AI Software Engineering

AI coding agents are being adopted at scale, yet we lack empirical evidence on how people actually use them and how much of their output is useful in practice. We present SWE-chat, the first large-scale dataset of real coding agent sessions collected from open-source developers in the wild. The dataset currently contains 6,000 sessions, comprising more than 63,000 user prompts and 355,000 agent tool calls. SWE-chat is a living dataset; our collection pipeline automatically and continually discovers and processes sessions from public repositories. Leveraging SWE-chat, we provide an initial empirical characterization of real-world coding agent usage and failure modes. We find that coding patterns are bimodal: in 41% of sessions, agents author virtually all committed code ("vibe coding"), while in 23%, humans write all code themselves. Despite rapidly improving capabilities, coding agents remain inefficient in natural settings. Just 44% of all agent-produced code survives into user commits, and agent-written code introduces more security vulnerabilities than code authored by humans. Furthermore, users push back against agent outputs -- through corrections, failure reports, and interruptions -- in 44% of all turns. By capturing complete interaction traces with human vs. agent code authorship attribution, SWE-chat provides an empirical foundation for moving beyond curated benchmarks towards an evidence-based understanding of how AI agents perform in real developer workflows.

Generative AI (GenAI) is reshaping software engineering by shifting development from manual coding toward agent-driven implementation. While vibe coding promises rapid prototyping, it often suffers from architectural drift, limited traceability, and reduced maintainability. Applying the design science research (DSR) methodology, this paper proposes Shift-Up, a framework that reinterprets established software engineering practices, like executable requirements (BDD), architectural modeling (C4), and architecture decision records (ADRs), as structural guardrails for GenAI-native development. Preliminary findings from our exploratory evaluation compare unstructured vibe coding, structured prompt engineering, and the Shift-Up approach in the development of a web application. These findings indicate that embedding machine-readable requirements and architectural artifacts stabilizes agent behavior, reduces implementation drift, and shifts human effort toward higher-level design and validation activities. The results suggest that traditional software engineering artifacts can serve as effective control mechanisms in AI-assisted development.

Frontier coding agents are increasingly used in workflows where users supervise progress primarily through repeated improvement of a public score, namely the reported score on a public evaluation file with labels in the workspace, rather than through direct inspection of the agent's intermediate outputs. We study whether multi-round user pressure to improve that score induces public score exploitation: behavior that raises the public score through shortcuts without improving hidden private evaluation. We begin with a preliminary single-script tabular classification task, where GPT-5.4 and Claude Opus 4.6 both exploit label information within 10 rounds of user-agent interaction. We then build AgentPressureBench, a 34-task machine-learning repository benchmark spanning three input modalities, and collect 1326 multi-round trajectories from 13 coding agents. On our benchmark, we observe 403 exploitative runs, spanning across all tasks. We also find that stronger models have higher exploitation rates, supported by a significant Spearman rank correlation of 0.77. Our ablation experiments show that higher user pressure leads to earlier exploitation, reducing the average first exploit round by 15.6 rounds (i.e., 19.67 to 4.08). As a mitigation, adding explicit anti-exploit wordings in prompt mostly eliminates exploitation (100% to 8.3%). We hope that our work can bring attention to more careful use of coding agents workflow, and developing more robust coding agents under user pressure. Our project page is at https://ucsc-vlaa.github.io/AgentPressureBench .

The rapid growth of scientific software has created practical barriers for bioinformatics research. Although powerful statistical, artificial intelligence (AI)-based methods are now widely available, their effective use is often hindered by fragmented distribution, inconsistent documentation, complex dependencies, and difficult-to-reproduce execution environments. As a result, reusing published tools and workflow adaptation to own date remains technically demanding and time-intensive, even for experienced users. Here, we present PoSyMed, an open and modular platform for the controlled integration, composition, and execution of bioinformatics tools and workflows. PoSyMed combines a backend-centered platform architecture with formal tool descriptions, controlled container-based build and execution processes, persistent workflow state, and a dialogue-based user interface. Large language models (LLM) are integrated not as autonomous decision-makers, but as human-computer interface with bounded semantic assistants that help identify tools, propose workflow steps, and support parameterization within a typed, validated, and human-supervised execution environment. PoSyMed is designed to improve reproducibility, traceability, and transparency in practical biomedical analysis within one platform. We describe the system architecture and evaluate its behavior across representative biological software scenarios with respect to workflow support, interaction design, and platform extensibility. PoSyMed is publicly available at https://apps.cosy.bio/posymed.

Systematic ablations are essential to attribute performance gains in AI Virtual Cells, yet they are rarely performed because biological repositories are under-standardized and tightly coupled to domain-specific data and formats. While recent coding agents can translate ideas into implementations, they typically stop at producing code and lack a verifier that can reproduce strong baselines and rigorously test which components truly matter. We introduce AblateCell, a reproduce-then-ablate agent for virtual cell repositories that closes this verification gap. AblateCell first reproduces reported baselines end-to-end by auto-configuring environments, resolving dependency and data issues, and rerunning official evaluations while emitting verifiable artifacts. It then conducts closed-loop ablation by generating a graph of isolated repository mutations and adaptively selecting experiments under a reward that trades off performance impact and execution cost. Evaluated on three single-cell perturbation prediction repositories (CPA, GEARS, BioLORD), AblateCell achieves 88.9% (+29.9% to human expert) end-to-end workflow success and 93.3% (+53.3% to heuristic) accuracy in recovering ground-truth critical components. These results enable scalable, repository-grounded verification and attribution directly on biological codebases.

Qualitative coding relies on a researcher's application of codes to textual data. As coding proceeds across large datasets, interpretations of codes often shift (temporal drift), reducing the credibility of the analysis. Existing Computer-Assisted Qualitative Data Analysis (CAQDAS) tools provide support for data management but offer no workflow for real-time detection of these drifts. We present Co-Refine, an AI-augmented qualitative coding platform that delivers continuous, grounded feedback on coding consistency without disrupting the researcher's workflow. The system employs a three-stage audit pipeline: Stage 1 computes deterministic embedding-based metrics for mathematical consistency; Stage 2 grounds LLM verdicts within $\pm0.15$ of the deterministic scores; and Stage 3 produces code definitions from previous patterns to create a deepening feedback loop. Co-Refine demonstrates that deterministic scoring can effectively constrain LLM outputs to produce reliable, real-time audit signals for qualitative analysis.

A major challenge for niche scientific and technical domains in leveraging coding agents is the lack of access to up-to-date, domain- specific knowledge. Foundational models often demonstrate limited reasoning capabilities in specialized fields and cannot inherently incorporate knowledge that evolves through ongoing research and experimentation. Materials scientists exploring novel compounds, communication engineers designing and evaluating new protocols, and bioengineering researchers conducting iterative experiments all face this limitation. These experts typically lack the resources to fine-tune large models or continuously embed new findings, creating a barrier to adopting AI-driven coding agents. To address this, we introduce a framework that gives coding agents instanta- neous access to research repositories and technical documentation, enabling real-time, context-aware operation. Our open-source im- plementation allows users to upload documents via doc-search.dev and includes zed-fork, which enforces domain-specific rules and workflows. Together, these tools accelerate the integration of coding agents into specialized scientific and technical workflows

AI coding assistants increasingly generate code alongside tests. How developers structure test code, whether inline with the implementation or in separate blocks, has traditionally been a matter of testing philosophy. We investigate whether this choice affects AI code generation quality. We conduct a large-scale empirical study (830+ generated files, 12 models, 3 providers) using SEGA, a three-dimensional evaluation framework measuring Determinism, Preservation, and Correctness. Comparing inline test syntax (Python doctests) against separated test syntax (Rust #[test] blocks) on a d-ary heap implementation, we find that: (1) inline tests yield near-perfect preservation (100%) and correctness (92-100%) across all models; (2) separated tests expose stark model-tier gaps (0-100% correctness) and independence between preservation and correctness; (3) model behavior evolves across generations, and notably one model breaks the test suppression pattern of its three predecessors; (4) mechanistic analysis on 7 open-source architectures (6 transformers and a gated-linear Recurrent Neural Network (RNN)) reveals inline test markers receive 2.8-4.4$\times$ stronger attention in 5/7 models, with causal validation via knockout and steering experiments on the 4 code-specialized transformers and RWKV-6; the co-location mechanism extends to a non-transformer architecture, suggesting the design recommendation is robust to future architectural shifts. In the Foundation Model era, test syntax structure is a software design concern: co-locating tests with implementation code produces measurably better AI-generated code. This arxiv long version includes appendices that further qualify the effect as bounded by both model capability and programming language.

