Latent Structure

World Action Models (WAMs) advance beyond conventional visuomotor policies by jointly predicting future world states and robot actions, enabling the policy to learn physical dynamics that support effective control. However, recent tactile WAMs often rely on large-scale pretrained generative backbones to capture contact-rich physical dynamics, which limit their inference efficiency and flexible deployment. In this paper, we present \ABBR{}, an agile tactile World Action Model for contact-rich robot control. \ABBR{} encodes visual and tactile observations into a shared latent that serves as the source of a direct vision-tactile-to-action flow-matching process, which can jointly generate latent representations of action chunks and future visual/tactile latents. A key observation is that vision and tactile signals evolve at inherently different timescales: adjacent visual frames are often highly similar, whereas tactile signals can change abruptly upon contact. We therefore introduce multi-horizon multimodal prediction in \ABBR{}, which provides supervision for visual latent at a larger temporal offset while predicting the tactile latent in the next frame to capture fine-grained contact dynamics. Across nine simulated and five real-world contact-rich manipulation tasks, \ABBR{} demonstrates strong and robust performance, outperforming the strongest baseline in success rate while maintaining low inference latency. In particular, in five real-world experiments, \ABBR{} yields a relative gain of $\textbf{29.4\%}$ in overall success rates while achieving inference latency of $\textbf{11.9 ms}$. These results demonstrate that multimodal WAM can be achieved with an agile architecture suitable for precise and high-frequency robot control. More details are available on our project page: https://hanchuzhou.github.io/TARO_project_page/.

Spectral co-clustering is a useful tool for discovering latent structure in word-document matrices, but its reliance on singular value decomposition (SVD) can make standard formulations expensive on high-dimensional data. This paper presents two randomized approximations for normalized spectral co-clustering of bipartite text data when the numbers of document and word clusters may differ. The first method uses randomized SVD through random projection, while the second combines partial SVD with element-wise random sampling. Across real-world and synthetic datasets, both methods reduce runtime relative to the full-SVD baseline, but their behavior depends on matrix sparsity. The random projection method is the more reliable approximation across the tested settings, whereas the sampling-based method is most useful on denser matrices and provides limited benefit on already sparse text data. These results show that randomized approximations for spectral co-clustering should be selected according to the underlying structure of the data.

Generative models for implied volatility surfaces must produce outputs that satisfy static no-arbitrage constraints. We study these constraints in latent space. For a fixed generator, we assign each latent code a scalar margin determined by the no-arbitrage conditions of the generated surface. The codes with nonnegative margin form the admissible latent set. We establish conditions under which strictly admissible codes remain admissible under small perturbations and the boundary of the admissible set is characterized by zero margin. For regular boundary components, we formulate a level-set equation whose local dynamics are directed toward the zero-margin set. The analysis treats the generator as a map from latent variables to surfaces and is therefore not restricted to a particular architecture. It applies to variational autoencoders, generative adversarial networks, and other generative models with a deterministic realization map. Numerical tests recover known boundaries in analytic examples. Experiments with a variational autoencoder trained on Heston surfaces show that similar reconstruction errors can correspond to different admissible regions and that the latent prior may be concentrated inside such a region. The computed boundary can also be used to modify latent codes that generate violating surfaces.

Psychometric questionnaires contain rich item-level information, yet it remains unclear whether different representation learning objectives recover the same latent organization. We investigated this question using 757 matched teacher-child pairs from the baseline assessment of the Cyprus ProW preschool trial. Behavioral structure was characterized from child SDQ, ASBI, and CBRS item responses using principal component analysis and clustering, yielding four behavioral phenotypes. A contrastive objective substantially improved teacher-child retrieval relative to PCA-based representations, increasing Top-1 accuracy from 0.13% to 7.27% and Top-10 accuracy from 1.98% to 56.14%. However, contrastive representations preserved behavioral phenotype structure less effectively than PCA-based representations. A multi-task objective jointly optimizing alignment and behavioral prediction partially restored behavioral organization but reduced retrieval performance. These findings indicate that teacher-child correspondence and behavioral phenotypes represent distinct forms of latent organization and demonstrate that the latent structure recovered from linked psychometric data depends on the representation learning objective.

Missing data, measurement error, and population heterogeneity are pervasive challenges in analyzing data arising from modern observational studies and machine learning applications. Although these problems frequently coexist and interact, they are often treated separately in existing works. We propose a unified probabilistic framework that jointly addresses these issues utilizing deep latent variable representation. The proposed method integrates a novel hierarchical tree-routed variational autoencoder with pattern-aware latent representations and calibration-based denoising. The framework accommodates missing data mechanisms, including MCAR, MAR, and MNAR, while simultaneously learning subgroup-specific and globally shared latent structure. The introduced reconvergent routing mechanism enables selective parameters to be shared across related subpopulations, which offers flexibility as well as improved statistical efficiency. Simulation studies demonstrate substantial improvements over existing deep generative imputation approaches under complex heterogeneous missingness and measurement-error settings. The proposed framework provides a principled approach for learning from noisy and incomplete data in modern healthcare and other high-dimensional applications.

