Agricultural Image Analysis

Large Language Models (LLMs) are being rapidly adopted in agricultural imaging applications, ranging from crop interpretation to synthetic field image generation. However, these models frequently exhibit hallucinations outputs that appear confident yet deviate from biological or environmental reality potentially leading to misinformed agronomic insights. This study investigates such hallucinations in two complementary directions: image-to-text, where LLMs interpret crop or field imagery to describe conditions such as biotic and abiotic stresses, and text-to-image, where models generate synthetic agricultural scenes based on descriptive prompts. We examine errors involving biological inconsistency, contextual inaccuracy, and agronomic implausibility, evaluating the outputs under domain-informed criteria across multiple imaging modalities. Our analysis identifies recurring hallucination patterns within both interpretive and generative tasks. In image interpretation, LLMs (e.g., Gemma, LLAVA, Qwen, and MiniCPM) achieved modest zero-shot accuracy (63 to 75 percent), whereas few-shot prompting improved performance up to 86.8 percent, exhibiting false detections and missed infections, indicating residual hallucination effects. In text-to-image tasks, advanced models such as GPT-5 and Gemini 2.5 Flash generate up to 91 percent biologically inconsistent scenes under relaxed prompt constraints, revealing fundamental weaknesses in current LLMs. This systematic assessment of visual reasoning and generation offers critical insights toward enhancing the reliability and trustworthiness of LLM-based agricultural imaging platforms.

In greenhouse tomato production, automated harvesting requires accurate detection of ripe tomatoes, ripeness classification, and precise picking-point localization for robotic end-effectors. This paper proposes YOLO26-RipeLoc Lite, a lightweight deep learning architecture based on YOLO26 for simultaneous detection, ripeness classification, and center-point localization of greenhouse tomatoes. The model introduces three modifications: (1) a Lightweight Feature Pyramid Network (LFPN) with depthwise separable convolutions for efficient multi-scale fusion, (2) a Ripeness-Aware Attention Module (RAAM) with dual pooling and a learnable ripeness bias vector for enhanced color-texture discrimination, and (3) a Compact Detection Head (CDH) with shared convolutions and an integrated center-point regression branch for direct grasp planning. The model is evaluated on a custom dataset of 1,500 images with 6,227 instances (3,566 ripe, 2,661 unripe) from the SILAL greenhouse, Abu Dhabi, UAE. YOLO26-RipeLoc Lite achieves [email protected] of 92.9% (95.2% ripe, 90.6% unripe) with the highest precision (95.2%) among all evaluated architectures using only 2.38M parameters. Post-training BatchNorm pruning at 30% reduces parameters to ~1.8M with negligible accuracy loss. Ablation studies confirm that greenhouse-aware HSV augmentation provides the largest improvement (+2.02 pp mAP@50), backbone freezing achieves peak precision (93.8%), and 3-phase progressive unfreezing yields the best localization quality (mAP@50:95 of 64.6%). Comparisons with YOLOv8n/s, YOLO11n/s, YOLO12n/s, and YOLO26s confirm superior accuracy-efficiency: 2.9 pp higher precision than YOLO12n with 7.0% fewer parameters and integrated center-point localization for robotic end-effector guidance.

Cluster closure, defined as the progressive filling of gaps between the berries in a grape bunch, is a key trait in vineyard management, impacting disease risk. However, traditional visual scoring methods are labor-intensive, subjective, and lack temporal resolution. Existing datasets rarely support fine-grained berry-level analysis, limiting the development of robust deep learning models. In this work, we present ViViD-5k, a large-scale in-field Vineyard Vision Dataset containing 5,000 images with dense annotations, including over 648,000 berry centroids and cluster segmentation masks spanning 13 grape varieties. Building on this dataset, we introduce GrapeSAM, a two-stage visual pipeline that combines point-based berry localization with prompt-based segmentation using Segment Anything, followed by transformer-based cluster segmentation. The pipeline enables automated, in-field estimation of cluster closure with minimal supervision. Quantitative results demonstrate strong segmentation and counting accuracy across diverse conditions, while visualizations confirm robustness on both in-domain and out-of-domain samples. This work provides a scalable and objective alternative to manual compactness scoring and supports high-throughput grape phenotyping with enhanced spatial detail.

