policies. We propose PPCR-IM, a system for multi-layer DAG-based consequence reasoning and social indicator mapping that addresses this gap. Given a policy description and its context, PPCR-IM uses an LLM-driven, layer-wise generator to construct a directed acyclic graph of intermediate consequences, allowing child nodes to have multiple parents to capture joint influences. A mapping module then aligns these nodes to a fixed indicator set and assigns one of three qualitative impact directions: increase, decrease, or ambiguous change. For each policy episode, the system outputs a structured record containing the DAG, indicator mappings, and three evaluation measures: an expected-indicator coverage score, a discovery rate for overlooked but relevant indicators, and a relative focus ratio comparing the systems coverage to that of the government. PPCR-IM is available both as an online demo and as a configurable XLSX-to-JSON batch pipeline.
Feb 24, 2026

Shared Nature, Unique Nurture: PRISM for Pluralistic Reasoning via In-context Structure Modeling

Large Language Models (LLMs) are converging towards a singular Artificial Hivemind, where shared Nature (pre-training priors) result in a profound collapse of distributional diversity, limiting the distinct perspectives necessary for creative exploration and scientific discovery. To address this, we propose to equip models with inference-time Nurture (individualized epistemic trajectories) using Epistemic Evolution paradigm, progressing through explore, internalize, and express. We instantiate this via PRISM (Pluralistic Reasoning via In-context Structure Modeling), a model-agnostic system that augments LLM with dynamic On-the-fly Epistemic Graphs. On three creativity benchmarks, PRISM achieves state-of-the-art novelty and significantly expands distributional diversity. Moreover, we evaluate the real-world utility via a challenging rare-disease diagnosis benchmark. Results demonstrate that PRISM successfully uncovers correct long-tail diagnoses that standard LLM miss, confirming that its divergence stems from meaningful exploration rather than incoherent noise. Overall, this work establishes a new paradigm for Pluralistic AI, moving beyond monolithic consensus toward a diverse ecosystem of unique cognitive individuals capable of collective, multi-perspective discovery.
Feb 24, 2026

HELP: HyperNode Expansion and Logical Path-Guided Evidence Localization for Accurate and Efficient GraphRAG

Large Language Models (LLMs) often struggle with inherent knowledge boundaries and hallucinations, limiting their reliability in knowledge-intensive tasks. While Retrieval-Augmented Generation (RAG) mitigates these issues, it frequently overlooks structural interdependencies essential for multi-hop reasoning. Graph-based RAG approaches attempt to bridge this gap, yet they typically face trade-offs between accuracy and efficiency due to challenges such as costly graph traversals and semantic noise in LLM-generated summaries. In this paper, we propose HyperNode Expansion and Logical Path-Guided Evidence Localization strategies for GraphRAG (HELP), a novel framework designed to balance accuracy with practical efficiency through two core strategies: 1) HyperNode Expansion, which iteratively chains knowledge triplets into coherent reasoning paths abstracted as HyperNodes to capture complex structural dependencies and ensure retrieval accuracy; and 2) Logical Path-Guided Evidence Localization, which leverages precomputed graph-text correlations to map these paths directly to the corpus for superior efficiency. HELP avoids expensive random walks and semantic distortion, preserving knowledge integrity while drastically reducing retrieval latency. Extensive experiments demonstrate that HELP achieves competitive performance across multiple simple and multi-hop QA benchmarks and up to a 28.8×\times speedup over leading Graph-based RAG baselines.
Feb 22, 2026

Topology of Reasoning: Retrieved Cell Complex-Augmented Generation for Textual Graph Question Answering