Sparse autoencoders are meant to name the things a language model computes, and the usual way to check that a latent matters is to switch it off and see what changes. But a latent fires at many tokens, and the effect has to be measured at one of them. The convention is to measure where the latent fires hardest. That choice is almost never reported, and it is not made by the experimenter: it is made by the dictionary under evaluation. Change the dictionary and the measurement moves to a different token. We show this is not a detail. Take two sparse autoencoders released by Google for the same model and match their latents by decoder similarity: even among the pairs the two dictionaries encode almost identically, they pick different tokens for a large share of them. Two dictionaries compared under the usual protocol are therefore very often compared at different places. To separate the convention from the dictionaries we train six autoencoders from one initialisation, differing only in fitting choices, so that a latent means the same thing in each. Most of the variance such a comparison reads as "these dictionaries disagree about this latent" turns out to be the position instead: it falls from 7.6% and 11.9% of variance to near zero once every dictionary is measured at the same token. More evaluation data does not rescue it. Across a sixteenfold range of corpus sizes the dictionaries agree less about where to measure, not more, so the problem grows with scale. The correction is one line of evaluation code. We give the protocol an ablation-based causal number must report to be comparable across papers, and an audit of five published papers against it. In short: a causal number reported without its position describes the token it was taken at as much as the latent it was taken from.

Latent diffusion models (LDMs) have recently significantly advanced embodied learning in constructing powerful embodied manipulation world models. However, despite the remarkable performance, existing LDMs predominantly rely on Variational Autoencoders (VAEs) optimized for natural scenes while failing to account for the unique characteristics of embodied manipulation scenarios, yielding latent representations that are neither compact nor controllable, thereby hindering efficient training of LDMs and precise robotic control. To solve this problem, we present EmbodiedVAE, a novel video VAE that provides compact yet controllable latent representations tailored for the robotic manipulation world models. Specifically, EmbodiedVAE adopts a dual-encoder, single-decoder architecture with an asymmetric spatio-temporal compression module, which automatically disentangles the robot arm's motion from background environment, resulting in overall compactness while providing explicit embodied latent to support fine-grained action control. To further preserve the temporal consistency of learned robotic motion latent, we introduce an optimal-transport-based consistency module that explicitly enforces motion fidelity and inter-frame coherence. Extensive experiments demonstrate that our proposed EmbodiedVAE achieves superior reconstruction quality with high compression rate, while enabling more precise action control in robotic manipulation scenarios with an average of 2dB PSNR improvement over state-of-the-art video VAEs.

Direct spectral editing in video-VAE latents can control noise, flicker, smoothness, and frequency content without a decode--filter--reencode pass. However, video VAEs may redistribute pixel-space frequency bands across latent channels, and latent edits can disrupt VAE round-trip dynamics. We introduce \emph{latent-frequency validity} (LFV), which learns a compact VAE-specific spectral response and deploys it only when it improves decoded-target fidelity without worsening round-trip drift. LFV follows a validation-selected path from a diagonal per-frequency calibrator (C1) to full channel mixing (CM), making cross-channel capacity a controllable per-edit resource. Across 544 VAE--edit cells spanning six spectral families, LFV emits 423 cheap operators: 277 are handled by C1, while 146 (34.5% of emitted operators) require channel mixing. On the primary 120-cell radial sweep, 99/100 emitted operators pass source-video-grouped held-out evaluation. Across five additional filter families, all 323 emitted operators pass held-out evaluation. Fully frozen OpenVid-fitted operators, including the validation-selected path coefficient, pass all 20 tested CogVideoX and HunyuanVideo generated-domain cells without adaptation. The selected response matches direct latent-filter latency and is about $3\times$ faster than pixel filter--reencode. The resulting maps reveal distinct VAE regimes, including strongly channel-coupled CogVideoX responses and a sharp Open-Sora high-band stability frontier.

Classical spoken dialogue systems often separated dialogue management from response realization: a policy selected the next dialogue action, and a generation component expressed that action. As dialogue systems shift toward LLMs, this decomposition has largely disappeared into the model's hidden representations. We ask whether an LLM-internal analogue of state estimation and action control can be recovered for conversational moves such as acknowledging, checking, querying, explaining, and replying. We formulate move control as two coupled problems: selection, predicting the appropriate next move from the dialogue context, and realization, causally producing a chosen move at generation time. We introduce Latent-IM, an internal dialogue-management framework that provides a general interface for choosing and deploying conversational moves under different objectives. Here, we use this control to reproduce human move choices, improving average end-to-end move accuracy by 12.5 points over the unsteered backbone while performing comparably to fine-tuning.