Visual grounding, the task of localizing objects described by natural-language expressions, is a foundational capability for agricultural AI systems, enabling applications such as selective weeding, disease monitoring, and targeted harvesting. Reliable evaluation of agricultural visual grounding remains challenging because agricultural targets are often small, repetitive, occluded, or irregularly shaped, and instructions may refer to one, many, or no objects in an image. Evaluating this capability therefore requires jointly testing localization accuracy, target-set completeness, and existence-aware abstention. To address these challenges, we introduce \textbf{AgroVG}, a multi-source benchmark that formulates agricultural grounding as generalized set prediction: given an image and a referring expression, a model must return all matching target instances or abstain when no target is present. AgroVG contains 10{,}071 annotation-grounded image-query pairs from ten source datasets across six target families: crop/weed, fruit, wheat head, pest, plant disease, and tree canopy. It supports bounding-box grounding (T1) across all six families and instance-mask grounding (T2) on sources with reliable instance-level pixel annotations, with queries covering single-target, multi-target, and target-absent regimes. AgroVG further provides task-specific protocols for box-set matching and query-level mask coverage. Zero-shot evaluation of 26 model configurations spanning closed-source MLLMs, open-source VLMs, and specialized grounding systems reveals persistent gaps: the best multi-target Set-$F_1$ reaches only 0.35, and the best positive-query mask success rate at [email protected] remains below 0.17. Data and code are available at https://anonymous.4open.science/r/AgroVG-5172/ .

Accurate estimation of wheat spike volume is important for yield component analysis and stress resilience assessment, yet field-based measurement remains challenging. Active 3D sensing methods such as Light Detection and Ranging (LiDAR) or time-of-flight (ToF) are sensitive to plant motion or poorly suited to outdoor conditions, while 3D reconstructions are computationally expensive. Direct 2D image processing would offer computational advantages, but image-based models lack explicit geometric information. We therefore propose a hybrid 2D-3D approach with knowledge distillation during training while enabling efficient image-only inference. First, we train a rigid-invariant point cloud network using distance-based histogram features to obtain pose-robust geometric representations. We then combine the 3D model with a proposed multi-view image-based regulated Transformer (RT) in an ensemble architecture. Finally, we distill the ensemble knowledge into a purely image-based student model using either feature-based or label-based distillation. The two distilled RTs reduce the mean absolute error (MAE) from 654.31 mm$^3$ of the non-distilled RT to 639.93 mm$^3$ and 644.62 mm$^3$, and increase correlation from 0.76 to 0.77 and 0.82, respectively. At the same time, inference time is reduced from 160 ms to 1.4 ms per spike. Distillation further mitigates volume-dependent bias and reshapes the latent representation of the image model toward a geometry-aware shape. Our results demonstrate that 3D-informed training of a 2D Transformer allows for scalable and efficient spike volume estimation for high-throughput field phenotyping.

Fine-grained fruit classification is a critical yet challenging task in agricultural computer vision, primarily hindered by a severe shortage of high-quality datasets and the high visual similarity between classes. To address these challenges, we first constructed a comprehensive dataset comprising 306 fruit categories with 116,233 samples. Moreover, we propose FruitEnsemble, a practical two-stage dynamic inference framework designed to overcome the generalization limitations of static single-model architectures. In the first stage, FruitEnsemble employs a validation-calibrated weighted ensemble of heterogeneous backbones to generate a robust Top-3 candidate pool. To tackle difficult samples, we introduce an expert arbitration mechanism: when ensemble confidence falls below 0.6, a multimodal large language model (MLLM) is triggered to perform rigorous visual verification by integrating external botanical descriptions using Chain-of-Thought (CoT) reasoning. Furthermore, we optimized the training pipeline with a hard sample-aware joint loss. Extensive experiments demonstrate that FruitEnsemble achieves a classification accuracy of 70.49% and outperforms existing state-of-the-art models. Our framework provides an efficient, deployment-oriented solution for real-world agricultural visual sorting and quality inspection tasks.