Retrieval-Augmented Generation (RAG) enhances the reasoning ability of Large Language Models (LLMs) by dynamically integrating external knowledge, thereby mitigating hallucinations and strengthening contextual grounding for structured data such as graphs. Nevertheless, most existing RAG variants for textual graphs concentrate on low-dimensional structures -- treating nodes as entities (0-dimensional) and edges or paths as pairwise or sequential relations (1-dimensional), but overlook cycles, which are crucial for reasoning over relational loops. Such cycles often arise in questions requiring closed-loop inference about similar objects or relative positions. This limitation often results in incomplete contextual grounding and restricted reasoning capability. In this work, we propose Topology-enhanced Retrieval-Augmented Generation (TopoRAG), a novel framework for textual graph question answering that effectively captures higher-dimensional topological and relational dependencies. Specifically, TopoRAG first lifts textual graphs into cellular complexes to model multi-dimensional topological structures. Leveraging these lifted representations, a topology-aware subcomplex retrieval mechanism is proposed to extract cellular complexes relevant to the input query, providing compact and informative topological context. Finally, a multi-dimensional topological reasoning mechanism operates over these complexes to propagate relational information and guide LLMs in performing structured, logic-aware inference. Empirical evaluations demonstrate that our method consistently surpasses existing baselines across diverse textual graph tasks.
Feb 20, 2026

GraphSkill: Documentation-Guided Hierarchical Retrieval-Augmented Coding for Complex Graph Reasoning

The growing demand for automated graph algorithm reasoning has attracted increasing attention in the large language model (LLM) community. Recent LLM-based graph reasoning methods typically decouple task descriptions from graph data, generate executable code augmented by retrieval from technical documentation, and refine the code through debugging. However, we identify two key limitations in existing approaches: (i) they treat technical documentation as flat text collections and ignore its hierarchical structure, leading to noisy retrieval that degrades code generation quality; and (ii) their debugging mechanisms focus primarily on runtime errors, yet ignore more critical logical errors. To address them, we propose {\method}, an agentic hierarchical retrieval-augmented coding framework that exploits the document hierarchy through top-down traversal and early pruning, together with a self-debugging coding agent that iteratively refines code using automatically generated small-scale test cases. To enable comprehensive evaluation of complex graph reasoning, we introduce a new dataset, {\dataset}, covering small-scale, large-scale, and composite graph reasoning tasks. Extensive experiments demonstrate that our method achieves higher task accuracy and lower inference cost compared to baselines\footnote{The code is available at blue{https://github.com/FairyFali/GraphSkill}.}.
Feb 19, 2026

GraphThinker: Reinforcing Temporally Grounded Video Reasoning with Event Graph Thinking

Video reasoning requires a fine-grained understanding of the temporal dependencies and event-level relations between objects and events in videos. Current Multimodal Large Language Models (MLLMs) are prone to severe temporal hallucinations in video reasoning. An underlying cause of these hallucinations is weak visual-temporal grounding and the lack of explicit structure for modelling event relations. Models often rely on auxiliary text, such as dense captions, rather than explicitly anchoring their reasoning in actual visual evidence. However, these textual representations are inherently unstructured and fail to provide explicit causal constraints needed to guide the model's reasoning. In this work, we propose GraphThinker, a reinforcement finetuning method that constructs a structured event representation of a video and enforces visual grounding to jointly reduce reasoning hallucinations. Specifically, we employ an MLLM to construct an Event-based Video Scene Graph (EVSG) that captures both intra- and inter-event relations, guiding a structured video reasoning process. Moreover, we address the weak grounding issue by introducing a novel visual attention reward during reinforcement finetuning that encourages the model to actively attend to reliable visual cues. On the RexTime dataset, GraphThinker achieves an over 4% improvement in IoU=0.3 for moment localisation. On the VidHalluc dataset, GraphThinker achieves a 9.8% improvement in reducing temporal sequence hallucination and a 7.6% gain in Binary QA in reducing action hallucination, compared to the state-of-the-art methods.
Feb 18, 2026

LLM-WikiRace Benchmark: How Far Can LLMs Plan over Real-World Knowledge Graphs?