Understanding disease trajectories from longitudinal clinical data remains challenging due to complex temporal dynamics and heterogeneous patient cohorts. Here, we present a contrastive representation learning framework that models multivariate disease trajectories as temporal graphs and learns representations using contrastive graph neural networks. Nodes represent patient observations over time, while edges capture temporal continuity and structural similarity between trajectories. Structure-aware random walks guide contrastive learning to generate embeddings that preserve temporal context and trajectory topology. The resulting representations enable robust clustering of patients with similar disease progression patterns and reveal latent structure in longitudinal data.

The usefulness of a variational autoencoder (VAE) depends on two properties of its latent space that are hard to obtain together: high encoding capacity in the individual latent variables, and a low-dimensional, disentangled organization of those variables. Weakening the Kullback-Leibler regularization raises capacity but degrades disentanglement, while strengthening it prunes latent variables away entirely. We formulate VAE training as a soft-constrained optimization problem that addresses both. First, we impose an entropy-based constraint (EC) on individual latent variables, showing that the entropy of a latent code upper-bounds the mutual information it carries about the generative factors of the data. Second, we propose a weight-filter method that exploits the slack of the soft constraint to prune low-entropy dimensions during downstream training. On dSprites, the EC raises the aggregate latent-variable activation score by 43-62% over a vanilla VAE, attains the highest FactorVAE score among the \b{eta} \b{eta}-VAE variants (0.891 vs 0.847), and lowers reconstruction error by up to 38%. On MNIST, the weight filter reduces the latent dimensionality supplied to a downstream classifier from ten to two while holding accuracy above 90%, converging in 37% fewer epochs than the same procedure without the EC. We also find that low-entropy discrete factors tend to merge into a single latent variable, whereas high-entropy continuous factors are distributed across several.

Non--negative matrix factorization (NMF) has become an established dimensionality reduction technique for extracting latent structures from non--negative data and has found widespread applications in fields such as bioinformatics, text mining, image analysis, and recommender systems. As the popularity of NMF has increased, numerous \textit{R} packages implementing different optimization strategies and computational frameworks have been developed. Despite their widespread availability, comprehensive evaluations of these implementations under real--world data conditions remain limited. Consequently, researchers often lack objective guidance when selecting an appropriate package for practical applications. This study introduces a new \textit{R} package for NMF and offers asystematic performance comparison with two widely available \textit{R} packages for NMF analysis. Rather than relying on simulated datasets, the evaluation is conducted using real--world data to better reflect the complexity, heterogeneity, and noise characteristics encountered in practical analytical settings. The packages are assessed using a consistent experimental framework, with emphasis on computational efficiency, convergence behavior, reconstruction accuracy, memory utilization, and the stability of the resulting matrix factorization.

Within Explainable Artificial Intelligence, mechanistic interpretability uses Sparse Autoencoders (SAEs) to extract more interpretable features from neural representations. However, assessing their monosemanticity, and thus explanation quality, remains challenging. Existing metrics require external concept labels or depend on pretrained embedding models, making them sensitive to encoder's geometry. We introduce the Tversky Monosemanticity Score (TMS), a label-free metric that operationalizes monosemanticity as activation-set coherence of binarized SAE latents, and does not require external embedding encoders. We evaluate TMS on SAEs trained on features from pretrained vision and vision-language models (DINOv3, CLIP, BLIP2), two common SAE regimes (TopK, BatchTopK), multiple sparsity levels, and expansion factors. Our results show that TMS is less affected by encoder anisotropy than its embedding-based alternative, while remaining aligned with established monosemanticity indicators. TMS also reveals distinct SAE training dynamics across base models. Moreover, under encoder anisotropy, TMS provides a stronger indication of probe-based concept deletion effectiveness, while being competitive otherwise.

Speculative decoding has significantly accelerated Large Language Model (LLM) inference by alleviating memory-bound bottlenecks. However, traditional speculative decoding typically relies on auxiliary draft modules, incurring significant training and communication overhead. Although recent methods attempt to generate drafts within the target model itself, they often fail to fully exploit its latent parallel capacity due to a lack of structural coordination. In this paper, we propose \textbf{Progressive Tree Drafting (PTD)}, which employs a structured, guided parallel drafting strategy to harness the model's parallel potential. By coupling a progressive tree structure with a stepwise pruning mechanism, PTD actively guides the LLM to explore multiple semantic paths in a single forward pass, ensuring both draft diversity and coherence. Experiments demonstrate that PTD achieves up to $2\times$ decoding speedup across various benchmarks while remaining training-free and model-agnostic. Our code is available at: https://github.com/MINE-USTC/PTD.

