Cross-Dataset Generalization
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9 papers in the last four weeks, up 50% on the four weeks before. 0.1% of all new papers.
Latest papers 85
Cross-dataset generalisation remains a major barrier to clinical deployment of echocardiographic left ventricular segmentation, yet the sources of this shift are rarely disentangled. We examined whether transfer degradation could be estimated before deployment using handcrafted ultrasound descriptors, VAE latent features, and segmentation-derived latent features across six echocardiographic datasets. Geometry-aware preprocessing substantially improved several poor transfer cases, suggesting that much of the apparent domain shift reflects field-of-view and framing inconsistencies rather than intrinsic acoustic differences alone. Intensity z-normalisation changed dataset separability by less than 0.005, indicating that brightness and contrast are not the dominant shift axis. Absolute Dice drop on held-out source-target pairs was predicted with an R-squared value of 0.612, an MAE of 0.082, and a Spearman rho of 0.681. The variant without LV and fan-shaped features retained approximately 70% of this explanatory power, supporting mask-free transfer-risk monitoring. The most informative discrepancy measure depended on the representation, with CMD strongest in z-normalised handcrafted features, with an absolute r of approximately 0.86 and an R-squared value of approximately 0.70; log-Wasserstein strongest in VAE space, with an r of approximately -0.90 and an R-squared value of approximately 0.81; and log-MMD strongest in LV-segmentation latent features, with an r of approximately -0.92 and an R-squared value of approximately 0.84. Apparent vendor effects were largely dataset-confounded. Echocardiographic domain shift is therefore structured and measurable, and its impact on segmentation can be partly reduced through geometry-aware preprocessing and anticipated using representation-specific transfer-risk estimation.
Cross-Dataset Generalization in Breast MRI Tumor Classification via Class-Wise Dataset Mixing
Breast MRI is highly sensitive for detecting breast tumors, but exams contain many slices and require substantial reading time. Deep learning models often perform well on internal splits but can fail across institutions because of domain shift and dataset-origin bias. We study this failure mode for binary breast MRI tumor classification. EfficientNet-B3 and WaveViT-Small are trained using Duke Breast Cancer MRI and fastMRI, and evaluated only on the independent multi-center MAMA-MIA cohort. In a deliberately confounded setup, where label is perfectly correlated with dataset origin, external accuracy is near chance (0.5048--0.5265), despite very high recall. We then construct a mixed training set in which each class contains samples from both Duke and fastMRI, while preserving patient-level splitting, augmentation, and leakage controls. On MAMA-MIA, dataset mixing improves accuracy/F1 to 0.8463/0.8625 for WaveViT-Small and 0.8884/0.8994 for EfficientNet-B3. These results show that controlling dataset-origin bias is important for reliable breast MRI classification.
SpEmoC: A Balanced Speaker-Segment Multimodal Emotion Benchmark
Understanding human emotions in spoken conversations is a key challenge in affective computing, with applications in empathetic AI, human computer interaction, and mental health monitoring. However, existing datasets vary in scale, emotion distribution, modality alignment, and data partitioning strategies, which can influence reliable cross-dataset generalization and minority-emotion modeling. We introduce SpEmoC a Speaking segment Emotion for Conversations comprising 306,544 raw clips from 3,100 English language movies and TV series. From these, 30,000 high quality, class balanced clips are curated, featuring synchronized visual, audio, and textual modalities annotated for seven emotions through a hybrid pipeline that integrates pretrained models with human validation. SpEmoC uses strict movie- and series-level splits to prevent content overlap between split sets, allowing more reliable evaluation of model generalization. The dataset also maintains a near-balanced distribution across seven emotions, including minority classes such as Fear and Disgust, which supports more balanced learning across categories. Extensive experiments, including in-domain benchmarking, cross-dataset transfer, low-data training, class-imbalance analysis, and modality transfer show that balanced data and careful splitting lead to more stable performance across emotions when models are evaluated on other datasets. These results highlight the importance of dataset design for robust and transferable multimodal emotion recognition.