We introduce LLM-Wikirace, a benchmark for evaluating planning, reasoning, and world knowledge in large language models (LLMs). In LLM-Wikirace, models must efficiently navigate Wikipedia hyperlinks step by step to reach a target page from a given source, requiring look-ahead planning and the ability to reason about how concepts are connected in the real world. We evaluate a broad set of open- and closed-source models, including Gemini-3, GPT-5, and Claude Opus 4.5, which achieve the strongest results on the easy level of the task and demonstrate superhuman performance. Despite this, performance drops sharply on hard difficulty: the best-performing model, Gemini-3, succeeds in only 23% of hard games, highlighting substantial remaining challenges for frontier models. Our analysis shows that world knowledge is a necessary ingredient for success, but only up to a point, beyond this threshold, planning and long-horizon reasoning capabilities become the dominant factors. Trajectory-level analysis further reveals that even the strongest models struggle to replan after failure, frequently entering loops rather than recovering. LLM-Wikirace is a simple benchmark that reveals clear limitations in current reasoning systems, offering an open arena where planning-capable LLMs still have much to prove. Our code and leaderboard available at https:/llmwikirace.github.io.
Feb 16, 2026

Panini: Continual Learning in Token Space via Structured Memory

Language models are increasingly used to reason over content they were not trained on, such as new documents, evolving knowledge, and user-specific data. A common approach is retrieval-augmented generation (RAG), which stores verbatim documents externally (as chunks) and retrieves only a relevant subset at inference time for an LLM to reason over. However, this results in inefficient usage of test-time compute (LLM repeatedly reasons over the same documents); moreover, chunk retrieval can inject irrelevant context that increases unsupported generation. We propose a human-like non-parametric continual learning framework, where the base model remains fixed, and learning occurs by integrating each new experience into an external semantic memory state that accumulates and consolidates itself continually. We present Panini, which realizes this by representing documents as Generative Semantic Workspaces (GSW) -- an entity- and event-aware network of question-answer (QA) pairs, sufficient for an LLM to reconstruct the experienced situations and mine latent knowledge via reasoning-grounded inference chains on the network. Given a query, Panini only traverses the continually-updated GSW (not the verbatim documents or chunks), and retrieves the most likely inference chains. Across six QA benchmarks, Panini achieves the highest average performance, 5%-7% higher than other competitive baselines, while using 2-30x fewer answer-context tokens, supports fully open-source pipelines, and reduces unsupported answers on curated unanswerable queries. The results show that efficient and accurate structuring of experiences at write time -- as achieved by the GSW framework -- yields both efficiency and reliability gains at read time. Code is available at https://github.com/roychowdhuryresearch/gsw-memory.
Feb 4, 2026

CausalRAG2: Hierarchical Causal Knowledge Graph Design for RAG

Retrieval augmented generation (RAG) has enhanced large language models by enabling access to external knowledge, with graph-based RAG emerging as a powerful paradigm for structured retrieval and reasoning. However, existing graph-based methods often over-rely on entity-centric node matching and lack explicit causal modeling, leading to unfaithful or spurious answers. Prior attempts to incorporate causality are typically limited to local or single-document contexts and also suffer from information isolation that arises from modular graph structures, which hinders scalability and cross-module causal reasoning. To address these challenges, we propose CausalRAG2, a framework that rethinks knowledge organization for graph-based RAG through causal gating across hierarchical modules. CausalRAG2 explicitly models causal relationships to suppress spurious correlations while enabling scalable reasoning over large-scale knowledge graphs. We also introduce HolisQA, a benchmark for holistic comprehension beyond entity-centric matching. Extensive experiments demonstrate that CausalRAG2 consistently outperforms competitive graph-based RAG baselines across multiple datasets and evaluation metrics. Our work establishes a principled foundation for structured, scalable, and causally grounded RAG systems. Our code and HolisQA benchmark are available at https://github.com/Pwnb/CausalRAG2.
Jan 28, 2026

UltRAG: a Universal Simple Scalable Recipe for Knowledge Graph RAG

Large language models (LLMs) frequently generate confident yet factually incorrect content when used for language generation (a phenomenon often known as hallucination). Retrieval augmented generation (RAG) tries to reduce factual errors by identifying information in a knowledge corpus and putting it in the context window of the model. While this approach is well-established for document-structured data, it is non-trivial to adapt it for Knowledge Graphs (KGs), especially for queries that require multi-node/multi-hop reasoning on graphs. We introduce UltRAG, a training-free KG-RAG recipe that combines LLM query generation, a fully inductive neural query executor, and LLM arbitration. This off-the-shelf composition achieves state-of-the-art results on Knowledge Graph Question Answering (KGQA) tasks without retraining the LLM or executor, while enabling language models to interface with Wikidata-scale graphs (116M entities, 1.6B relations) at comparable or lower costs. Our ablation studies indicate that these gains come from the full system design rather than from any single component.
Jan 24, 2026