Variational Autoencoders (VAEs) frequently suffer from posterior collapse, a failure mode in which the approximate posterior converges to the prior, rendering the latent code uninformative. Despite extensive research, a unified account of why collapse occurs has remained an open question. We identify and formalize two logically independent but coupled causes. \emph{Gradient imbalance} occurs when the decoder's reconstruction signal vanishes faster than the $\mathbb{KL}$ regularization pressure as the posterior widens. \emph{Information gap} occurs when the stochastic sampling step discards a substantial fraction of the encoder's computed representation, attenuating decoder sensitivity and making collapse inexpensive. Both causes share the same collapse trajectory, and we show that the information gap is algebraically equivalent to mismatch between the aggregate posterior and the prior, unifying two pathologies. Subsequently, we introduce $λ$-VAE, which resolves both causes through a single modification to the reparameterization step: the sampling noise is scaled by per-dimension exponent, while the $\mathbb{KL}$ penalty retains the original posterior variance. This asymmetry shifts the stable training attractor away from the degenerate collapsed state, driving all latent dimensions toward the same equilibrium -- a mechanism we term \emph{variance equalization}. A closed-form optimal exponent per dimension follows from a net information gain objective, with a single hyperparameter controlling the reconstruction-generation tradeoff. We validate on standard benchmarks (Binary MNIST, Binary Omniglot, CIFAR-10, CelebA-64), showing consistent reductions in collapsed dimensions, information capacity gains of up to $2.8\times$ nats, and reconstruction quality improvements of up to $+0.33$ BPD.

We envision continually learning agentic systems that become more useful over time: as they encounter sequences of related tasks, they should infer the hidden structure shared across those tasks and use it to improve future decisions. This cross-task experiential learning capability is pivotal in domains such as personalization and interactive assistance, but existing training/evaluation frameworks do not provide shared, controllable latent structures and cannot measure whether or why agents improve. We introduce LatentGym: a controllable suite in which each environment is organized around a ground-truth latent variable governing the structure across tasks. Our construction yields metrics that separate exploration (whether the agent's actions gather information about the latent) from exploitation (whether the agent uses what it has gathered). We demonstrate our suite on empirical studies addressing three questions: how and why frontier models fail to adapt across related tasks; whether post-training on related task sequences improves general cross-task adaptation, and where those gains come from; and how design choices such as inter-task feedback shape training dynamics and generalization. Together, these results establish a controlled foundation for studying how LLM agents learn from experience across tasks, and for designing agents that adapt more reliably in sequential, personalized, and interactive settings.

Sparse autoencoders (SAEs) are typically trained to reconstruct the \textbf{entire} residual stream through a sparse dictionary, implicitly assuming that all activation content is amenable to sparse, monosemantic decomposition. We question this assumption and hypothesize that activations contain a low-rank, dense component that is computationally important to the model yet inherently unsuitable for sparse representation, which serves as a major source of the persistent dense latents widely observed in trained SAEs. To test this, we add a small rank-$r$ linear bottleneck in parallel with standard SAEs (BatchTopK and Matryoshka), allowing dense structure to be absorbed before sparse reconstruction. On Gemma-2-2B layer 12, a rank-24 bottleneck reduces dense latent count by up to 84% while improving sparse probing and targeted probe perturbation on both architectures at matched sparsity. The absorbed component is (i) \textbf{structurally identifiable} as the top principal components and outlier dimensions; (ii) \textbf{causally necessary}, with removing it raising next-token cross-entropy by 7.5$\times$, far exceeding the 2.8$\times$ from removing the geometrically near-identical top-24 PCA directions; and (iii) \textbf{redundantly encoded by sparse dictionaries}, with ablating 787 maximally aligned sparse features raising cross-entropy by only 2.9$\times$ and ablating 2,048 topic-aligned features leaving MMLU topic classification virtually unchanged, whereas removing the scaffold drops it from 98.7% to chance. Together, our findings identify a compact, semantically informative and causally important component of residual stream activations (which we term a \textbf{computational scaffold}) that standard sparse dictionaries represent inefficiently, suggesting that the scope of sparsity-based interpretability methods warrants careful re-examination.

Latent chain-of-thought compresses reasoning by replacing visible reasoning traces with continuous hidden-state recurrence, but existing formulations are difficult to optimize with standard on-policy reinforcement learning (RL) and hard to interpret causally. Our key insight is that a single pair of explicit boundary tokens can address both issues at once: discrete entry and exit anchors make the latent block compatible with standard on-policy RL, and the same anchors offer a natural foothold for mechanistic analysis. Motivated by this, we propose SWITCH, a switchable latent reasoning framework. The model emits <swi> to enter latent mode and </swi> to exit. Because the boundaries are ordinary discrete tokens, the GRPO policy ratio is well-defined at every decision point. The same anchors also expose the latent steps to direct probing and causal intervention. We train the model with a visible-to-latent curriculum and a Switch-GRPO objective that propagates gradients through recurrent latent computation. SWITCH consistently outperforms prior hidden-state-recurrence latent reasoning approaches at similar scale. Mechanistic analysis through the boundary tokens further reveals three findings: (i) <swi> is a sharply localised, learned switching policy rather than a stylistic artefact; (ii) the latent step it opens performs problem-specific, causally important computation rather than acting as an inert placeholder; and (iii) that computation is concentrated at a single hidden-state transition on entry. Together, these results show that hidden-state-recurrence latent reasoning is both RL-trainable and open to direct mechanistic analysis, including of how on-policy RL itself improves the model from the inside.