CardioMeta: Calibrated Multi-Task Prediction of Diabetes, Hypertension, and Cardiovascular Disease Across Population and EHR Data
Cardiometabolic diseases remain among the most persistent drivers of preventable morbidity because diabetes, hypertension, and cardiovascular disease frequently co-occur and share metabolic, vascular, demographic, and behavioral determinants. Existing machine learning studies for chronic disease prediction often emphasize discrimination on a single dataset, while underreporting label leakage, calibration, temporal robustness, external transportability, and subgroup reliability. This paper presents CardioMeta, a calibrated multi-task framework for joint prediction of diabetes, hypertension, and cardiovascular disease across population survey and electronic health record (EHR) data. The study uses NHANES for population-level model development and temporal validation, and MIMIC-IV for EHR-domain evaluation under substantial distribution shift. To reduce circular label reconstruction, the primary analysis excludes disease-defining variables from the corresponding prediction heads, while a full-clinical feature setting is retained only as sensitivity analysis. CardioMeta combines a shared cardiometabolic encoder with disease-specific gated heads and post-hoc probability calibration. In the leakage-reduced temporal validation setting, the model achieved a macro-AUROC of 0.839, macro-AUPRC of 0.536, macro-F1 of 0.614, and expected calibration error of 0.024, with modest but consistent improvements over strong gradient-boosting and neural tabular baselines. External evaluation on MIMIC-IV showed clear degradation under domain shift, while limited fine-tuning partially recovered performance. The findings indicate that the principal value of multi-task cardiometabolic modeling lies not in inflated accuracy, but in reproducible leakage control, calibrated probabilities, and transparent reliability reporting across heterogeneous healthcare data sources.
RED-Sphere: Hyperspherical Residual Edge Debiasing for Cross-Population Fundus Disease Domain Generalization
Medical image classifiers are often trained within one source population, yet clinical deployment requires robustness to patients whose appearance, acquisition style, and disease prevalence differ from the source cohort. Existing fairness and robustness methods often require group supervision or treat appearance variation as an undifferentiated nuisance, which is insufficient when population-correlated low-level cues and lesion evidence share edge and texture structure. We study a strict source-only cross-population setting, where external populations are unseen during optimization, validation, scheduling, hyperparameter and model selection. We propose RED-Sphere, a plug-and-play robustness framework for image classification under unseen population shifts. It estimates shortcut-sensitive nuisance responses with an edge and feature energy prior, attenuates dominant responses through residual soft gating, regularizes masked nuisance views with counterfactual-inspired consistency and separation losses, and predicts labels with normalized spherical prototypes. It favours angular semantic evidence over source-correlated activation magnitude while preserving lesion structure. Although demonstrated on 2D Scanning Laser Ophthalmoscopy (SLO) fundus classification for Age-Related Macular Degeneration (AMD) and Diabetic Retinopathy (DR), RED-Sphere is not tied to retinal anatomy: the same principle can be adapted with modality-specific nuisance priors wherever appearance shortcuts and semantic evidence are entangled. Under a strict White-only Harvard-FairVision protocol, RED-Sphere improves held-out macro-F1 across all 20 task and backbone comparisons, with average gains of 1.28 and 2.98 F1 points on AMD and DR. Gains in AUC and PR-AUC, visual diagnostics, ablations, and sensitivity analyses further support stronger external semantic alignment and more stable angular disease geometry.
Annotation-Free Furniture Codes: What They Encode, and How Far They Transfer
Layout-based 3D scene synthesizers place each object using two human-annotated channels: a categorical class label and a canonical-pose convention. We ask whether a single self-supervised token derived from object geometry can replace both, and study such tokens directly as a representation, decoupled from any synthesizer. A Finite Scalar Quantization (FSQ) point-cloud autoencoder is chamfer-trained on placed 3D-FUTURE furniture with no labels or pose annotations. Diagnostic probes recover fine-category (62.6 +/- 0.5%), super-category (85.6 +/- 1.3%), and yaw (52.7 +/- 0.5 deg) from the codes alone. Swapping the chamfer target from the rotated to the un-rotated point cloud collapses the yaw signal while raising class recovery, showing the codes' rotation content can be set by the training objective. Scaling across asset libraries needs codes that transfer; on an unseen dataset (ShapeNet), alignment is category-dependent: box-like furniture transfers, organically-shaped furniture does not, and a target-blind augmentation partly closes the gap.