Reward models (RMs) are central to aligning large language models (LLMs) with human preferences, powering RLHF and advanced decoding strategies. While most prior work focuses on single-step generation, real-world applications increasingly adopt multi-stage LLM pipelines, where effective reward guidance remains underexplored. We investigate this through code generation for combinatorial optimization, constructing a pipeline that integrates reward models into both formulation and solution stages. We identify a critical challenge: inconsistency between reward model predictions and actual pipeline execution outcomes. To address this, we propose the Pipeline-Adapted Reward Model (PARM), which leverages pipeline-specific data and direct preference optimization to align rewards with downstream feedback. We instantiate PARM as a two-stage pipeline (formulation -> code generation) and evaluate it on four public optimization benchmarks, measuring execution rate and solving accuracy against baselines and sampling methods. A supplementary cross-domain experiment on GSM8K assesses transferability. Results demonstrate that PARM consistently improves pipeline output quality and stability, providing new insights into reward modeling for multi-stage LLM reasoning.

Recently, code-oriented large language models (LLMs) have demonstrated strong capabilities in translating natural language into executable code. Text-to-SQL is a significant application of this ability, enabling non-technical users to interact with relational databases using natural language. However, state-of-the-art models continue to struggle with highly complex logic, particularly deeply nested statements involving multiple joins and conditions, as well as with real-world database schemas that are noisy or poorly structured. In this paper, we investigate whether curriculum learning can improve the performance of code-based LLMs on Text-to-SQL tasks. Employing benchmarks including Spider and BIRD, we fine-tune models under different curriculum strategies. Our experiments show that naive curriculum, simply ordering training samples by complexity in a single epoch, fails to surpass standard fine-tuning due to catastrophic forgetting. To overcome this, we propose a Modular Adapter Composition (MAC) strategy. By sequentially training tier-specific adapters on incremental complexity levels (Easy to Extra-Hard), we create a scaffolded learning environment that improves performance on complex queries. Our approach not only produces measurable performance gains on the Spider and BIRD benchmarks but also provides a flexible, "Lego-like" architecture, allowing models to be composed and deployed based on specific schema difficulty requirements. These findings demonstrate that structured, modular learning is a superior alternative to monolithic fine-tuning for mastering the syntax and logic of complex code generation.

Transpilation, or code translation, aims to convert source code from one programming language (PL) to another. It is beneficial for many downstream applications, from modernizing large legacy codebases to augmenting data for low-resource PLs. Recent large language model (LLM)-based approaches have demonstrated immense potential for code translation. Among these approaches, training-based methods are particularly important because LLMs currently do not effectively adapt to domain-specific settings that suffer from a lack of knowledge without targeted training. This limitation is evident in transpilation tasks involving low-resource PLs. However, existing training-based approaches rely on a pairwise transpilation paradigm, making it impractical to support a diverse range of PLs. This limitation is particularly prominent for low-resource PLs due to a scarcity of training data. Furthermore, these methods suffer from suboptimal reinforcement learning (RL) reward formulations. To address these limitations, we propose CodePivot, a training framework that leverages Python as an intermediate representation (IR), augmented by a novel RL reward mechanism, Aggressive-Partial-Functional reward, to bootstrap the model's multilingual transpilation ability without requiring parallel corpora. Experiments involving 10 PLs show that the resulting 7B model, trained on Python-to-Others tasks, consistently improves performance across both general and low-resource PL-related transpilation tasks. It outperforms substantially larger mainstream models with hundreds of billions more parameters, such as Deepseek-R1 and Qwen3-235B-A22B-Instruct-2507, on Python-to-Others tasks and Others-to-All tasks, respectively. In addition, it outperforms its counterpart trained directly on Any-to-Any tasks on general transpilation tasks. The code and data are available at https://github.com/lishangyu-hkust/CodePivot.

Vibe coding produces correct, executable code at speed, but leaves no record of the structural commitments, dependencies, or evidence behind it. Reviewers cannot determine what invariants were assumed, what changed, or why a regression occurred. This is not a generation failure but a control failure: the dominant artifact of AI-assisted development (code plus chat history) performs dimension collapse, flattening complex system topology into low-dimensional text and making systems opaque and fragile under change. We propose Agentic Consensus: a paradigm in which the consensus layer C, an operable world model represented as a typed property graph, replaces code as the primary artifact of engineering. Executable artifacts are derived from C and kept in correspondence via synchronization operators Phi (realize) and Psi (rehydrate). Evidence links directly to structural claims in C, making every commitment auditable and under-specification explicit as measurable consensus entropy rather than a silent guess. Evaluation must move beyond code correctness toward alignment fidelity, consensus entropy, and intervention distance. We propose benchmark task families designed to measure whether consensus-based workflows reduce human intervention compared to chat-driven baselines.

(1)Cross-border data transfers have become a matter of daily occurrence against the backdrop of the development of cloud computing and artificial intelligence. Consequently, where a data leak gives rise to civil liability, the determination of that liability inevitably assumes an international dimension involving foreign elements. (2)As is starkly demonstrated by secret sharing technology in cloud computing, fragments of data may be presumed to be distributed across multiple jurisdictions on a global scale. This renders traditional private international law measures -- predicated on the identification of a physical location -- inadequate for the purposes of determining the applicable law, a difficulty that is particularly acute in relation to non-contractual obligations. (3)Bearing in mind the typical scenario encountered in practice -- in which a Data Subject brings a claim for damages against a SaaS (Software as a Service) provider, which in turn seeks recourse against an IaaS (Infrastructure as a Service) or PaaS (Platform as a Service) provider -- a characteristic feature of such cases is the concurrence of contractual and non-contractual obligations. Taking this feature into account, it is possible to determine the applicable law governing non-contractual obligations through party autonomy -- by aligning it with the law governing the contractual obligation as selected by the parties, an approach that may be termed private ordering. This serves to overcome the difficulties associated with the identification of a physical location and, at the same time, contributes to ensuring the foreseeability of the parties.

Recent advances in large language models have highlighted their potential to automate computational research, particularly reproducing experimental results. However, existing approaches still use fixed sequential agent pipelines with weak global coordination, which limits their robustness and overall performance. In this work, we propose Hierarchical Research Agent System (HiRAS), a hierarchical multi-agent framework for end-to-end experiment reproduction that employs supervisory manager agents to coordinate specialised agents across fine-grained stages. We also identify limitations in the reference-free evaluation of the Paper2Code benchmark and introduce Paper2Code-Extra (P2C-Ex), a refined protocol that incorporates repository-level information and better aligns with the original reference-based metric. We conduct extensive evaluation, validating the effectiveness and robustness of our proposed methods, and observing improvements, including >10% relative performance gain beyond the previous state-of-the-art using open-source backbone models and significantly reduced hallucination in evaluation. Our work is available on GitHub: https://github.com/KOU-199024/HiRAS.

Recent advances in large language models for test case generation have improved branch coverage via prompt-engineered mutations. However, they still lack principled mechanisms for steering models toward specific high-risk execution branches, limiting their effectiveness for discovering subtle bugs and security vulnerabilities. We propose GLMTest, the first program structure-aware LLM framework for targeted test case generation that seamlessly integrates code property graphs and code semantics using a graph neural network and a language model to condition test case generation on execution branches. This structured conditioning enables controllable and branch-targeted test case generation, thereby potentially enhancing bug and security risk discovery. Experiments on real-world projects show that GLMTest built on a Qwen2.5-Coder-7B-Instruct model improves branch accuracy from 27.4% to 50.2% on TestGenEval benchmark compared with state-of-the-art LLMs, i.e., Claude-Sonnet-4.5 and GPT-4o-mini.