Accurate estimation of plant skeletal structures (e.g., branching structures) from images is essential for smart agriculture and plant science. Unlike human skeletons with fixed topology, plant skeleton estimation presents a unique challenge, i.e., estimating arbitrary tree graphs from images. To address this problem, we introduce PlantPose, a universal plant skeleton estimator via tree-constrained graph generation. PlantPose combines learning-based graph generation with traditional graph algorithms to enforce tree constraints during the training loop. To enhance the model's generalization capability, we curate a large and diverse dataset comprising real-world and synthetic plant images, along with simplified representations (e.g., sketches and abstract drawings). This dataset enables the generalized model to adapt to diverse input styles and categories of plant images while preserving topological consistency. Our approach demonstrates robust and accurate plant skeleton estimation across multiple domains, including previously unseen out-of-domain scenarios. Further analyses highlight the method's strengths and limitations in handling complex, heterogeneous data distributions. All implementations and datasets are available at https://github.com/huntorochi/PlantPose/.

Plant disease diagnosis is critical for food security, yet training disease-recognition models that generalize across crops, pathogens, and field conditions remains challenging because labeled disease images are far less abundant and standardized than data for other biotic stresses such as insects or weeds. Frontier vision-language models offer new opportunities through improved visual reasoning, but they still struggle with fine-grained disease identification due to the lack of structured, crop-specific symptom knowledge. To address this gap, we curate the largest plant disease image--symptom dataset to date, covering 335 crops, 1{,}251 disease classes, and approximately 839K images, designed to support training-free, agentic disease prediction. A scalable automated pipeline generates source-grounded symptom descriptions in which each claim is linked to a verbatim web quote; domain experts validate sampled crops and reconcile disease-name variants across sources. As a baseline, we introduce an autonomous visual reasoning agent that identifies anatomical context, narrows candidate diseases using symptom knowledge, sequentially compares reference images, and produces a fully explainable reasoning trace. Incorporating symptom knowledge improves accuracy by 16.2 percentage points on average at the full reference budget, with consistent gains across all four evaluation crops. Because the framework only requires crop-specific reference images and symptom knowledge, it can be extended to new crops without retraining, while the agentic baseline can directly benefit from future improvements in foundation model capabilities. Dataset and code are available at:https://sage-dataset.github.io/.

Pest-induced crop losses pose a major threat to global food security and sustainable agricultural development. While recent advances in Multimodal Large Language Models (MLLMs) have shown strong potential for visual understanding and smart agriculture, their direct application to pest recognition remains limited due to the domain's unique challenges such as high inter-species complexity, intra-species variability, and the scarcity of expert-annotated data. In this work, we introduce Pest-Thinker, a knowledge-driven reinforcement learning (RL) framework that enables MLLMs to reason over fine-grained pest morphology. We first construct two high-definition pest benchmarks, QFSD and AgriInsect, comprising diverse species and expert-annotated morphological traits. Leveraging these datasets, we synthesize Chain-of-Thought (CoT) reasoning trajectories to facilitate structured learning of pest-specific visual cues through Supervised Fine-Tuning (SFT). Subsequently, we employ Group Relative Policy Optimization (GRPO) with a novel feature reward that guides the model to focus on observable morphological evidence, assessed by an LLM-as-a-Judge strategy. Extensive experiments demonstrate that Pest-Thinker substantially improves both in-domain and out-of-domain morphological understanding, marking a step toward expert-level visual reasoning for intelligent agricultural pest analysis. The datasets and source code are available upon acceptance.