Unsupervised Domain Adaptation for Calcification Classification in Mammography Across Multi-Site Datasets
Deep learning-based computer-aided diagnosis (CAD) systems have shown strong performance in breast cancer diagnosis, particularly for classification tasks in mammography. However, domain shifts across multi-site datasets remain a challenge, especially when models are applied to unseen domains. In this work, we proposed a calcification classification framework to improve malignant versus benign breast disease classification across multi-site mammography datasets. The framework consisted of two components: (1) an unsupervised domain adaptation module based on style transfer models (AdaIN and CycleGAN) to generate vendor-specific and technique-specific training samples without additional annotations, and (2) a supervised classification module using Swin Transformer V2 as the backbone. We evaluated the proposed method on three datasets: cross-validation on OPTIMAM (National Health Service, United Kingdom; n=2994), followed by external validation on EMBED (Emory University; n=125), and Duke Calcification Dataset v1 (n=788). These datasets cover multiple vendors and include both full-field digital mammography and synthetic 2D images derived from digital breast tomosynthesis. The proposed framework improved cross-site performance for both EMBED (AUC 0.68 to 0.72) and the Duke Calcification Dataset (AUC 0.68 to 0.73). These findings indicate that domain adaptation can reduce domain shifts and improve the generalization for calcification classification across multi-site datasets.
SleepBand: Single-Source Domain Generalization for Sleep Staging via Physiologically Structured Spectral Modeling
Generalizing sleep staging models to unseen datasets is challenging, and typical domain generalization (DG) methods often rely on multiple source domains or domain labels that are rarely available in practice. We tackle the stricter and more practical setting of single-source domain generalization: training on a single labeled source dataset, without domain labels or access to target data. We present SleepBand, a physiology-guided framework that embeds oscillatory priors via a learnable Morlet filter bank and a structured integration-and-recalibration pipeline. This anchors representations to domain-invariant sleep rhythms (e.g., slow waves, spindles), reducing reliance on dataset-specific artefacts. On five public datasets, SleepBand achieves state-of-the-art SDG performance and remains competitive under leave-one-domain-out (multi-source) DG. Analyses show that the learned filters align with canonical neurophysiology and that robustness stems from focusing on narrowband, physiologically meaningful cues. Our results suggest that principled, physiology-aware inductive biases are a promising path for robust single-domain sleep staging. Code is available at https://github.com/lzcn/sleep-band
The Good, the Bad, and the Brittle: Benchmarking Robustness and Generalisation of Histopathology Foundation Models
How robust and generalisable are pathology foundation models and have their scaling limites been reached? We benchmarked twelve pathology foundation models (PFMs) and ResNet baselines using our Robustness Evaluation and Enhancement Toolbox (REET) across eleven clinically realistic perturbations and a dissimilarity-driven Non-Redundant K-fold validation (NR-Kfold) protocol. We introduce a Perturbation Performance Index (PPI) to summarise accuracy trends under controlled perturbation sweeps and analyse robustness scaling with parameter count. We show that PFMs consistently outperform CNNs in both robustness and domain generalisation, yet model scaling shows diminishing returns: mid-sized models such (UNI2/Virchow-2 etc.) achieve comparable or greater resilience than larger systems. NR-Kfold analysis further reveals systematic accuracy loss and increased variability when training-test similarity is broken, underscoring the need for explicit distribution-shift evaluation. These findings suggest that the next generation of pathology foundation models must prioritise data quality, multimodality information and domain alignment over parameter count to achieve genuine clinical reliability.