Practitioners have reported a directional pattern in AI-assisted code generation: AI-generated code tends to fail quietly, preserving the appearance of functionality while degrading or concealing guarantees. This paper introduces the Reward-Shaped Failure Hypothesis - the proposal that this pattern may reflect an artifact of optimization through human feedback rather than a random distribution of bugs. We define failure truthfulness as the property that a system's observable outputs accurately represent its internal success or failure state. We then present AIRA (AI-Induced Risk Audit), a deterministic 15-check inspection framework designed to detect failure-untruthful patterns in code. We report results from three studies: (1) an anonymized enterprise environment audit, (2) a balanced 600-file public corpus pilot, and (3) a strict matched-control replication comparing 955 AI-attributed files against 955 human-control files. In the final replication, AI-attributed files show 0.435 high-severity findings per file versus 0.242 in human controls (1.80x). The effect is consistent across JavaScript, Python, and TypeScript, with strongest concentration in exception-handling-related patterns. These findings are consistent with a directional skew toward fail-soft behavior in AI-assisted code. AIRA is designed for governance, compliance, and safety-critical systems where fail-closed behavior is required.

AI coding assistants have proliferated rapidly, yet structured pedagogical frameworks for learning these tools remain scarce. Developers face a gap between tool documentation and practical mastery, relying on fragmented resources such as blog posts, video tutorials, and trial-and-error. We present cc-self-train, a modular interactive curriculum for learning Claude Code, an agentic AI coding tool, through hands-on project construction. The system introduces five contributions: (1) a persona progression model that adapts instructor tone across four stages (Guide, Collaborator, Peer, Launcher), operationalizing Gradual Release of Responsibility for AI-mediated instruction; (2) an adaptive learning system that observes engagement quality through hook-based heuristics and adjusts scaffolding at two timescales, using streak detection for mid-module intervention and aggregate metrics for module-boundary persona changes; (3) a cross-domain unified curriculum in which five distinct project domains share identical feature sequencing, enabling transfer learning; (4) a step-pacing mechanism with explicit pause primitives to manage information overload in an AI-as-instructor context; and (5) an auto-updating curriculum design in which the onboarding agent detects upstream tool changes and updates teaching materials before instruction begins. A parametrized test suite enforces structural consistency as a proxy for pedagogical invariants across all 50 modules. A pilot evaluation with 27 participants shows statistically significant reported self-efficacy gains across all 10 assessed skill areas (p < 0.001), with the largest effects on advanced features such as hooks and custom skills. We discuss implications for the design of auto-updating educational systems.

Automated simulator construction requires distributional fidelity, distinguishing it from generic code generation. We identify two failure modes in long-horizon LLM agents: contextual drift and optimization instability arising from conflating structural and parametric errors. We propose SOCIA-EVO, a dual-anchored evolutionary framework. SOCIA-EVO introduces: (1) a static blueprint to enforce empirical constraints; (2) a bi-level optimization to decouple structural refinement from parameter calibration; and (3) a self-curating Strategy Playbook that manages remedial hypotheses via Bayesian-weighted retrieval. By falsifying ineffective strategies through execution feedback, SOCIA-EVO achieves robust convergence, generating simulators that are statistically consistent with observational data. The code and data of SOCIA-EVO are available here: https://github.com/cruiseresearchgroup/SOCIA/tree/evo.

LLMs are widely used for code generation and mathematical reasoning tasks where they are required to generate structured output. They either need to reason about code, generate code for a given specification, or reason using programs of thought. The typical approach to code generation is to prompt the model and generate samples until an appropriate program is obtained. Within this process, sampling $n$ programs from the language model requires $n$ GPU compute-intensive generations which becomes prohibitively expensive for larger values of $n$. In this work, we address this limitation by exposing the LLM's distribution within the generated programs themselves. We propose a novel test-time framework we dub probabilistic programs of thought to obtain more samples from the model with fewer LLM generations. Given a program generated by a model and the associated next-token probabilities, we build a probabilistic program that compactly represents exponentially many deterministic programs. Since performing probabilistic reasoning in this probabilistic program is much cheaper, our approach allows sampling new programs without any additional GPU compute and little CPU overhead. We instantiate our approach on benchmarks for code generation, code understanding and mathematical reasoning and report improvements in performance with fewer generations from the LLM.

In LLM-based code generation, multiple code candidates are often generated in parallel from the same prompt -- for example, in best-of-N sampling or multi-candidate code completion. These requests can share KV caches through a common prefix, yet the extent to which their Mixture-of-Experts (MoE) expert routing overlaps, and how this overlap varies across layers, remains insufficiently understood. We study Qwen3.5-35B-A3B-FP8 (256 routed experts, top-8) by performing tree-search-based branching generation from a shared prefix (851 completed codes, temperature 0.7) and analyzing the results with a compiler-output-based alignment (gcc -S -O0 assembly) that controls for token-identity confounds. Our findings are threefold: (1) At positions where both sequences generated the same token, Jaccard similarity reaches 0.649 (40x random), while even at positions with different tokens it remains 0.175 (11x random). (2) A layer-wise decomposition reveals a crossing pattern: same-token routing similarity exceeds different-token similarity across all layers, but dips in the middle layers (L14-20), while different-token similarity peaks in the middle layers at 14x random. (3) In tree-search code generation, 67% of successfully compiled codes concentrate in the top three assembly-equivalent groups, and 99.6% of within-group differences consist of comments and blank lines. We show that diversity in top-P search, including beam search, poses a significant challenge. These results refine the "context-independent routing" claim of prior work through layer-wise decomposition and suggest opportunities for improving search efficiency in LLM code generation.

Developing AI models that are useful in clinical practice, requires efficient collaboration between clinicians and AI developers. This poses a practical challenge: clinicians must repeatedly communicate and refine their requirements with AI developers before those requirements can be translated into executable model development. This iterative process is time-consuming, and even after repeated discussion, misalignment may still exist because the two sides do not fully share each other's expertise. Coding agents may help close this gap. They can write and refine code on their own, and they carry working knowledge of both medicine and AI to understand commands formulated by both medical experts and developers. We present a prototype that lets clinicians drive AI development directly. A clinician describes the task in plain language, and the system turns the description into a working pipeline, refines it through repeated experiments together with the clinician, and returns a model that meets the stated clinical objective. Across five clinical tasks, the system reliably produces models that matched the clinician's request and reached competitive performance. Most notably, on chest radiographs the system sharply reduced the model's reliance on chest drains, a well-known shortcut for pneumothorax classification, from 60% to 31% on one dataset and from 50% to 18% on another. Our results suggest that coding agents can shift clinical AI development toward a more clinician-driven mode, allowing domain experts to shape models directly instead of relaying requirements through specialized AI teams.

Large Language Model (LLM) agents are increasingly extended at runtime via skill packages, structured natural-language instruction bundles loaded from a well-known directory. Community install tooling and registries exist, but two gaps persist: no public tool scores skill packages against Anthropic's published format specification, and no mechanism bundles related skills with the shared context they need to remain mutually coherent. We present Skilldex, a package manager and registry for agent skill packages addressing both gaps. The two novel contributions are: (1) compiler-style format conformance scoring against Anthropic's skill specification, producing line-level diagnostics on description specificity, frontmatter validity, and structural adherence; and (2) the skillset abstraction, a bundled collection of related skills with shared assets (vocabulary files, templates, reference documents) that enforce cross-skill behavioral coherence. Skilldex also provides supporting infrastructure: a three-tier hierarchical scope system, a human-in-the-loop agent suggestion loop, a metadata-only community registry, and a Model Context Protocol (MCP) server. The system is implemented as a TypeScript CLI (skillpm / spm) with a Hono/Supabase registry backend, and is open-source.

Large Language Models are increasingly used as judges to evaluate code artifacts when exhaustive human review or executable test coverage is unavailable. LLM-judge is increasingly relevant in agentic software engineering workflows, where it can help rank candidate solutions and guide patch selection. While attractive for scale, current practice lacks a principled account of reliability and bias: repeated evaluations of the same case can disagree; small prompt edits can swing outcomes; and seemingly semantics-preserving, human-equivalent perturbations may elicit divergent verdicts. This paper studies LLM-as-a-Judge for code through a measurement-first lens. We analyze two pointwise judging regimes across code generation, code repair task, and test generation, and we systematically probe prompt-induced biases. Our study considers difficulty levels for repeated runs and controlled prompt interventions that isolate one presentation cue at a time, and it evaluates judges using consistency and sensitivity to bias. We find that judge decisions are highly sensitive to prompt biases even when the underlying code snippet is unchanged. Across all three tasks, several biases systematically shift preferences toward the option favored by the prompt, improving accuracy when that option aligns with the gold answer but substantially reducing it otherwise. In some settings, these effects are large enough to change task-level conclusions and alter relative model rankings. These findings show that reported judge performance may reflect prompt artifacts rather than stable assessment ability, posing a direct threat to the validity and reproducibility of code evaluation. We therefore argue that LLM-as-a-Judge studies should report bias sensitivity alongside accuracy and incorporate explicit controls to support more trustworthy model comparison in software engineering.