High-Dimensional Low-Sample Size (HDLSS) tabular domains (e.g., omics) are characterized by $n \ll m$, where $n$ = number of samples, and $m$ = number of features. Such domains often exhibit strong local correlation groups, sparse cross-group dependencies, heavy-tailed non-Gaussian marginals, heteroscedastic noise, and structured missingness, making direct density learning in $\mathbb{R}^m$ ill-conditioned since $n \ll m$. We propose BSTabDiff, a block-subunit generative framework that partitions the $m$ observed features into $M$ latent blocks ($M \ll m$) and generates each block via a shared low-dimensional subunit variable, concentrating global dependence learning in the compact block-latent space $\mathbb{R}^M$ while decoding to the full feature space with copula-driven dependence, flexible per-feature marginals, and explicit missingness mechanisms. BSTabDiff supports modern deep priors on block latents, including diffusion and normalizing flows, enabling stable synthesis and controllable benchmark generation in the HDLSS regime. Empirically, BSTabDiff produces more realistic and stable high-dimensional synthetic data when compared with unstructured tabular generators on HDLSS data.

Backdoor attacks in large language models (LLMs) are often treated as isolated trigger-response failures, motivating defenses tailored to specific triggers or behaviors. We show this view is incomplete. Across diverse backdoor behaviors, we identify a shared latent mechanism that can be detected, causally controlled, and suppressed. Using sparse autoencoders (SAEs) on residual-stream activations, we find a small set of latent features consistently activated across jailbreaking, refusal manipulation, password-locking, bias induction, sentiment misclassification, and country-conditioned harmful advice. These features generalize across Qwen3, Gemma3, and Llama3.1 models from 4B to 32B parameters, and across both fine-tuning and weight-editing attacks. Through bidirectional activation steering, we show these features are causal: suppressing them reduces attack success, while amplifying them induces target behaviors on clean prompts. We further train lightweight SAE-feature classifiers that generalize zero-shot to unseen backdoors and outperform residual-stream and weight-diffing baselines. Finally, we introduce Concept Ablation Fine-Tuning (CAFT), which suppresses backdoor formation by ablating the shared latent subspace during training. Together, our results suggest that many backdoors rely on a transferable latent mechanism, enabling unified detection and mitigation.

Many scientific problems require inferring unobserved mechanistic latent states from indirect observations. While classical approaches, including expectation maximization, do not scale to combinatorially large spaces, deep learning approaches such as variational autoencoders typically form artificial latent states rather than reconstructing the mechanistic ground-truth states. Here, we introduce GReinSS, a policy learning framework that uses dynamically rescaled rewards to learn latent state distributions that maximize the observed data likelihood. We show that GReinSS accurately reconstructs simulated latent sets and latent graphs, outperforming alternative policy learning and generative modeling baselines. Additionally, GReinSS reconstructs isoforms from real short-read RNA sequencing data that better match isoforms detected by orthogonal long-read sequencing than the standard RSEM algorithm. Overall, GReinSS is a principled and practically effective approach for generative modeling and inference of combinatorial latent states from indirect observations.

Theoretical studies of machine learning models commonly consider different limiting regimes in which the learning dynamics of gradient descent becomes theoretically tractable. It is, however, desirable to have a systematically obtained picture of all qualitatively different extreme learning regimes for a particular type of models. In this paper we propose such a picture for large weight-tied linear autoencoders characterized by input and latent dimensions, initialization magnitude, and training set size. This model is nonlinear in the weights and its gradient flow does not have a general theoretical solution. We show that at the level of the formal loss-expansion hierarchy, its extreme regimes are naturally associated with faces of a triangular prism. In particular, there are five basic extreme regimes associated with the 2-faces of the prism: (1) large-data, (2) small-data, (3) mean-field, (4) narrow-latent, and (5) free. For regimes (1,2,3,4), we derive explicit expressions for both train and population limiting loss evolutions under gradient flow, obtaining very good agreement with experimental results.

Decision-focused learning (DFL) trains predictive models by optimizing downstream decision quality rather than standalone prediction accuracy. For contextual linear optimization, most existing DFL methods assume offline data and full observations of the objective cost vector. We develop an on-policy learning method for sequential contextual linear optimization under partial feedback, generalizing the standard bandit feedback setting. Our method learns a stochastic predict-then-optimize policy that samples a cost-vector prediction from a conditional distribution and solves the resulting downstream linear optimization problem. To update this distributional model, we introduce a two-component hybrid gradient estimator. The first component is a score function estimator, which provides an unbiased but potentially high-variance policy gradient estimate. The second is a decision-focused plug-in component that uses an auxiliary nuisance estimate of the latent cost vector to exploit the downstream optimization structure, becoming more informative as the estimate improves. We prove an $\mathcal{O}(T^{-1/2})$ bound on the average squared policy-gradient norm, matching the standard non-convex SGD rate. Experiments on top-$k$ selection, shortest path, combinatorial pricing, and a real-data energy-scheduling benchmark show that the hybrid gradient approach achieves lower cumulative regret than contextual-bandit-style baselines across all benchmarks, using both Gaussian and richer conditional generative models. Code is available at https://github.com/Joeyetinghan/on-policy-bandit-dfl.