Masked Generative-Contrastive Representation Learning for Cross-Dataset EEG-Based Emotion Recognition
Self-supervised learning (SSL) shows strong potential for cross-dataset transfer by improving feature representation and generalization. However, its application to EEG-based emotion recognition remains largely unexplored. Existing SSL methods struggle to capture the intricate spatiotemporal dependencies of EEG signals under varying channel configurations, extract fine-grained representations resilient to noise, and derive global features that generalize well across subjects. To address these challenges, we propose Masked Generative-Contrastive Representation Learning (MGCRL), a novel SSL framework specifically designed for EEG-based emotion recognition. Built upon a region-aware spatiotemporal encoder, MGCRL integrates generative and contrastive learning to achieve both fine-grained and global discriminative representations for cross-dataset generalization. MGCRL introduces three key designs: 1) a spatiotemporal encoder that incorporates region-based graph convolution to capture localized spatial and functional relationships, enhancing region-specific feature learning and mitigating the impact of varying EEG channel configurations across datasets; 2) a generative learning mechanism based on the joint embedding predictive architecture (JEPA) that utilizes masked features to capture noise robustness fine-grained representations, improving the model's capability to characterize subtle emotional states; and 3) a contrastive learning strategy that leverages masked and original features to learn temporally stable and cross-subject-invariant representations across the same stimuli, boosting emotion discrimination and cross-subject generalization. Under these designs, MGCRL exhibits remarkable ability to learn universal representation. Extensive experiments involving pretraining on the large FACED dataset and fine-tuning on multiple SEED-series datasets demonstrate the effectiveness of MGCRL.
SHIFT: Survival Prediction from Incomplete and Heterogeneous Genomic Data
Genomic prediction models often fail to transfer across institutions because sequencing panels differ across sites, creating structural feature missingness at deployment. Existing approaches to this challenge typically restrict analysis to genes shared across cohorts, exclude patients with incomplete profiles, or rely on test-time imputation, all of which can reduce robustness and limit the use of multi-center data. We propose Survival prediction Handling Incomplete Features using Transformer (SHIFT), a missingness-aware survival model that directly predicts from incomplete genomic inputs without test-time imputation. SHIFT represents each genomic feature separately and uses masked self-attention, along with a feature-availability mask, so that predictions are based only on observed inputs. Further, we introduce variable-rate feature masking during training to improve robustness to heterogeneous missingness patterns. We evaluate the approach on glioblastoma and lung squamous cell carcinoma with external validation across multiple cohorts, including a challenging setting with severe cross-cohort panel mismatch. Across these settings, SHIFT shows strong generalization and compares favorably with standard survival baselines and imputation-based approaches, while using a single model across differing feature sets. We also find that incorporating patients from incomplete cohorts during development can improve performance on external data, suggesting that partially observed cohorts need not be excluded from model building. These results support missingness-aware modeling as a practical strategy for multi-center survival prediction in precision oncology.
Unveiling Transferability in Trajectory Prediction via Latent Scene Embeddings
The growing availability of trajectory datasets has fueled major advances in data-driven motion prediction. Yet, models trained on one dataset often fail to generalize beyond their training domain as a result of differences in scene layouts, agent behaviors, and sensing conditions. A framework that learns latent representations of datasets and quantifies their similarity using distributional metrics is presented. This large-scale study covers 24 major datasets, including the most widely used motion-prediction benchmarks, and shows that the resulting transferability scores strongly correlate with cross-dataset model performance. The results provide practical guidance for dataset selection, pretraining, and large-scale foundation models for motion prediction, paving the way toward more generalizable and robust predictive systems.
CAN We Trust Your Results? A Cross-Dataset Study of Automotive IDS Evaluation
The increasing connectivity of modern vehicles has made securing in-vehicle communication networks a critical challenge. Intrusion Detection Systems (IDS) have been widely studied as a defense mechanism for detecting malicious activities on the Controller Area Network (CAN) bus. However, the evaluation of CAN IDS methods remains difficult due to inconsistencies in experimental setups and the lack of standardized benchmarking frameworks. As a result, reported performance often depends on dataset-specific characteristics and may not reflect how detection methods behave in different environments. This work introduces a benchmarking framework for consistent evaluation of CAN IDSs across multiple datasets. Using the proposed framework, we integrate seven publicly available CAN IDS datasets collected under different experimental conditions and perform cross-dataset evaluation of five conceptually different IDS approaches. Our results highlight how detection performance can vary significantly across datasets, demonstrating the importance of cross-dataset benchmarking for assessing the robustness and generalization capabilities of CAN IDS methods.
Beyond IID: How General Are Tabular Foundation Models, Really?