Prompt-induced cognitive biases are changes in a general-purpose AI (GPAI) system's decisions caused solely by biased wording in the input (e.g., framing, anchors), not task logic. In software engineering (SE) decision support (where problem statements and requirements are natural language) small phrasing shifts (e.g., popularity hints or outcome reveals) can push GPAI models toward suboptimal decisions. We study this with PROBE-SWE, a dynamic benchmark for SE that pairs biased and unbiased versions of the same SE dilemmas, controls for logic and difficulty, and targets eight SE-relevant biases (anchoring, availability, bandwagon, confirmation, framing, hindsight, hyperbolic discounting, overconfidence). We ask whether prompt engineering mitigates bias sensitivity in practice, focusing on actionable techniques that practitioners can apply off-the-shelf in real environments. Testing common strategies (e.g., chain-of-thought, self-debiasing) on cost-effective GPAI systems, we find no statistically significant reductions in bias sensitivity on a per-bias basis. We then adopt a Prolog-style view of the reasoning process: solving SE dilemmas requires making explicit any background axioms and inference assumptions (i.e., SE best practices) that are usually implicit in the prompt. So, we hypothesize that bias-inducing features short-circuit assumption elicitation, pushing GPAI models toward biased shortcuts. Building on this, we introduce an end-to-end method that elicits best practices and injects axiomatic reasoning cues into the prompt before answering, reducing overall bias sensitivity by 51% on average (p < .001). Finally, we report a thematic analysis that surfaces linguistic patterns associated with heightened bias sensitivity, clarifying when GPAI use is less advisable for SE decision support and where to focus future countermeasures.

The rapid proliferation of Large Language Models (LLMs) in software development has made distinguishing AI-generated code from human-written code a critical challenge with implications for academic integrity, code quality assurance, and software security. We present LLMSniffer, a detection framework that fine-tunes GraphCodeBERT using a two-stage supervised contrastive learning pipeline augmented with comment removal preprocessing and an MLP classifier. Evaluated on two benchmark datasets - GPTSniffer and Whodunit - LLMSniffer achieves substantial improvements over prior baselines: accuracy increases from 70% to 78% on GPTSniffer (F1: 68% to 78%) and from 91% to 94.65% on Whodunit (F1: 91% to 94.64%). t-SNE visualizations confirm that contrastive fine-tuning yields well-separated, compact embeddings. We release our model checkpoints, datasets, codes and a live interactive demo to facilitate further research.

Large Language Models (LLMs) excel at code generation but remain heavily reliant on large-scale annotated solutions and verification-based supervision, which constrains scalability and hinders sustained self-improvement. Recent solver--verifier frameworks exploit program execution as an automatic supervision signal, but their effectiveness degrades as solvers become moderately strong: verifier-generated tests increasingly confirm semantic correctness rather than exposing the remaining failure modes. We propose \textbf{ACE}, a self-evolving code generation framework based on a solver--adversary architecture that prioritizes active failure discovery through execution-centric supervision. A single LLM alternates between generating candidate programs and producing adversarial unit test inputs optimized to induce execution-level failures, such as runtime errors, exceptions, or non-termination. Supervision is derived solely from execution outcomes: robust programs are selected for supervised fine-tuning, while adversarial tests are optimized via Kahneman--Tversky Optimization using execution-derived preferences. Notably, the entire training loop requires no ground-truth code or external reward models. Experiments on CodeContests, MBPP, and LiveCodeBench demonstrate that ACE consistently outperforms strong solver--verifier baselines, achieving 3--7% absolute gains in pass@1, with larger improvements on out-of-distribution benchmarks, while maintaining competitive or improved inference efficiency.

Code search, framed as information retrieval (IR), underpins modern software engineering and increasingly powers retrieval-augmented generation (RAG), improving code discovery, reuse, and the reliability of LLM-based coding. Yet existing code IR models remain largely text-centric and often overlook the visual and structural aspects inherent in programming artifacts such as web interfaces, data visualizations, SVGs, schematic diagrams, and UML. To bridge this gap, we introduce MMCoIR, the first comprehensive benchmark for evaluating multimodal code IR across five visual domains, eight programming languages, eleven libraries, and show the challenge of the task through extensive evaluation. Therefore, we then propose CodeMMR, a unified retrieval model that jointly embeds natural language, code, and images into a shared semantic space through instruction-based multimodal alignment. CodeMMR achieves strong generalization across modalities and languages, outperforming competitive baselines (e.g., UniIR, GME, VLM2Vec) by an average of 10 points on nDCG@10. Moreover, integrating CodeMMR into RAG enhances code generation fidelity and visual grounding on unseen code generation tasks, underscoring the potential of multimodal retrieval as a core enabler for next-generation intelligent programming systems. Datasets are available at HuggingFace.

Large Language Models (LLMs) have shown promising progress for generating Register Transfer Level (RTL) hardware designs, largely because they can rapidly propose alternative architectural realizations. However, single-shot LLM generation struggles to consistently produce designs that are both functionally correct and power-efficient. This paper proposes HYPERHEURIST, a simulated annealing-based control framework that treats LLM-generated RTL as intermediate candidates rather than final designs. The suggested system not only focuses on functionality correctness but also on Power-Performance-Area (PPA) optimization. In the first phase, RTL candidates are filtered through compilation, structural checks, and simulation to identify functionally valid designs. PPA optimization is restricted to RTL designs that have already passed compilation and simulation. Evaluated across eight RTL benchmarks, this staged approach yields more stable and repeatable optimization behavior than single-pass LLM-generated RTL.

We investigate Functional Majority Voting (FMV), a method based on functional consensus for code generation with Large Language Models, which identifies a representative solution from multiple generations using their runtime execution signatures on test inputs. We find that FMV is an effective test-time inference strategy, substantially boosting performance on LiveCodeBench without a large compute overhead. Furthermore, we extend the utility of functional consensus and apply it as an aggregation strategy for label-free Test-Time Reinforcement Learning. We demonstrate that this increases pass@1 on holdout tasks, but find no evidence of self-improvement beyond the base model's performance ceiling.

Existing research on large language models (LLMs) for automated code compliance has primarily focused on performance, treating the models as black boxes and overlooking how training decisions affect their interpretive behavior. This paper addresses this gap by employing a perturbation-based attribution analysis to compare the interpretive behaviors of LLMs across different fine-tuning strategies such as full fine-tuning (FFT), low-rank adaptation (LoRA) and quantized LoRA fine-tuning, as well as the impact of model scales which include varying LLM parameter sizes. Our results show that FFT produces attribution patterns that are statistically different and more focused than those from parameter-efficient fine-tuning methods. Furthermore, we found that as model scale increases, LLMs develop specific interpretive strategies such as prioritizing numerical constraints and rule identifiers in the building text, albeit with performance gains in semantic similarity of the generated and reference computer-processable rules plateauing for models larger than 7B. This paper provides crucial insights into the explainability of these models, taking a step toward building more transparent LLMs for critical, regulation-based tasks in the Architecture, Engineering, and Construction industry.

AI-based systems, currently driven largely by LLMs and tool-using agentic harnesses, are increasingly discussed as a possible threat to software engineering. Foundation models get stronger, agents can plan and act across multiple steps, and tasks such as scaffolding, routine test generation, straightforward bug fixing, and small integration work look more exposed than they did only a few years ago. The result is visible unease not only among students and junior developers, but also among experienced practitioners who worry that hard-won expertise may lose value. This paper argues for a different reading. The important shift is not that software engineering loses relevance. It is that the thing being engineered expands beyond executable code to semi-executable artifacts; combinations of natural language, tools, workflows, control mechanisms, and organizational routines whose enactment depends on human or probabilistic interpretation rather than deterministic execution. The Semi-Executable Stack is introduced as a six-ring diagnostic reference model for reasoning about that expansion, spanning executable artifacts, instructional artifacts, orchestrated execution, controls, operating logic, and societal and institutional fit. The model helps locate where a contribution, bottleneck, or organizational transition primarily sits, and which adjacent rings it depends on. The paper develops the argument through three worked cases, reframes familiar objections as engineering targets rather than reasons to dismiss the transition, and closes with a preserve-versus-purify heuristic for deciding which legacy software engineering processes, controls, and coordination routines should be kept and which should be simplified or redesigned. This paper is a conceptual keynote companion: diagnostic and agenda-setting rather than empirical.