Rising global food demand and growing climate pressure increase the need for sustainable, precise agricultural practices. Automated, individualized plant treatment relies on fine-grained visual analysis, yet leaf-level segmentation remains underexplored despite its value for assessing crop health, growth dynamics, yield potential and localized stress symptoms. Progress is limited by a lack of dedicated datasets, especially regarding species coverage, and by the absence of systematic evaluations of modern instance-segmentation architectures for this task. We address these gaps by surveying current data and identifying four suitable, publicly available leaf-segmentation datasets. Using them, we compare one-stage, two-stage and Transformer-based detectors and identify a YOLO26 model configuration to provide the best trade-off for real-world precision-agriculture tasks. Extensive cross-domain generalization experiments reveal substantial performance drops across plant species and recording setups, especially for models trained solely on laboratory data. To strengthen data availability, we introduce a new benchmark dataset with leaf-level masks for 23 plant species, created via semi-automatic annotation of selected CropAndWeed images. A model trained on all four existing datasets achieves a mean mAP50-95 of 83.9% across their corresponding test sets and 40.2% on our new benchmark, demonstrating improved generalization and highlighting the need for diverse leaf-segmentation datasets in robust precision agriculture.

High-throughput plant phenotyping, the quantitative measurement of observable plant traits, is critical for modern breeding but remains constrained by a "phenotyping bottleneck," where manual data collection is labor-intensive and prone to observer bias. Conventional closed-set computer vision systems fail to address this challenge, as they require extensive species-specific annotation and lack the flexibility to handle diverse breeding populations. To bridge this gap, we present CropVLM, a Vision-Language Model (VLM) adapted for the agricultural domain via Domain-Specific Semantic Alignment (DSSA). Trained on 52,987 manually selected image-caption pairs covering 37 species in natural field conditions, CropVLM effectively maps agronomic terminology to fine-grained visual features. We further introduce the Hybrid Open-Set Localization Network (HOS-Net), an architecture that integrates CropVLM to enable the detection of novel crops solely from natural language descriptions without retraining. By eliminating the reliance on species-specific training data, CropVLM provides a scalable solution for high-throughput phenotyping, accelerating genetic gain and facilitating large-scale biodiversity research essential for sustainable agriculture. The trained model weights and complete pipeline implementation are publicly available at: https://github.com/boudiafA/CropVLM. In comprehensive evaluations, CropVLM achieves 72.51% zero-shot classification accuracy, outperforming seven CLIP-style baselines. Our detection pipeline demonstrates superior zero-shot generalization to novel species, achieving 49.17 AP50 on our CVTCropDet benchmark and 50.73 AP50 on tropical fruit species, compared to 34.89 and 48.58 for the next-best method, respectively.

Foundation-model pipelines for individual-level livestock monitoring -- combining open-vocabulary detection, promptable video segmentation, and self-supervised visual embeddings -- have raised the accuracy ceiling of precision livestock farming (PLF), but their GPU memory budgets exceed the envelope of commodity edge accelerators. To close this gap, the 446M-parameter Perception Encoder (PE-ViT-L+) backbone of SAM 3 is distilled into a 40.66M-parameter multi-scale student through three mechanisms: a Feature Pyramid Network student encoder built on TinyViT-21M-512, a four-term direction-then-scale distillation loss, and backbone-substitution inference with sliding-window session pruning that bounds streaming GPU memory growth. The DINOv3 family includes a pre-distilled ViT-S/16 variant (21.6M parameters) released alongside a 6716M-parameter ViT-7B teacher; the ViT-S (21M) variant is adopted as the per-individual embedder. On the Edinburgh Pig dataset, the compressed pipeline reaches 92.29% MOTA and 96.15% IDF1 against the SAM 3 teacher (1.68- and 0.84-percentage-point losses), achieves a 7.77-fold reduction in system-level parameters and a 3.01-fold reduction in peak VRAM (19.52GB -> 6.49GB), and reaches 97.34% top-1 accuracy with 91.67% macro-F1 on nine-class pig behaviour classification. The pipeline fits inside an NVIDIA Jetson Orin NX 16GB envelope with 4.9GB of headroom, supporting a proposed -- but not yet empirically validated -- on-device embedding-pool re-identification mechanism whose per-individual footprint of approximately 94MB per animal per year produces a longitudinal visual record amenable to retrospective association with disease, lameness, reproductive, and growth outcome labels.