Personalized generation with frozen large language models requires a conditioning signal that is both compact and current. Existing personalization methods typically retrieve or summarize user histories in text, or compress them into static latent profiles and soft prompts. These approaches are efficient, but they treat a user's past behavior as an aggregate profile and therefore mix stable identity, recent drift, and item content in the same representation. We propose LAtent Trajectory Tracking and Extrapolation (LATTE), a framework that represents personalization as forecasting a peer anchored relative preference state. For each historical session, LATTE subtracts a time masked baseline formed from comparable users who responded to the same item, producing a state that measures how the target user differs from peers under a shared item context. A lightweight sequence predictor then forecasts the next state in this trajectory, and a State to Token Bridge injects the forecast into a frozen instruction tuned LLM through a single anchored soft token. We provide a latent factor analysis showing when peer anchoring cancels shared item variation and why temporal forecasting trades off stale averages against noisy recent states. Experiments on Amazon Reviews 2023 and MemoryCD show that LATTE consistently outperforms retrieval, summary memory, static latent profiles, difference aware latent profiles, and soft prompt compression baselines. On Amazon Reviews 2023, LATTE improves average ROUGE-L from 0.219 for a static latent profile and 0.245 for the strongest added latent compression baseline to 0.259. Additional pairwise comparisons and diagnostic analyses suggest that the improvement is mainly due to forecasting user-specific trajectory information, rather than merely adding a soft prompt interface.

Deep learning models are vulnerable to adversarial perturbations, raising important concerns for safety-critical deployment. Empirical defenses can achieve strong robustness in practice, but lack formal guarantees, motivating the need for certifiably robust classifiers. While certified methods provide formal guarantees, they often yield overly conservative bounds due to their inability to exploit structure in complex data distributions. In this work, we propose a framework for designing certifiably robust classifiers that leverages latent structure in data representations. We first analyze the Gaussian mixture setting, deriving necessary and sufficient conditions for the existence of robust classifiers and constructing a classifier with a closed-form robustness certificate and generalization guarantees. Our main contribution is to show that exact structure is not required: we prove that if a pretrained encoder maps inputs to a latent distribution that is $\varepsilon$-close (in KL divergence) to a Gaussian mixture, then certified accuracy degrades gracefully, with an explicit bound relating robustness under the true and approximate distributions. This result enables the direct use of pretrained models without requiring exact distributional assumptions. Empirically, our method achieves state-of-the-art or competitive certified accuracy on CIFAR-10 and ImageNet, while maintaining strong clean performance and low computational overhead. Overall, our work establishes approximate latent structure as a practical and principled route to certifiable robustness.

We study exact constant collapse in variational autoencoders: the deterministic encoder mean becomes independent of the input. The prior remains the standard Gaussian. Before VAE training, we select a fixed teacher posterior from a GMM-based view of the data and attach a fixed latent-only simplex witness to the encoder mean. This construction yields two linked objects. The first is a certificate: if the witness prediction improves on the best constant predictor of the teacher, the encoder mean cannot be input-independent constant. The second is a local escape direction: on the collapsed manifold, the teacher residual gives a sample-dependent descent direction for the alignment loss. For any full-support teacher posterior, the same geometry also gives a closed-form latent code with zero teacher-witness alignment error. Its scaled versions trace a margin-energy path from the constant predictor to the exact teacher code, which quantifies non-collapse inside the protected witness subspace. We instantiate the method on MNIST, CIFAR-10, and CIFAR-100. With searched unsupervised PCA-GMM teachers, vanilla VAEs fail the teacher-witness certificate in all five seeds on CIFAR-10 and CIFAR-100, while RST variants pass in all five seeds. Under collapse-stress settings with $β_{\mathrm{KL}}\in\{2,4,8\}$, vanilla VAE again fails in all seeds, whereas RST-alpha-prefit remains certificate-positive. Escape trajectories on both natural-image datasets increase the witness margin from a low-margin initialization and exhibit nonzero teacher-induced gradient norms. The analysis is confined to exact constant collapse of the encoder mean; generation quality, decoder use, and other collapse modes remain separate questions.

Variational Autoencoders (VAEs) often exhibit a polarised regime in which latent variables separate into active, passive, and mixed subsets. Existing criteria for identifying active dimensions depend on a Gaussian prior, limiting their applicability to variational models and specific priors. We propose a simple information-theoretic classification of the polarised regime based on the entropy of the mean representation. We show theoretically how this entropy couples to KL minimisation through entropy--variance bounds, and we relate the resulting criterion to Bonheme's active/passive conditions. We also clarify a key limitation: entropy of the mean alone cannot reliably distinguish active from mixed dimensions without additional signals from the variance representation. Empirically, we evaluate the entropy criterion on $β$-VAEs, identifiable VAEs, Least-Volume Autoencoders, and L2-regularised autoencoders, and find that it consistently recovers a polarised regime when such a regime is present across the model classes studied. Finally, we show that passive dimensions can yield small but consistent improvements on downstream tasks when latent codes are appropriately normalised, suggesting that collapse is often a matter of scale rather than absolute information removal.