Large language models have demonstrated strong performance on general-purpose programming tasks, yet their ability to generate executable algorithmic trading strategies remains underexplored. Unlike standard code benchmarks, trading-strategy generation requires simultaneous mastery of domain-specific financial logic, knowledge of a specialized API, and the ability to produce code that is not only syntactically correct but also leads to actual trades on historical data. In this work, we present QuantCode-Bench, a benchmark for the systematic evaluation of modern LLMs in generating strategies for the Backtrader framework from textual descriptions in English. The benchmark contains 400 tasks of varying difficulty collected from Reddit, TradingView, StackExchange, GitHub, and synthetic sources. Evaluation is conducted through a multi-stage pipeline that checks syntactic correctness, successful backtest execution, the presence of trades, and semantic alignment with the task description using an LLM judge. We compare state-of-the-art models in two settings: single-turn, where the strategy must be generated correctly on the first attempt, and agentic multi-turn, where the model receives iterative feedback and may repair its errors. We analyze the failure modes across different stages of the pipeline and show that the main limitations of current models are not related to syntax, but rather to the correct operationalization of trading logic, proper API usage, and adherence to task semantics. These findings suggest that trading strategy generation constitutes a distinct class of domain-specific code generation tasks in which success requires not only technical correctness, but also alignment between natural-language descriptions, financial logic, and the observable behavior of the strategy on data.

We present AgentGA, a framework that evolves autonomous code-generation runs by optimizing the agent seed: the task prompt plus optional parent archives that initialize a fresh workspace. The outer loop searches over these reusable starting conditions rather than editing code directly. Each generation launches a fresh autonomous run in an isolated workspace, while selected parent archives provide inherited artifacts that descendants can inspect and reuse. AgentGA couples a population-level genetic algorithm with long-horizon agents; selection uses deterministic 1:1 elite tournaments and operator allocation is adapted online with a modified Hedge controller. We instantiate the approach for tabular AutoML on the 16-competition Weco-Kaggle Lite benchmark. Across the full benchmark, AgentGA averages 71.90% Exceeds % of Human versus 51.38% for the AIDE reference, winning 15/16 competitions. Within AgentGA runs, descendants conditioned on inherited parent archives win 51.9% of 1,680 parent-child tournaments versus 8.6% for de novo proposals. These results support agent-seed optimization as a practical design choice for autonomous code-search systems.

Recent advances in large language models have improved code generation, but their use in hardware description languages is still limited. Moreover, training data and testbenches for these models are often scarce. This paper presents a workflow that uses multi-agent models to generate testbenches for high-quality fine-tuning data. By automating testbench creation, the fine-tuned model for the specification-to-Verilog task achieves performance comparable to state-of-the-art methods on the refined VerilogEval v2 benchmark while using less training data. This study provides a basis for future work on LLM-based HDL generation and automated verification.

Effective code generation requires both model capability and a problem representation that carefully structures how models reason and plan. Existing approaches augment reasoning steps or inject specific structure into how models think, but leave scattered problem conditions unchanged. Inspired by the way humans organize fragmented information into coherent explanations, we propose StoryCoder, a narrative reformulation framework that transforms code generation questions into coherent natural language narratives, providing richer contextual structure than simple rephrasings. Each narrative consists of three components: a task overview, constraints, and example test cases, guided by the selected algorithm and genre. Experiments across 11 models on HumanEval, LiveCodeBench, and CodeForces demonstrate consistent improvements, with an average gain of 18.7% in zero-shot pass@10. Beyond accuracy, our analyses reveal that narrative reformulation guides models toward correct algorithmic strategies, reduces implementation errors, and induces a more modular code structure. The analyses further show that these benefits depend on narrative coherence and genre alignment, suggesting that structured problem representation is important for code generation regardless of model scale or architecture. Our code is available at https://github.com/gu-ni/StoryCoder.

Humans often specify tasks incompletely, so assistants must know when and how to ask clarifying questions. However, effective clarification remains challenging in software engineering tasks as not all missing information is equally valuable, and questions must target information users can realistically provide. We study clarification in real software engineering tasks by quantifying which types of information most affect task success and which questions elicit useful responses from simulated users. Using Shapley attribution and distributional comparisons, we identify two key properties of effective clarification: task relevance (which information predicts success) and user answerability (what users can realistically provide). We operationalize these properties as multi-stage reinforcement learning rewards to train CLARITI, an 8B-parameter clarification module, that matches GPT-5's resolution rate on underspecified issues while generating 41% fewer questions. Our results suggest that grounding reward design in empirical analysis of information impact and user answerability improves clarification efficiency.

Software documentation is essential for program comprehension, developer onboarding, code review, and long-term maintenance. Yet producing quality documentation manually is time-consuming and frequently yields incomplete or inconsistent results. Large language models (LLMs) offer a promising solution by automatically generating natural language descriptions from source code, helping developers understand code more efficiently, facilitating maintenance, and supporting downstream activities such as defect localization and commit message generation. However, the effectiveness of LLMs in documentation tasks critically depends on how they are prompted. Properly structured instructions can substantially improve model performance, making prompt engineering-the design of input prompts to guide model behavior-a foundational technique in LLM-based software engineering. Approaches such as few-shot prompting, chain-of-thought reasoning, retrieval-augmented generation, and zero-shot learning show promise for code summarization, yet current research remains fragmented. There is limited understanding of which prompting strategies work best, for which models, and under what conditions. Moreover, evaluation practices vary widely, with most studies relying on overlap-based metrics that may not capture semantic quality. This systematic literature review consolidates existing evidence, categorizes prompting paradigms, examines their effectiveness, and identifies gaps to guide future research and practical adoption.

Reinforcement learning (RL) paradigms have demonstrated strong performance on reasoning-intensive tasks such as code generation. However, limited trajectory diversity often leads to diminishing returns, which constrains the achievable performance ceiling. Search-enhanced RL alleviates this issue by introducing structured exploration, which remains constrained by the single-agent policy priors. Meanwhile, leveraging multiple interacting policies can acquire more diverse exploratory signals, but existing approaches are typically decoupled from structured search. We propose \textbf{MARS$^2$} (Multi-Agent Reinforced Tree-Search Scaling), a unified RL framework in which multiple independently-optimized agents collaborate within a shared tree-structured search environment. MARS$^2$ models the search tree as a learnable multi-agent interaction environment, enabling heterogeneous agents to collaboratively generate and refine candidate solutions within a shared search topology. To support effective learning, we introduce a path-level group advantage formulation based on tree-consistent reward shaping, which facilitates effective credit assignment across complex search trajectories. Experiments on code generation benchmarks show that MARS$^2$ consistently improves performance across diverse model combinations and training settings, demonstrating the effectiveness of coupling multi-agent collaboration with tree search for enhancing reinforcement learning. Our code is publicly available at https://github.com/TsinghuaC3I/MARTI.

Large Language Models (LLMs) are increasingly used in scientific peer review, assisting with drafting, rewriting, expansion, and refinement. However, existing peer-review LLM detection methods largely treat authorship as a binary problem-human vs. AI-without accounting for the hybrid nature of modern review workflows. In practice, evaluative ideas and surface realization may originate from different sources, creating a spectrum of human-AI collaboration. In this work, we introduce PeerPrism, a large-scale benchmark of 20,690 peer reviews explicitly designed to disentangle idea provenance from text provenance. We construct controlled generation regimes spanning fully human, fully synthetic, and multiple hybrid transformations. This design enables systematic evaluation of whether detectors identify the origin of the surface text or the origin of the evaluative reasoning. We benchmark state-of-the-art LLM text detection methods on PeerPrism. While several methods achieve high accuracy on the standard binary task (human vs. fully synthetic), their predictions diverge sharply under hybrid regimes. In particular, when ideas originate from humans but the surface text is AI-generated, detectors frequently disagree and produce contradictory classifications. Accompanied by stylometric and semantic analyses, our results show that current detection methods conflate surface realization with intellectual contribution. Overall, we demonstrate that LLM detection in peer review cannot be reduced to a binary attribution problem. Instead, authorship must be modeled as a multidimensional construct spanning semantic reasoning and stylistic realization. PeerPrism is the first benchmark evaluating human-AI collaboration in these settings. We release all code, data, prompts, and evaluation scripts to facilitate reproducible research at https://github.com/Reviewerly-Inc/PeerPrism.