LLMs Think with DAGs: Probing the Latent Graph Structure of Reasoning

Large language models often externalize reasoning as linear chains, but many reasoning problems can be more naturally modeled as directed acyclic graphs (DAGs), where intermediate conclusions branch, merge, and are reused. Whether such graph structure is reflected in model internals remains unclear. We introduce Reasoning DAG Probing to answer this question. We formalize each premise, intermediate conclusion, and final answer as a DAG node, and train lightweight probes to predict node depth, pairwise distance, and adjacency from LLM hidden states. Across logical, mathematical, and code reasoning benchmarks, we find that DAG structure is meaningfully encoded in LLM representations: it peaks in intermediate layers, with later layers preferentially recover deeper nodes and longer-range reasoning dependencies, and becomes stronger with model scale. DAG structure also progressively emerges during autoregressive generation in ways that anticipate answer correctness, while steering activations toward the ground-truth DAG structure can convert some originally incorrect generations into correct ones. These results suggest that LLM reasoning is not purely sequential, but reflects measurable latent graph structure.
Jan 24, 2026

GraphDancer: Training LLMs to Explore and Reason over Graphs via Curriculum Reinforcement Learning

Large language models (LLMs) increasingly rely on external knowledge to improve factuality, yet many knowledge sources on the Web, such as scholarly indexes and product catalogs, are organized as heterogeneous graphs. Reasoning over such graph-structured knowledge poses two key challenges: (1) navigating structured, schema-defined relations requires precise function calls beyond similarity-based retrieval, and (2) answering complex questions often demands multi-hop evidence aggregation through iterative information seeking. We study how LLMs can learn these interaction capabilities and transfer them to unseen domains. We propose GraphDancer, a reinforcement learning (RL) framework that teaches LLMs to navigate graphs by interleaving reasoning and function execution. To improve RL for moderate-sized LLMs, we introduce a graph-aware curriculum that schedules training by the structural difficulty of questions using an easy-to-hard biased sampler. We evaluate GraphDancer on the multi-domain GRBench benchmark, training only on Academic and Biomedical graphs. Testing covers held-out questions from these domains as well as unseen E-commerce, Literature, and Legal graphs. With either Qwen2.5-3B-Instruct or Qwen3-14B as the backbone, GraphDancer outperforms graph-agent baselines using the same backbone across all evaluation domains. These results indicate that the learned graph exploration and reasoning capabilities transfer across domains. On average across unseen domains, GraphDancer with a 14B backbone also outperforms baselines powered by the closed-source models GPT-4.1-mini and GPT-5-nano. Trajectory analyses further show that GraphDancer retrieves answer-bearing evidence more often and achieves higher accuracy when such evidence is found, while substantially reducing invalid-protocol outcomes.
Jan 11, 2026

DAGGER: Distractor-Aware Graph Generation for Executable Reasoning in Math Problems

Chain-of-Thought (CoT) prompting is widely adopted for mathematical problem solving, including in low-resource languages, yet its behavior under irrelevant context remains underexplored. To systematically study this challenge, we introduce DISTRACTMATH-BN, a Bangla benchmark that augments MGSM and MSVAMP with semantically coherent but computationally irrelevant information. Evaluating seven models ranging from 3B to 12B parameters, we observe substantial performance degradation under distractors: standard models drop by up to 41 points, while reasoning-specialized models decline by 14 to 20 points despite consuming five times more tokens. We propose †DAGGER, which reformulates mathematical problem solving as executable computational graph generation with explicit modeling of distractor nodes. Fine-tuning Gemma-3 models using supervised fine-tuning followed by Group Relative Policy Optimization achieves comparable weighted accuracy on augmented benchmarks while using 89 percent fewer tokens than reasoning models. Importantly, this robustness emerges without explicit training on distractor-augmented examples. Our results suggest that enforcing structured intermediate representations improves robustness and inference efficiency in mathematical reasoning compared to free-form approaches, particularly in noisy, low-resource settings.
Nov 10, 2025