This paper presents a comparative evaluation of convolutional and transformer-based object detection architectures for early weed detection in tomato plantations. Representative models from each paradigm are considered, including YOLOv26-nano, a recent variant of the YOLO family, and RT-DETR Large and RF-DETR Medium as transformer-based architectures. The evaluation was conducted on the GROUNDBASED_WEED dataset, considering six weed classes and an additional category corresponding to unidentified plants, which allowed for the assessment of performance in terms of detection accuracy and computational efficiency using metrics such as precision, recall, average precision, and inference speed, as well as non-parametric statistical tests. The results highlight a clear trade-off between efficiency and contextual modeling: CNN-based detectors achieve high performance at a lower computational cost, while transformer-based approaches offer better global context capture at the expense of higher resource demands. These results provide practical criteria for model selection in precision agriculture applications.

Accurate fruit maturity identification is essential for determining harvest timing, as incorrect assessment directly affects yield and post-harvest quality. Although ripening is a continuous biological process, vision-based maturity estimation is typically formulated as a multi-class classification task, which imposes sharp boundaries between visually similar stages. To examine this limitation, we perform an annotation reliability study with two independent annotators on a held-out tomato dataset and observe disagreement concentrated near adjacent maturity stages. Motivated by this observation, we model maturity as a latent continuous variable and predict it probabilistically using a distributional detection head, converting the distribution into class probabilities through the cumulative distribution function (CDF). The proposed formulation maintains comparable performance to a standard detector under clean labels while better representing uncertainty. Furthermore, when controlled label noise is introduced during training, the probabilistic model demonstrates improved robustness relative to the baseline, indicating that explicitly modeling maturity uncertainty leads to more reliable visual maturity estimation.

Crop disease diagnosis from field photographs faces two recurring problems: models that score well on benchmarks frequently hallucinate species names, and when predictions are correct, the reasoning behind them is typically inaccessible to the practitioner. This paper describes Agri-CPJ (Caption-Prompt-Judge), a training-free few-shot framework in which a large vision-language model first generates a structured morphological caption, iteratively refined through multi-dimensional quality gating, before any diagnostic question is answered. Two candidate responses are then generated from complementary viewpoints, and an LLM judge selects the stronger one based on domain-specific criteria. Caption refinement is the component with the largest individual impact: ablations confirm that skipping it consistently degrades downstream accuracy across both models tested. On CDDMBench, pairing GPT-5-Nano with GPT-5-mini-generated captions yields \textbf{+22.7} pp in disease classification and \textbf{+19.5} points in QA score over no-caption baselines. Evaluated without modification on AgMMU-MCQs, GPT-5-Nano reached 77.84% and Qwen-VL-Chat reached 64.54%, placing them at or above most open-source models of comparable scale despite the format shift from open-ended to multiple-choice. The structured caption and judge rationale together constitute a readable audit trail: a practitioner who disagrees with a diagnosis can identify the specific caption observation that was incorrect. Code and data are publicly available https://github.com/CPJ-Agricultural/CPJ-Agricultural-Diagnosis

Effective pest recognition and management are crucial for sustainable agricultural development. However, collecting pest data in real scenarios is often challenging. Compared to other domains, pests exhibit a wide variety of species with complex and diverse morphological characteristics. Existing techniques struggle to effectively model the key visual and high-level semantic features of pests in a fine-grained manner. These limitations hinder the practical application of such methods in real agricultural scenarios. To address these critical challenges, we present a synergistic approach that integrates PestVL-Net, a novel vision-language framework, with two multi-species pest datasets to facilitate fine-grained pest learning. The visual pathway of PestVL-Net utilizes the Recurrent Weighted Key Value (RWKV) architecture, incorporating a saliency-guided adaptive window partitioning scheme to effectively model the fine-grained visual characteristics of pests. Concurrently, the linguistic component generates precise pest semantic descriptions by leveraging Multimodal Large Language Models (MLLMs) priors, critically informed by agricultural expert knowledge and structured via multimodal Chain-of-Thought (CoT) reasoning. The deep fusion of these complementary visual and textual representations enables fine-grained multimodal pest learning. Extensive experimental evaluations on multiple pest datasets validate the superior performance of PestVL-Net, highlighting its potential for effective real-world pest management.