Claude Code is an agentic coding tool that can run shell commands, edit files, and call external services on behalf of the user. This study describes its architecture by analyzing the publicly available source code and comparing it with two independent open-source AI agent systems, OpenClaw and Hermes Agent, that answer many of similar or even the same design questions. Our analysis identifies five human values, philosophies, and needs that motivate the architecture: human decision authority, safety, security, and privacy, reliable execution, capability amplification, and contextual adaptability. We then trace them through thirteen design principles to implementation choices. The core of the system is a simple while-loop that calls the model, runs tools, and repeats. Most of the code, however, lives in the systems around this loop: a permission system with seven modes and an ML-based classifier, a five-layer compaction pipeline for context management, four extensibility mechanisms (MCP, plugins, skills, and hooks), a subagent delegation and orchestration mechanism, and append-oriented session storage. Comparisons with OpenClaw and Hermes Agent show that the same design questions produce different answers across three deployment contexts. Claude Code emphasizes per-action safety, OpenClaw emphasizes perimeter-level access, and Hermes renders per-action approvals across many surfaces. At the runtime layer, Claude Code uses a single CLI loop, OpenClaw embeds the runtime within a gateway control plane, and Hermes uses one process whose role is set by its entry point. At the context and extension layer, Claude Code extends the context window, OpenClaw registers gateway-wide capabilities, and Hermes provides pluggable memory and model backends. We finally identify six open design directions for future agent systems, grounded in recent empirical, architectural, and policy literature.

Autonomous LLM agents now produce complete research artifacts in machine-learning sandboxes, but real computational physics is harder: experiments are first-principles calculations against re-runnable physical ground truth, and meaningful new work almost always builds on a key existing paper. We ask whether such an agent can perform grounded scrutiny of published computational physics - reading a paper, reproducing it from scratch, and surfacing methodological concerns from execution. We deploy a single Claude Opus 4.6 configuration at two complementary scopes. At scale, across 111 open-access Quantum ESPRESSO papers, an autonomous agent runs the read-plan-compute-compare loop and, although never asked to critique, raises substantive methodological concerns on ~42% of papers; 85 of 88 of these critiques (96.6%) surface only after the agent has actually run a calculation, with a reading-only ceiling of 1.8%. Critique emerges from reproduction, not from reading. In depth, on one Nature Communications paper on multiscale device simulation of a 2D-material MOSFET, a fresh agent inheriting a verified reproduction pipeline autonomously produces a 14-concern physics inventory and a complete, submission-form six-page Comment that revises the paper's L_G = 5 nm headline. Two of its L_G = 5 nm headline-challenging attacks - a source-degeneration contact-resistance bound and a Sb-doping degradation ratio - are absent from the published 21-reviewer peer review.

While recent LLM-based agents can identify many candidate bugs in source code, their reports remain static hypotheses that require manual validation, limiting the practicality of automated bug detection. We frame this challenge as a test generation task: given a candidate report, synthesizing an executable proof-of-concept (PoC) - such as a script, command sequence, or crafted input - to trigger the suspected defect. Automated PoC generation can act as a scalable validation oracle, enabling end-to-end autonomous bug detection by providing concrete execution evidence. However, naive LLM agents are unreliable validators: they are biased toward "success" and may reward-hack by producing plausible but non-functional PoCs or even hallucinated traces. To address this, we present ANYPoC, a general multi-agent framework that (1) analyzes and fact-checks a candidate bug report, (2) iteratively synthesizes and executes a PoC while collecting execution traces, and (3) independently re-executes and scrutinizes the PoC to mitigate hallucination and reward hacking. In addition, ANYPoC also continuously extracts and evolves a PoC knowledge base to handle heterogeneous tasks. ANYPoC operates on candidate bug reports regardless of their source and can be paired with different bug reporters. To demonstrate practicality and generality, we apply ANYPoC, together with a simple agentic bug reporter, on 12 large-scale, critical software systems, including Firefox, Chromium, LLVM, OpenSSL, SQLite, FFmpeg, and Redis. Compared to the state-of-the-art coding agents, e.g., Claude Code and Codex, ANYPoC produces 37% more valid PoCs for true-positive bug reports and rejects 9.7x more false-positive bug reports. ANYPoC also enables the discovery of 121 new bugs from over two thousand noisy bug reports, with 108 confirmed by developers and 92 fixed. 46 PoCs have also been adopted as official regression tests.

Embodied agents increasingly rely on modular capabilities that are installed, upgraded, composed, and governed at runtime, yet the interfaces between these modules are specified only at the level of message types, so integration failures surface only during execution. We present ECM Contracts, a contract-based interface model for embodied capability modules. Unlike conventional interfaces that specify only input and output types, ECM Contracts encode six dimensions of embodied execution: functional signature, behavioral assumptions, resource requirements, permission boundaries, recovery semantics, and version compatibility. On this model we build a compatibility framework that checks installation, composition, and upgrade before deployment, and a release discipline of version-aware compatibility classes and upgrade gates. We evaluate the prototype by predicting real, independently documented integration failures in the ROS ecosystem: contracts are reconstructed blind from each module's published interface, scored by a checker frozen before reconstruction against bugs from third-party datasets, and confirmed in live runtime execution. Contract checking predicts 56% and 72% of these documented failures across two substrates, against at most 17% for the strongest type and quality-of-service baselines, with the advantage statistically significant and zero false positives on matched-good controls. The resource and version dimensions carry most of this margin; the behavioral dimension adds little beyond the middleware's quality-of-service check, and we report the permission and recovery dimensions as forward-looking. Stable embodied software ecosystems require not just modular packaging but explicit contracts connecting composition, governance, and evolution.

Selecting LLM-generated code candidates using LLM-generated tests is challenging because the tests themselves may be incorrect. Existing methods either treat all tests equally or rely on ad-hoc heuristics to filter unreliable tests. Yet determining test correctness requires knowing which codes are correct, creating a \emph{circular dependency}. Our key insight is that we need not determine test correctness at all: \emph{test votes should rank, not merely count}. What matters is not how many codes pass a test, but whether the test can \emph{distinguish} correct from incorrect code. We break the circular dependency via leave-one-out evaluation: hold out one test, rank codes by their aggregate scores on all remaining tests, and measure whether the held-out test's pass/fail pattern agrees with this ranking. We formalize this agreement as the leave-one-out AUC~(LOO-AUC) and prove that the expected LOO-AUC is proportional to each test's ability to separate correct code from incorrect code. Building on this, we propose \textbf{ACES}~(\textbf{A}UC \textbf{C}onsist\textbf{E}ncy \textbf{S}coring) with two complementary variants: ACES-C provides closed-form weights that provably approximate the oracle in expectation under a mild assumption on average test quality; ACES-O drops this assumption and iteratively optimizes a differentiable LOO-AUC objective. Both operate solely on the binary pass matrix with negligible overhead, and achieve state-of-the-art Pass@$k$ on multiple code generation benchmarks.

Competitive programming remains one of the last few human strongholds in coding against AI. The best AI system to date still underperforms the best humans competitive programming: the most recent best result, Google's Gemini3 Deep Think, attained 8th place even not being evaluated under live competition conditions. In this work, we introduce GrandCode, a multi-agent RL system designed for competitive programming. The capability of GrandCode is attributed to two key factors: (1) It orchestrates a variety of agentic modules (hypothesis proposal, solver, test generator, summarization, etc) and jointly improves them through post-training and online test-time RL; (2) We introduce Agentic GRPO specifically designed for multi-stage agent rollouts with delayed rewards and the severe off-policy drift that is prevalent in agentic RL. GrandCode is the first AI system that consistently beats all human participants in live contests of competitive programming: in the most recent three Codeforces live competitions, i.e., Round1087 (Mar 21, 2026), Round1088 (Mar 28, 2026), and Round1089 (Mar 29, 2026), GrandCode placed first in all of them, beating all human participants, including legendary grandmasters. GrandCode shows that AI systems have reached a point where they surpass the strongest human programmers on the most competitive coding tasks.