Foundation models for predictive machine learning on tabular data have recently gained significant traction in academia and industry. Research communities across disciplines are increasingly evaluating tabular foundation models on diverse datasets and tasks. However, these task- and discipline-specific evaluations remain largely inaccessible to model researchers because benchmark software and evaluation protocols are fragmented. As a result, model researchers rely on standard benchmarks, which are mostly defined for tasks where tabular foundation models already excel. The most challenging scenarios are excluded, limiting meaningful progress in the field by focusing on marginal improvements on IID data rather than on broader, more demanding challenges. To overcome this, we introduce BeyondArena, the first unified holistic benchmark for tabular data that supports diverse task types (IID, temporal, grouped), across sample size and feature dimensionality scales, with diverse feature types (with text, with high cardinality) from a broad range of disciplines. To enable unified benchmarking beyond standard benchmarks, we introduce Data Foundry, a Python framework and metadata schema for curating tabular datasets for predictive machine learning. Our results across 11 models and 142 curated datasets show that existing tabular foundation models excel on tiny- to medium-sized IID data, while traditional tree-based and deep learning models still dominate on non-IID, large, and high-dimensional datasets. BeyondArena guides model research for the most demanding challenges in tabular data, enabling progress towards truly foundational tabular models.
Underwater Source Detection and Classification for Signal-based Surveillance: Audio Dataset Curation and Cross-Domain Evaluation
Machine learning for underwater acoustics is constrained by the scarcity of publicly available labeled datasets. In contrast to air-acoustic domains, where large benchmarks enable rapid model development, underwater datasets are typically small and limited in acoustic diversity, restricting robust model training and cross-domain generalization. To help address this gap, we introduce a curated underwater audio dataset derived from an open-source maritime sound archive. The dataset contains over one thousand labeled audio segments across eight biologically and mechanically relevant acoustic classes, providing an additional resource for training models in data-limited underwater environments. Additionally, we establish a lightweight Convolutional Neural Network (CNN) baseline and propose a margin-enhanced loss with feature alignment to mitigate class confusion arising from data imbalance, acoustic similarity, and cross-domain mismatch. While the baseline achieves 96.35% in-domain accuracy, evaluation on ShipsEar reveals substantial domain shift; the proposed feature alignment improve zero-shot ship detection by 42.60%, demonstrating stronger robustness under distribution mismatch. We further release a transparent curation pipeline and reproducible benchmark to support future research on imbalance mitigation, domain adaptation, and data-efficient underwater acoustic classification.
Do Diabetic Foot Ulcer Segmentation Models Generalize? A Cross-Dataset Benchmark of CNN and Transformer Architectures
Deep learning models for diabetic foot ulcer (DFU) segmentation routinely report high accuracy, but they are almost always trained and tested on the same dataset, leaving their behaviour on data from a different clinical source largely unmeasured. We benchmark three representative segmentation architectures -- U-Net and DeepLabV3+ (convolutional) and SegFormer-B2 (Transformer) -- under an identical, leakage-screened protocol: training on the combined FUSeg/AZH wound data and evaluating, without fine-tuning, on two independent external datasets (DFUC2022 and Medetec). All models achieve strong in-domain performance (Dice 0.80--0.83) but degrade substantially across datasets. The degradation is, however, architecture-dependent: SegFormer-B2 generalizes best on both external sets (DFUC2022 Dice 0.557, Medetec Dice 0.786), outperforming both convolutional models, while the more complex DeepLabV3+ generalizes worse than the simpler U-Net. Per-image failure analysis on 2,160 images across both external test sets confirms that SegFormer-B2 produces the fewest catastrophic failures on DFUC2022 (31.1%), compared with U-Net (38.5%) and DeepLabV3+ (43.0%). The consistent ranking across two independent external sources, confirmed by Wilcoxon signed-rank tests (p < 0.001 on both datasets), indicates that architecture family, not model complexity, drives cross-hospital generalization.