While generative models have shown promise in pediatric sleep analysis, the latent structure of their multimodal embeddings remains poorly understood. This work investigates session-wide diagnostic information contained in the sequences of 30-second pediatric PSG epochs embedded by a multimodal masked autoencoder. We test whether augmenting embeddings with PHATE-derived per-epoch coordinates and whole-night movement descriptors, persistent homology summaries of the embedding cloud, and EHR yields task-relevant signals. Simple linear and MLP models, chosen for interpretability rather than state-of-the-art performance, show that geometric, topological, and clinical features each provide complementary gains. For binary predictions, feature importance is task-dependent, and more expressive late-fusion models generally perform better, with AUPRC improving from 0.26 to 0.34 for desaturation, 0.31 to 0.48 for EEG arousal, 0.09 to 0.22 for hypopnea, and 0.05 to 0.14 for apnea. We also report Brier score and Expected Calibration Error, where the full fusion model yields the best calibration across all four binary tasks. Our study reveals that latent geometry/topology and EHR offer complementary, interpretable signals beyond embeddings, improving calibration and robustness under extreme imbalance.

How do LLMs learn in-context? Is it by pattern-matching recent tokens, or by inferring latent structure? We probe this question using a toy graph random-walk across two competing graph structures. This task's answer is, in principle, decidable: either the model tracks global topology, or it copies local transitions. We present two lines of evidence that neither account alone is sufficient. First, reconstructing the internal representation structure via PCA reveals that at intermediate mixture ratios, both graph topologies are encoded in orthogonal principal subspaces simultaneously. This pattern is difficult to reconcile with purely local transition copying. Second, residual-stream activation patching and graph-difference steering causally intervene on this graph-family signal: late-layer patching almost fully transfers the clean graph preference, while linear steering moves predictions in the intended direction and fails under norm-matched and label-shuffled controls. Taken together, our findings are most consistent with a dual-mechanism account in which genuine structure inference and induction circuits operate in parallel.

We study the grokking phenomenon through the lens of topology. Using persistent homology on point clouds derived from the embedding matrices of a range of models trained on modular arithmetic with varying primes, we identify a clear and consistent topological signature of grokking: a sharp increase in both the maximum and total persistence of first homology ($H_1$). Persistence diagrams reveal the emergence of a dominant long-lived topological feature together with increasingly structured secondary features, reflecting the underlying cyclic structure of the task. Compared to existing spectral and geometric diagnostics -- specifically, Fourier analysis and local intrinsic dimension -- persistent homology provides a unified geometric and topological characterization of representation learning, capturing both local and global multi-scale structure. Ablations across data regimes and control settings show that these topological transitions are tied to generalization rather than memorization. Our results suggest that persistent homology offers a principled and interpretable framework for analyzing how neural networks internalize latent structure during training.

Multi-modal large language models (MLLMs) advance vision language understanding but face inherent limitations in long-video tasks due to bounded perception context budgets. Existing agentic methods mitigate this via rule-based preprocessing, yet often suffer from information loss, high cost, and reliance on textual intermediates. We propose MACF, an end-to-end Multi-Agent Collaboration Framework that decouples per-agent perception budgets from global video complexity, enabling scalable video understanding while preserving visual fidelity. MACF partitions videos into segments for locally budgeted agents and enables holistic reasoning via an agent-native latent communication protocol. Each agent encodes partial observations into compact, task-sufficient tokens in a shared embedding space, allowing efficient and information-preserving collaboration by a central coordinator. We introduce a curriculum training strategy that progressively enforces semantic alignment, evidence summarization, and cross-agent coordination. Extensive experiments on diverse video understanding benchmarks show that MACF consistently outperforms state-of-the-art MLLMs and multi-agent systems under identical budget constraints, demonstrating the effectiveness of our latent collaboration for scalable video understanding.

Sparse Autoencoders (SAEs) have demonstrated significant success in interpreting Large Language Models (LLMs) by decomposing dense representations into sparse, semantic components. However, their potential for analyzing Vision Transformers (ViTs) remains largely under-explored. In this work, we present the first application of SAEs to the ViT [CLS] token for out-of-distribution (OOD) detection, addressing the limitation of existing methods that rely on entangled feature representations. We propose a novel framework utilizing a Top-k SAE to disentangle the dense [CLS] features into a structured latent space. Through this analysis, we reveal that in-distribution (ID) data exhibits consistent, class-specific activation patterns, which we formalize as Class Activation Profiles (CAPs). Our study uncovers a key structural invariant: while ID samples preserve a stable pattern within CAPs, OOD samples systematically disrupt this structure. Leveraging this insight, we introduce a scoring function based on the divergence of core energy profiles to quantify the deviation from ideal activation profiles. Our method achieves strong results on the FPR95 metric, critical for safety-sensitive applications across multiple benchmarks, while also achieving competitive AUROC. Overall, our findings demonstrate that the sparse, disentangled features revealed by SAEs can serve as a powerful, interpretable tool for robust OOD detection in vision models.