Can a large language model (LLM) improve at code generation using only its own raw outputs, without a verifier, a teacher model, or reinforcement learning? We answer in the affirmative with simple self-distillation (SSD): sample solutions from the model with certain temperature and truncation configurations, then fine-tune on those samples with standard supervised fine-tuning. SSD improves Qwen3-30B-Instruct from 42.4% to 55.3% pass@1 on LiveCodeBench v6, with gains concentrating on harder problems, and it generalizes across Qwen and Llama models at 4B, 8B, and 30B scale, including both instruct and thinking variants. To understand why such a simple method can work, we trace these gains to a precision-exploration conflict in LLM decoding and show that SSD reshapes token distributions in a context-dependent way, suppressing distractor tails where precision matters while preserving useful diversity where exploration matters. Taken together, SSD offers a complementary post-training direction for improving LLM code generation. Our code is available at https://github.com/apple/ml-ssd

The world's 7,000+ languages vary widely in the availability of resources for NLP, motivating efforts to systematically categorize them by their degree of resourcefulness (Joshi et al., 2020). A similar disparity exists among programming languages (PLs); however, no resource-tier taxonomy has been established for code. As large language models (LLMs) grow increasingly capable of generating code, such a taxonomy becomes essential. To fill this gap, we present the first reproducible PL resource classification, grouping 646 languages into four tiers. We show that only 1.9% of languages (Tier 3, High) account for 74.6% of all tokens in seven major corpora, while 71.7% of languages (Tier 0, Scarce) contribute just 1.0%. Statistical analyses of within-tier inequality, dispersion, and distributional skew confirm that this imbalance is both extreme and systematic. Our results provide a principled framework for dataset curation and tier-aware evaluation of multilingual LLMs.

As Large Language Model (LLM) agents are increasingly deployed in open-ended domains like software engineering, they frequently encounter underspecified instructions that lack crucial context. While human developers naturally resolve underspecification by asking clarifying questions, current agents are largely optimized for autonomous execution. In this work, we systematically evaluate the clarification-seeking abilities of LLM agents on an underspecified variant of SWE-bench Verified. We propose an uncertainty-aware multi-agent scaffold that decouples underspecification detection from code execution. Across both proprietary and open-weight frontier LLMs, our scaffold achieves a 69.40% task resolve rate, significantly outperforming a standard single-agent setup and closing the performance gap with agents operating on fully specified instructions. Furthermore, we find that the multi-agent system exhibits well-calibrated information-seeking behavior, conserving queries on simple tasks while proactively seeking information on more complex issues. These findings indicate that current models can be turned into proactive collaborators, where agents independently recognize when to ask questions to elicit missing information in real-world, underspecified tasks.

As coding agents move into production workflows, teams need to know not only whether an agent completes a task, but whether its action can be trusted. We show that completion and trustworthiness diverge sharply and systematically. Across 1,750 trajectories on 50 SWE-bench Verified tasks, we compare four frontier models over repeated runs and separate submit rate from test-verified resolve rate. GPT-5 submits a patch on 100% of runs but resolves only 44%; Llama 4 submits on 99% but resolves 18%; and Gemini, despite submitting least often at 70%, resolves more tasks than GPT-5 (50% versus 44%). These gaps are not random: they concentrate in one dangerous failure mode we call silent semantic failure. Qualitatively, on a buggy task the agent submits a plausible-looking patch on all five runs, yet none pass, the same misinterpretation repeated rather than random error. Quantitatively, it dominates failure, covering 80% of Llama 4's failing runs and 68% of GPT-5's, and it is invisible: the outcomes are confidently and consistently wrong, so completion-based and consistency-based monitoring both look healthy exactly when the agent should not be trusted. Lightweight pre-edit prompts do not close the gap. A second probe isolates the instinct to act: given an already-fixed bug, where the right move is to abstain, most models still edit the correct code. This action bias, acting when no action is warranted, is exactly what completion metrics reward. The throughline is measurement: submit rate captures action, but trust requires validity. So evaluation must catch up: score agents by test-verified correctness over repeated runs, report its uncertainty, and reward those that know when not to act.

"Code-as-Policy" considers how executable code can complement data-intensive Vision-Language-Action (VLA) methods, yet their effectiveness as autonomous controllers for embodied manipulation remains underexplored. We present CaP-X, an open-access framework for systematically studying Code-as-Policy agents in robot manipulation. At its core is CaP-Gym, an interactive environment in which agents control robots by synthesizing and executing programs that compose perception and control primitives. Building on this foundation, CaP-Bench evaluates frontier language and vision-language models across varying levels of abstraction, interaction, and perceptual grounding. Across 12 models, CaP-Bench reveals a consistent trend: performance improves with human-crafted abstractions but degrades as these priors are removed, exposing a dependence on designer scaffolding. At the same time, we observe that this gap can be mitigated through scaling agentic test-time computation--through multi-turn interaction, structured execution feedback, visual differencing, automatic skill synthesis, and ensembled reasoning--substantially improves robustness even when agents operate over low-level primitives. These findings allow us to derive CaP-Agent0, a training-free framework that recovers human-level reliability on several manipulation tasks in simulation and on real embodiments. We further introduce CaP-RL, showing reinforcement learning with verifiable rewards improves success rates and transfers from sim2real with minimal gap. Together, CaP-X provides a principled, open-access platform for advancing embodied coding agents.

AI agents have become increasingly capable at isolated software engineering (SWE) tasks such as resolving issues on Github. Yet long-horizon tasks involving multiple interdependent subtasks still pose challenges both with respect to accuracy, and with respect to timely completion. A natural approach to solving these long-horizon tasks in a timely manner is asynchronous multi-agent collaboration, where multiple agents work on different parts of the task at the same time. But effective application of multi-agent systems has proven surprisingly difficult: concurrent edits by multiple agents interfere with each other, dependencies are difficult to synchronize, and combining partial progress into a coherent whole is challenging. On the other hand, human developers have long relied on mature collaboration infrastructure to manage these challenges in large software projects. Inspired by these collaboration primitives, we introduce Centralized Asynchronous Isolated Delegation (CAID), a structured multi-agent coordination paradigm grounded in three core SWE primitives: centralized task delegation, asynchronous execution, and isolated workspaces. CAID constructs dependency-aware task plans through a central manager, executes subtasks concurrently in isolated workspaces, and consolidates progress via structured integration with executable test-based verification. In empirical evaluation, we find that CAID improves accuracy over single-agent baselines by 25.6% absolute on paper reproduction tasks (PaperBench) and 14.7% on Python library development tasks (Commit0). Through systematic analysis, we find that branch-and-merge is a central coordination mechanism for multi-agent collaboration, and that SWE primitives such as git worktree, git commit, and git merge enable it to be realized in a reliable and executable manner.

Large language models~(LLMs) have demonstrated remarkable capabilities in code generation, yet their performance remains limited on domain-specific tasks such as Computer-Aided Design~(CAD) code generation, largely due to the scarcity of high-quality training data. In-Context Learning~(ICL) provides a training-free alternative by prompting LLMs with task-specific exemplars, but its effectiveness critically depends on how exemplars are selected. Existing selection strategies mainly rely on similarity or point-wise diversity, often overlooking the compositional nature of CAD design specifications, where a query may involve multiple functional requirements, geometric constraints, and design primitives. As a result, selected exemplars can be individually relevant but collectively redundant, providing insufficient coverage for complex design requirements. In this work, we propose \emph{knowledge sufficiency} as a principled objective for exemplar selection, aiming to select a compact set of exemplars that maximally satisfies the requirements contained in a target design specification. To instantiate this objective, we introduce \emph{Design-Specification Tiling~(DST)}, which estimates knowledge sufficiency through a surrogate tiling ratio by decomposing design specifications into multi-granular components and measuring the proportion of query components covered by selected exemplars. We further show that optimizing this objective can be formulated as a submodular maximization problem, and develop a polynomial-time greedy algorithm tailored to this setting with a $(1-1/e)$-approximation guarantee. Extensive experiments across multiple LLMs demonstrate that DST substantially improves CAD code generation quality and consistently outperforms existing ICL exemplar selection strategies, highlighting the importance of requirement-level knowledge coverage for domain-specific code generation.