Stomata play a crucial role in regulating plant physiological processes and reflecting environmental responses. However, accurate and high-throughput stomatal phenotyping remains challenging, as conventional approaches rely on destructive sampling and manual annotation, restricting large-scale and field deployment. To overcome these limitations, a noninvasive restoration-detection integrated framework, termed StomaD2, is developed to achieve accurate and fast stomatal phenotyping under complex imaging conditions. The framework incorporates a diffusion-based restoration module to recover degraded images and a specialized rotated object detection network tailored to the small, dense, and cluttered characteristics of stomata. The proposed network enhances feature representation through three key innovations: a column-wise structure for global feature interaction, context-aware resampling and reweighting mechanism to improve multi-scale consistency, and a feature reassembly module to boost discrimination against complex backgrounds. In extensive comparisons, StomaD2 demonstrated state-of-the-art performance. On public Maize and Wheat datasets, it achieved accuracies of 0.994 and 0.992, respectively, significantly outperforming existing benchmarks. When benchmarked against ten other advanced models, including Oriented Former and YOLOv12, StomaD2 achieved a top-tier F1-score/mAP of 0.989. The framework is integrated into a user-friendly, field-operable system that supports the fast extraction of eight stomatal phenotypes, such as density and conductance. Validated on more than 130 plant species, StomaD2's results highlight its strong generalizability and potential for large-scale phenotyping, plant physiology analysis, and precision agriculture applications.

This paper presents SWNet, a bimodal end-to-end cross-spectral network specifically engineered for the detection of camouflaged weeds in dense agricultural environments. Plant camouflage, characterized by homochromatic blending where invasive species mimic the phenotypic traits of primary crops, poses a significant challenge for traditional computer vision systems. To overcome these limitations, SWNet utilizes a Pyramid Vision Transformer v2 backbone to capture long-range dependencies and a Bimodal Gated Fusion Module to dynamically integrate Visible and Near-Infrared information. By leveraging the physiological differences in chlorophyll reflectance captured in the NIR spectrum, the proposed architecture effectively discriminates targets that are otherwise indistinguishable in the visible range. Furthermore, an Edge-Aware Refinement module is employed to produce sharper object boundaries and reduce structural ambiguity. Experimental results on the Weeds-Banana dataset indicate that SWNet outperforms ten state-of-the-art methods. The study demonstrates that the integration of cross-spectral data and boundary-guided refinement is essential for high segmentation accuracy in complex crop canopies. The code is available on GitHub: https://cod-espol.github.io/SWNet/

Image-based plant phenotyping depends on dense structural understanding of crops, yet pixel-level annotation remains expensive across species, organs, growth stages, and field conditions. General-purpose vision foundation models offer a natural route to label efficiency, but their web-scale pretraining objectives transfer weakly to agricultural imagery, where semantics are often determined by fine organ geometry inside repetitive, texture-dominated scenes. We introduce SPROUT, a diffusion foundation model for multi-crop plant phenotyping. SPROUT learns from 2.6 million unlabeled open-field images (MCD-2.6M) using a pixel-space Diffusion Transformer, and selects transferable features with a label-free effective-rank criterion over denoising timesteps. This design shifts pretraining from crop-based invariance to structure-preserving denoising, making the representation better aligned with dense phenotyping tasks. We evaluate SPROUT across dense phenotyping tasks, including organ segmentation, crop-weed parsing, depth estimation, and counting. SPROUT consistently improves over strong web-pretrained baselines, with the largest gains on dense structural prediction, and shows favorable label and compute efficiency compared with general-purpose and crop-specific foundation models. The source code and MCD-2.6M dataset are publicly available.