SAGE: An Expert-Annotated South Asian GI Endoscopy Dataset for Multimodal Learning and Hallucination Analysis
Gastrointestinal cancers represent a growing health burden in the South Asian region, driven largely by rapid changes in socio-economic conditions & lifestyle habits. However, early diagnosis of such malignancies remains a significant challenge, largely due to a lack of modern equipment, lack of financial support, and a scarcity of GI experts. AI-assisted diagnosis & report generation, show great promise in alleviating this problem by providing low-skill manpower the technical expertise to perform diagnosis. However, almost all open-source, publicly available datasets are predominantly collected from the European region, with no representation from the South Asian region. The lack of open-source GI datasets from diverse geographic regions has made it difficult to assess whether population bias is present in existing models, and to develop geographically inclusive AI tools for automated GI diagnosis. To address this gap, we introduce SAGE: An Expert-Annotated South Asian GI Endoscopy dataset for image captioning, multi-label classification, and visual question answering (VQA) tasks. It consists of 1,300 images, their captions along with hallucination tag, 18 labels and 14,726 question-answer pairs making it well-suited for diverse range of tasks including classification, benchmarking, and fine-tuning large multimodal models (LMMs). We further conducted benchmarking of multi-class classifiers on the effect of population shift in GI imaging AI tasks, and contemporary LMMs on their performance. Our study reveals that task-specific models, such as multi-class classification models, suffer the most, with an average performance drop of 58% when evaluated on the South Asian dataset. For contemporary LMMs, benchmarking reveals a substantial drop in the average GREEN score for anatomical landmark detection (0.308) and abnormality detection (0.410).
Zero-Shot Vision-Language Models for Classroom Engagement Recognition: A Benchmark Study of Prompt Sensitivity and Cross-Dataset Generalization
Automated classroom engagement recognition holds substantial promise for scalable learning analytics, yet the suitability of modern Vision-Language Models (VLMs) for this task under zero-shot conditions remains largely unexplored. We present a systematic benchmark that evaluates five widely-used VLMs: CLIP, BLIP-VQA, GPT-4o, LLaVA-1.5-7B, and Qwen2.5VL-7B-Instruct across two complementary educational datasets: DAiSEE, an individual-student video dataset (300 sampled test clips), and the Student Classroom Behaviour dataset (SCB, 1,168 scene-level images). Each model is probed with three prompt variants spanning minimal, rubric-anchored, and chain-of-thought designs. Our experiments reveal three primary failure modes of zero-shot VLMs for engagement recognition: (1) near-random performance on individual students, with Cohen's kappa never exceeding 0.10 on DAiSEE; (2) severe class collapse, where models assign 85-100% of predictions to a single engagement level regardless of visual content; and (3) extreme prompt sensitivity, with accuracy swings of up to 32 percentage points on identical images depending solely on prompt phrasing. Remarkably, scene-level classification on SCB is substantially more tractable: CLIP and GPT-4o achieve kappa approximately 0.60 when prompted with behaviorally-grounded rubrics. We also document a practical barrier for deployment: GPT-4o's safety filters reject 98% of chain-of-thought requests involving individual student faces. Our findings provide a calibrated baseline and surface critical design considerations for the use of VLMs in educational observation systems.
When AUC Misleads: Polarization-Aware Evaluation of Deepfake Detectors under Domain Shift
Recent advances in generative AI, such as diffusion models and face-swapping tools, have enabled the creation of highly realistic deepfakes, leading to real-world harms including financial fraud and non-consensual explicit content. In response, deepfake detection has become an active research area, with recent methods increasingly focusing on improving generalization to unseen manipulations. This is typically evaluated using the Area Under the ROC Curve (AUC) measured separately across multiple datasets. However, such an evaluation fails to reflect real-world scenarios where detectors face a mixture of data sources and varying artifact types. To address this limitation, we introduce a novel metric, Cross-dataset AUC (Cross-AUC) that averages per-domain AUCs with a measure of prediction polarization for taking into account the robustness to domain shift. The polarization extent is quantified by the Wasserstein Distance between class score distributions. Cross-AUC not only assesses the generalization capabilities of deepfake detectors under domain shifts more realistically, but it is also interpretable as it better explains the reason behind a drop in performance. Experiments performed on seven benchmark datasets demonstrate its practical relevance.