Synthetic data has become essential for training code generation models, yet it introduces significant noise and hallucinations that are difficult to detect with current metrics. Existing data selection methods like Instruction-Following Difficulty (IFD) typically assess how hard a model generates an answer given a query ($A|Q$). However, this metric is ambiguous on noisy synthetic data, where low probability can distinguish between intrinsic task complexity and model-generated hallucinations. Here, we propose QAQ, a novel data selection framework that evaluates data quality from the reverse direction: how well can the answer predict the query ($Q|A$)? We define Reverse Mutual Information (RMI) to quantify the information gain about the query conditioned on the answer. Our analyses reveal that both extremes of RMI signal quality issues: low RMI indicates semantic misalignment, while excessively high RMI may contain defect patterns that LLMs easily recognize. Furthermore, we introduce a selection strategy based on the disagreement between strong and weak models to identify samples that are valid yet challenging. Experiments across three datasets spanning code generation (WarriorCoder, Magpie-Qwen2.5-Coder-Pro-300K) and math reasoning (OpenR1-Math-220k) demonstrate that selecting just 25% of data using stratified RMI matches full-data performance while being consistently competitive with or better than existing data selection methods. Our approach highlights the importance of bidirectional semantic coherence in synthetic data curation, offering a scalable pathway to reduce computational costs without sacrificing model capability. Code is available at https://github.com/XXSg559/QAQ.

Scientists face significant visualization challenges as time-varying datasets grow in speed and volume, often requiring specialized infrastructure and expertise to handle massive datasets. Petascale climate models generated in NASA laboratories require a dedicated group of graphics and media experts and access to high-performance computing resources. Scientists may need to share scientific results with the community iteratively and quickly. However, the time-consuming trial-and-error process incurs significant data transfer overhead and far exceeds the time and resources allocated for typical post-analysis visualization tasks, disrupting the production workflow. Our paper introduces a user-friendly framework for creating 3D animations of petascale, time-varying data on a commodity workstation. Our contributions: (i) Generalized Animation Descriptor (GAD) with a keyframe-based adaptable abstraction for animation, (ii) efficient data access from cloud-hosted repositories to reduce data management overhead, (iii) tailored rendering system, and (iv) an LLM-assisted conversational interface as a scripting module to allow domain scientists with no visualization expertise to create animations of their region of interest. We demonstrate the framework's effectiveness with two case studies: first, by generating animations in which sampling criteria are specified based on prior knowledge, and second, by generating AI-assisted animations in which sampling parameters are derived from natural-language user prompts. In all cases, we use large-scale NASA climate-oceanographic datasets that exceed 1PB in size yet achieve a fast turnaround time of 1 minute to 2 hours. Users can generate a rough draft of the animation within minutes, then seamlessly incorporate as much high-resolution data as needed for the final version.

Accurate time series forecasting underpins decision-making in many domains, yetconventional ML development often faces data scarcity, distribution shift, anddiminishing returns from manual iteration. We propose Self-Evolving Agent forTime Series Algorithms (SEATS), a framework that autonomously generates, val-idates, and optimizes forecasting algorithm code through an iterative self-evolutionloop. Our design combines three mechanisms: (1) Metric-Advantage MCTS(MA-MCTS), which replaces fixed rewards with a statistically normalized advan-tage score for search guidance, (2) code review with running prompt refinement,so every successfully executed solution is reviewed and the running prompt encodescorrective patterns for later iterations, and (3) global steerable reasoning, whichcompares each evaluated node to global best- and worst-performing solutions forcross-trajectory transfer. A MAP-Elites archive maintains architectural diversity.Across four datasets and two metrics, SEATS wins seven of eight comparisonsagainst strong baselines TimeMixer, Timer, and SEMixer

Design-to-code translates high-fidelity UI designs into executable front-end implementations, but progress remains hard to compare due to inconsistent datasets, toolchains, and evaluation protocols. We introduce 1D-Bench, a benchmark grounded in real e-commerce workflows, where each instance provides a reference rendering and an exported intermediate representation that may contain extraction errors. 1D is short for one day, representing the efficient completion of design-to-code tasks in less than one day. Models take both as input, using the intermediate representation as structural cues while being evaluated against the reference rendering, which tests robustness to intermediate representation defects rather than literal adherence. 1D-Bench requires generating an executable React codebase under a fixed toolchain with an explicit component hierarchy, and defines a multi-round setting in which models iteratively apply component-level edits using execution feedback. Experiments on commercial and open-weight multimodal models show that iterative editing generally improves final performance by increasing rendering success and often improving visual similarity. We further conduct a pilot study on post-training with synthetic repair trajectories and reinforcement learning based editing, and observe limited and unstable gains that may stem from sparse terminal rewards and high-variance file-level updates. The data and scripts used in this study are available in an anonymized repository at https://anonymous.4open.science/r/d2c-benchmark-A9C4/.

A widespread practice in software development is to tailor coding agents to repositories using context files, such as AGENTS.md. Although this practice is strongly encouraged by agent developers, there is currently no rigorous investigation into whether such context files are actually effective for real-world tasks. In this work, we study this question and evaluate coding agents' task completion performance in two complementary settings: established SWE-bench tasks from popular repositories, with LLM-generated context files, and a novel collection of issues from repositories containing developer-committed context files. Surprisingly, we find that providing context files does not generally improve task success rates, while increasing inference cost by over 20% on average. This observation holds across different LLMs, coding agents, and for both LLM-generated and developer-committed context files. Specifically, we find that while instructions in the context files are well followed by coding agents, repository overviews, although popular and recommended by model providers, are not helpful. We conclude that while context files are useful for specifying non-standard coding practices, any attempts to improve performance should be rigorously evaluated before deployment.

Large language models (LLMs) exhibit a wide range of capabilities, including mathematical reasoning, code generation, and linguistic behaviors. We show that Transformer architectures contain small subsets of attention heads that are necessary for certain capabilities. Zeroing out as few as five task-specific heads can degrade performance by up to $60\%$ on standard benchmarks measuring the capability of interest, while largely preserving performance on unrelated tasks. We introduce a compressed sensing-based method that exploits the sparsity of these heads to identify them via strategic knockouts and a small number of model evaluations. We validate these findings across Llama and Qwen models ranging from 1B to 14B parameters and a diverse set of capabilities including mathematical abilities and code generation, revealing a modular organization in which specialized capabilities are dependent on sparse, functionally distinct components. Overall, our results suggest that capability localization is a general organizational principle of Transformer language models, with implications for interpretability, model editing, and AI safety. Code is released at https://github.com/locuslab/llm-components.

We propose SWE-Universe, a scalable and efficient framework for automatically constructing real-world software engineering (SWE) verifiable environments from GitHub pull requests (PRs). To overcome the prevalent challenges of automatic building, such as low production yield, weak verifiers, and prohibitive cost, our framework utilizes a building agent powered by an efficient custom-trained model. This agent employs iterative self-verification and in-loop hacking detection to ensure the reliable generation of high-fidelity, verifiable tasks. Using this method, we scale the number of real-world multilingual SWE environments to a million scale (807,693). We demonstrate the profound value of our environments through large-scale agentic mid-training and reinforcement learning. Finally, we applied this technique to Qwen3-Max-Thinking and achieved a score of 75.3% on SWE-Bench Verified. Our work provides both a critical resource and a robust methodology to advance the next generation of coding agents.

The prohibitive cost of evaluating Large Language Models (LLMs) necessitates efficient alternatives to full-scale benchmarking. Prevalent approaches address this by identifying a small coreset of items to approximate full-benchmark performance. However, existing methods must estimate a reliable item profile from response patterns across many source models, which becomes statistically unstable when the source pool is small. This dependency is particularly limiting for newly released benchmarks with minimal historical evaluation data. We argue that discrete correctness labels are a lossy view of the model's decision process and fail to capture information encoded in hidden states. To address this, we introduce RepCore, which aligns heterogeneous hidden states into a unified latent space to construct representative coresets. Using these subsets for performance extrapolation, RepCore achieves precise estimation accuracy with as few as ten source models. Experiments on five benchmarks and over 200 models show consistent gains over output-based baselines in ranking correlation and estimation accuracy. Spectral analysis further indicates that the aligned representations contain separable components reflecting broad response tendencies and task-specific reasoning patterns.