SpatialThinker: Reinforcing Scene Graph-Grounded Spatial Reasoning via Dense Rewards

Multimodal large language models (MLLMs) have achieved remarkable progress in vision-language tasks, but continue to struggle with spatial reasoning. Existing spatial MLLMs rely on large-scale datasets, explicit 3D inputs, architecture-specific modifications, or sparse Reinforcement Learning (RL) methods that provide insufficient guidance for spatially-grounded reasoning. We introduce SpatialThinker. To our knowledge, it is the first MLLM unifying Scene Graph Generation (SGG) and visual reasoning in a single pass via online RL. The model simulates human-like spatial perception by constructing a mental scene graph of task-relevant objects and relations, and reasoning toward an answer via dense spatial rewards. Our contributions are threefold: (1) SGG-grounded reasoning: integrating SGG directly within the reasoning chain rather than as a disjoint preprocessing step; (2) STVQA-7K: a high-quality spatial VQA training dataset via a scalable synthesis pipeline; and (3) a dense spatial reward design that enforces structured grounding during RL and generalizes to improve broad visual perception. SpatialThinker-7B achieves 3.6×\times larger gains over SFT and 1.7×1.7\times better in- and out-of-distribution generalization than sparse RL. Trained on only 7K samples, SpatialThinker-7B matches GPT-5 and outperforms GPT-4o, while SpatialThinker-30B surpasses both GPT-5 and Claude 4 Sonnet on average across 14 spatial and real-world benchmarks, demonstrating that structured spatial grounding with reward-aligned reasoning enables robust spatial understanding with limited data.
Nov 6, 2025

KGFR: A Foundation Retriever for Generalized Knowledge Graph Question Answering

Large language models (LLMs) excel at reasoning but struggle with knowledge-intensive questions due to limited context and parametric knowledge. However, existing methods that rely on finetuned LLMs or GNN retrievers are limited by dataset-specific tuning and scalability on large or unseen graphs. We propose the LLM-KGFR collaborative framework, where an LLM works with a structured retriever, the Knowledge Graph Foundation Retriever (KGFR). KGFR encodes relations using LLM-generated descriptions and initializes entities based on their roles in the question, enabling zero-shot generalization to unseen KGs. To handle large graphs efficiently, it employs Asymmetric Progressive Propagation (APP)- a stepwise expansion that selectively limits high-degree nodes while retaining informative paths. Through node-, edge-, and path-level interfaces, the LLM iteratively requests candidate answers, supporting facts, and reasoning paths, forming a controllable reasoning loop. Experiments demonstrate that LLM-KGFR achieves strong performance while maintaining scalability and generalization, providing a practical solution for KG-augmented reasoning.
Feb 20, 2025

Learning to Retrieve and Reason on Knowledge Graph through Active Self-Reflection

Extensive research has investigated the integration of large language models (LLMs) with knowledge graphs to enhance the reasoning process. However, understanding how models perform reasoning utilizing structured graph knowledge remains underexplored. Most existing approaches rely on LLMs or retrievers to make binary judgments regarding the utilization of knowledge, which is too coarse. Meanwhile, there is still a lack of feedback mechanisms for reflection and control throughout the entire reasoning path. This paper proposes an Active self-Reflection framework for knowledge Graph reasoning (ArG), introducing for the first time an end-to-end training approach to achieve iterative reasoning grounded on structured graphs. Within the framework, the model leverages special tokens to actively control the reasoning process, achieving on-demand retrieval and multi-dimensional, finer-grained knowledge evaluation. The reasoning paths generated by the model exhibit high interpretability, enabling deeper exploration of the model's understanding of structured knowledge. Ultimately, the proposed model achieves outstanding results compared to existing baselines in knowledge graph reasoning tasks.