Large language models (LLMs) give stable answers to personality questionnaires, yet these self-reports fail to predict how the models behave. Is this gap an artifact of forcing human trait categories onto LLMs, or something deeper about LLM self-report? To find out, we built the first psychometric instrument whose dimensions are derived from LLM behavior rather than human psychology. Administering 300 items (240 Likert + 60 scenario) to 25 LLMs across 17 model families, 30 times each, exploratory factor analysis revealed five reliable, replicable factors: Responsiveness, Deference, Boldness, Guardedness, and Verbosity (all Tucker $φ\geq .957$, all $α\geq .930$). We collected 2,500 open-ended samples and had them rated by 151 humans and a three-judge LLM ensemble. Humans and judges agreed ($\bar{r} = .51$), but self-report predicted neither the ratings nor objective text measures computed from them: the gap persists even for constructs native to LLMs, where a human-mismatch explanation no longer applies. The exception is Verbosity, whose self-report reaches 74% of the criterion-reliability ceiling against human ratings, but does not track raw output length. On Responsiveness, self-report tracked LLM judges ($r = .53$) but not humans ($r = .04$), even though humans and judges otherwise agreed ($r = .59$). This pattern formally rejects any single latent construct driving all three measurements ($p = .007$). Self-report items and LLM judges share a source of variance that human observers do not, and controlling for measurable surface features (length, formatting, enthusiasm markers) does not remove it. This confound is invisible to the within-ensemble reliability checks used to validate LLM judges, and it poses a concrete risk for the LLM-as-judge pipelines now central to model evaluation. We release the instrument as a diagnostic probe for alignment-shaped self-description.

Recovering latent structure from count data has received considerable attention in network inference, particularly when one seeks both cross-group interactions and within-group similarity patterns in bipartite networks, which is widely used in ecology research. Such networks are often sparse and inherently imperfect in their detection. Existing models mainly focus on interaction recovery, while the induced similarity graphs are much less studied. Moreover, sparsity is often not controlled, and scale is unbalanced, leading to oversparse or poorly rescaled estimates with degrading structural recovery. To address these issues, we propose a framework for structured sparse nonnegative low-rank factorization with detection probability estimation. We impose nonconvex $\ell_{1/2}$ regularization on the latent similarity and connectivity structures to promote sparsity within-group similarity and cross-group connectivity with better relative scale. The resulting optimization problem is nonconvex and nonsmooth. To solve it, we develop an ADMM-based algorithm with adaptive penalization and scale-aware initialization and establish its asymptotic feasibility and KKT stationarity of cluster points under mild regularity conditions. Experiments on synthetic and real-world ecological datasets demonstrate improved recovery of latent factors and similarity/connectivity structure relative to existing baselines.

Language modeling has shown us that transformers can discover latent structure from context, but the dynamics of how they acquire different components of that structure remain poorly understood, leading to assertions that models just remix training data. In this work, we use the Alchemy benchmark in a controlled setting (Wang et al.,2021) to investigate latent structure learning. We train a small decoder-only transformer on three task variants: 1) inferring missing transitions from partial contextual information, 2) composing simple rules to solve multi-transition sequences, and 3) decomposing complex multi-step examples to infer intermediate transitions. By factorizing each task into interpretable components, we show that the model learns the different latent structure components in discrete stages. We also observe an asymmetry: the model composes fundamental transitions robustly, but struggles to decompose complex examples to discover the atomic transitions. Finally, using causal interventions, we identify layer-specific plasticity windows during which freezing substantially delays or prevents stage completion. These findings provide insight into how a transformer model acquires latent structure, offering a detailed view of how capabilities evolve during training.

Sparse Autoencoders (SAEs) extract features from LLM internal activations, meant to correspond to interpretable concepts. A core SAE training hyperparameter is L0: how many SAE features should fire per token on average. Existing work compares SAE algorithms using sparsity-reconstruction tradeoff plots, implying L0 is a free parameter with no inherently correct value aside from its effect on reconstruction. In this work we study the effect of L0 on SAEs, and show that if L0 is not set correctly, the SAE fails to disentangle the underlying features of the LLM. If L0 is too low, the SAE will mix correlated features to improve reconstruction. If L0 is too high, the SAE finds degenerate solutions that also mix features. Further, we present a proxy metric that can help guide the search for the correct L0 for an SAE on a given training distribution. We show that our method finds the correct L0 in toy models and coincides with peak sparse probing performance in LLM SAEs. We find that most commonly used SAEs have an L0 that is too low. Our work shows that practitioners must set L0 correctly to train SAEs with monosemantic features.