This paper introduces a benchmark for evaluating whether vision-language models (VLMs) can generate plant simulation configurations from imagery using in-context learning. We study this benchmark for cowpea plot reconstruction for plant simulations, where the VLM needs to generate structured JSON configurations that include field and plant information. Open-source multimodal models from Gemma 4 and Qwen3.5 families are evaluated on a synthetic cowpea dataset with known JSON ground truth and on a real drone orthophoto dataset with field-collected JSON. Five in-context learning methods are used, from format restriction instruction to few-shot image examples with auxiliary grounding information. The results show that VLMs can generate valid JSON outputs, can generally estimate days after planting (DAP), plant counts, plant locations, sun angles, and leaf chlorophyll content, and can render approximate simulations of cowpea plots. Error metrics fluctuate across model families and often remain worse than dataset baselines, particularly when VLMs' pretrained knowledge dominates over weak visual evidence. These results position image-to-simulation JSON generation as a promising but currently challenging task, and establish a benchmark for studying how multimodal reasoning, prompt design, and the sim-to-real domain gap affect plant phenotyping tasks.

High-resolution phenotyping at the level of individual leaves offers fine-grained insights into plant development and stress responses. However, the full potential of accurate leaf tracking over time remains largely unexplored due to the absence of robust tracking methods, particularly for structurally complex crops such as canola. Existing plant-specific tracking methods are typically limited to small-scale species or rely on constrained imaging conditions. In contrast, generic multi-object tracking (MOT) methods are not designed for dynamic biological scenes. Progress in the development of accurate leaf tracking models has also been hindered by a lack of large-scale datasets captured under realistic conditions. In this work, we introduce CanolaTrack, a new benchmark dataset comprising 5704 RGB images with 31,840 annotated leaf instances collected from 184 canola plants during their early growth stages. To enable accurate leaf tracking over time, we introduce LeafTrackNet, an efficient framework that combines a YOLOv10-based leaf detector with a MobileNetV3-based embedding network. During inference, leaf identities are maintained over time through an embedding-based memory association strategy. When trained directly on each target dataset without prior CanolaTrack fine-tuning, LeafTrackNet achieves HOTA scores of 88.03, 87.33, and 74.20 on CanolaTrack, KOMATSUNA, and MSU-PID, respectively, outperforming the corresponding second-best methods by 8.35, 4.94, and 1.62 HOTA points. This work provides a new benchmark for leaf-level tracking under realistic conditions and introduces CanolaTrack, which, to the best of our knowledge, is the largest leaf-tracking dataset for agricultural crops. Our code and dataset are publicly available at GitHub.

To address insufficient accuracy in multi-scale segmentation for agricultural habitat recognition, this study proposes a Dynamic Weighted Feature Fusion Network (DWFF-Net). Its encoder uses frozen DINOv3 to extract basic features and introduces a data-level adaptive dynamic weighting strategy based on relationships between image categories and feature maps. The decoder employs a dynamic weight calculation network for deep fusion of multi-level features and a hybrid loss for optimization. Statistical analysis shows that weight entropy tends to decrease as habitat category count increases, indicating adaptive adjustment of fusion strategy according to scene complexity. Experiments on a previously constructed agricultural habitat dataset validate DWFF-Net. Ablations yield mIoU 0.6979 and mF1 0.8049, exceeding the Static Weighted Feature Fusion Network by 1.82% and 1.54%, respectively, confirming that dynamic weighting improves multi-level feature utilization. Compared with U-Net, DeepLabv3+, SegFormer, and DPT, DWFF-Net improves mIoU by 16.32%, 6.49%, 4.17%, and 3.18%, respectively. For tiny features like scattered trees, IoU reaches 0.2707, outperforming those models by 99.85%, 11.45%, 22.24%, and 19.32%, verifying effectiveness in tiny habitat segmentation. This framework enables low-cost, high-precision habitat mapping and supports refined monitoring in agricultural landscapes.

Existing plant-disease datasets target classification and detection, leaving vision-language models unable to support interactive, reasoning-based diagnosis. To address this, we present PlantExpertVQA, a large-scale visual question answering (VQA) dataset designed to advance vision-language models for agricultural decision-making. It is compiled from 45 open-source datasets, including the widely used PlantVillage corpus, and comprises 765,186 high-quality question-answer (QA) pairs grounded over 150,841 images spanning 38 crop species and 89 disease conditions. Questions are organized into 3 levels of cognitive complexity and 9 distinct categories. Each was phrased following expert guidance and generated via an automated two-stage pipeline: template-based QA synthesis from image metadata, followed by multi-stage linguistic re-engineering. The dataset was iteratively reviewed by domain experts for scientific accuracy and relevance. We find that current frontier vision-language models, including recent open-source instruction-tuned multimodal LLMs, perform poorly on PlantExpertVQA. However, parameter-efficient fine-tuning of a compact 2B-parameter model on a small fraction of the dataset yields substantial improvements across all question categories, demonstrating its effectiveness for domain adaptation.

Crop type classification from optical satellite time series remains limited in its ability to generalize across growing seasons, particularly when crop phenology shifts due to inter-annual weather variability. This hampers deployment in operational settings where current-year labels are unavailable. In addition, uncertainty quantification is often overlooked, reducing the reliability of such approaches for practical crop monitoring. Inspired by ecophysiological principles, we introduce Thermal Time-based Temporal Sampling ($T^3S$), a simple, model-agnostic method that replaces calendar time with thermal time. By re-indexing satellite observations by cumulative growing degree days, $T^3S$ aligns phenologically equivalent growth stages across years, reducing temporal redundancy while concentrating on the most biologically informative periods. We evaluate $T^3S$ across three architecturally distinct backbones on (i) SwissCrop, a new country-scale, multi-year Sentinel-2 dataset with paired temperature data that we publicly release, and (ii) the cross-region TimeMatch benchmark spanning Denmark and France. Across these settings, $T^3S$ consistently improves cross-year and cross-region crop classification over several state-of-the-art baselines, including thermal positional encoding, with particularly strong gains in uncertainty calibration, robustness under label scarcity, and early-season prediction, while requiring no architectural modification.

This study conducted a comprehensive performance evaluation on YOLO11 (or YOLOv11) and YOLOv8, the latest in the "You Only Look Once" (YOLO) series, focusing on their instance segmentation capabilities for immature green apples in orchard environments. YOLO11n-seg achieved the highest mask precision across all categories with a notable score of 0.831, highlighting its effectiveness in fruit detection. YOLO11m-seg and YOLO11l-seg excelled in non-occluded and occluded fruitlet segmentation with scores of 0.851 and 0.829, respectively. Additionally, YOLOv11x-seg led in mask recall for all categories, achieving a score of 0.815, with YOLO11m-seg performing best for non-occluded immature green fruitlets at 0.858 and YOLOv8x-seg leading the occluded category with 0.800. In terms of mean average precision at a 50% intersection over union (mAP@50), YOLOv11m-seg consistently outperformed, registering the highest scores for both box and mask segmentation, at 0.876 and 0.860 for the "All" class and 0.908 and 0.909 for non-occluded immature fruitlets, respectively. YOLO11l-seg and YOLOv8l-seg shared the top box mAP@50 for occluded immature fruitlets at 0.847, while YOLO11m-seg achieved the highest mask mAP@50 of 0.810. Despite the advancements in YOLO11, YOLOv8n surpassed its counterparts in image processing speed, with an impressive inference speed of 3.3 milliseconds, compared to the fastest YOLO11 series model at 4.8 milliseconds, underscoring its suitability for real-time agricultural applications related to complex green fruit environments. Future work will compare YOLO26 (YOLOv26) and YOLO27 (YOLOv27) using the same dataset and training protocol.