A Large Scale Open-Source Image and Video Dataset for Robust Wildfire Detection and Classification
Wildfire detection and monitoring are critical for mitigating fire spread and reducing environmental and infrastructural damage. In this work, we introduce GWFP (Global Wildfire Prevention Dataset), a large-scale, open-source dataset of wildfire images and videos designed to support early fire and smoke detection research. GWFP contains geographically diverse wildfire scenes, including flames, smoke, Waterdog/Fog environmental conditions, Near Infrared (NIR) imagery, Ember, and challenging negative samples collected from real-world scenarios worldwide. To evaluate dataset robustness and cross-domain generalization, we benchmark multiple convolutional and transformer-based architectures across both in-domain and cross-dataset settings. Additionally, we explore lightweight frequency--spatial feature interaction using Hadamard-enhanced residual connections (HTE-ResNet) to analyze representation robustness under domain-shift conditions. Experimental results demonstrate strong cross-dataset generalization and practical utility for real-world wildfire monitoring applications. The dataset and source code will be publicly released upon acceptance.
Towards Graph Foundation Models for Dynamics in Complex Networked Systems: Lessons from Super-Spreader Identification in Multilayer Networks
Network dynamics - including spreading, influence maximisation, and epidemic modelling - remain largely confined to the transductive paradigm, where models are trained on a single network and cannot be reused on unseen graphs without retraining. We argue that inductive cross-network generalisation is a necessary prerequisite for Graph Foundation Models (GFMs) in this domain and propose four design properties towards this goal. As a proof of concept, ts-net (TopSpreadersNetwork), trained solely on synthetic multilayer networks (MLNs), demonstrates zero-shot generalisation to real-world MLNs of varying size and layer count, outperforming classical heuristics and transductive baselines on three of four metrics. Based on ts-net's performance, we further outline five open challenges towards building GFMs for network dynamics: scale, many-layer generalisation, self-supervised pretraining, cross-task transfer, and node-attribute integration.
Exploring the Scale and Diversity of Speech Anti-spoofing Datasets: Experiments and Analysis
The scale of speech anti-spoofing datasets has grown exponentially over the past decade, driven by the assumption that larger data leads to better performance. However, it remains unclear whether indiscriminate scaling commensurately improves model generalization. This study challenges the "scale-first" paradigm by decoupling the impacts of training data scale versus diversity. Through experiments on representative datasets, we report two key findings: (1) Larger is not always better. Expanding data scale excessively under fixed generation methods yields negligible returns and may even degrade cross-domain generalization due to overfitting.(2) Diversity outweighs scale. A smaller composite training set featuring diverse attacks significantly outperforms larger-scale datasets with limited diversity in cross-dataset evaluations. We conclude that future dataset construction should prioritize the diversity of generation methods over scale to effectively enhance model generalization.
New Benchmarking Shows Limited Generalization Power of TCR Antigenic Epitope Prediction Models
Accurate computational prediction of T cell receptor (TCR) antigen specificity would transform the study of T cell biology and enable scalable immune engineering, yet existing models lack sufficient sensitivity and specificity for broad applications. A major limitation is the absence of rigorously defined, unseen benchmark datasets that allow unbiased evaluation of model performance and generalizability. Here, we describe two complementary classes of datasets that meet this criterion and argue that they provide both a robust framework for model assessment and a foundation for next-generation TCR-antigen prediction algorithm development.
Evaluating Real-World Generalizability of Algorithm Selection Models
Algorithm Selection (AS) aims to automatically identify the most suitable optimization algorithm for a given problem instance by leveraging measurable problem characteristics and historical performance data. In this study, we investigate the generalization ability of AS models across both synthetic and real-world optimization landscapes. We consider two widely used academic benchmark suites (BBOB and CEC) and two real-world problem sets (robotics trajectory optimization tasks and unmanned aerial vehicle path-planning problems). Through a systematic cross-benchmark evaluation, we analyze how AS models transfer between domains, identify where generalization succeeds or breaks down, and highlight the challenges that arise when applying AS in realistic, domain-specific contexts. Our findings provide insights into the robustness of current AS approaches and inform the development of more reliable, broadly applicable AS systems for real-world optimization.
Generalization Limits in Vehicle Re-Identification
Vehicle re-identification focuses on retrieving images of the same vehicle from a gallery given a query image. Upon closer inspection of commonly used datasets, we observe that vehicles with few visual differences-e.g., the same make, model, and color-appear in both the training and test sets. As a result, methods that effectively memorize the training data tend to perform well on these test sets but struggle to generalize to other datasets. In this paper, we address this issue by proposing a novel evaluation approach that more effectively measures generalization capability to unseen vehicle types. To further study generalization performance, we also propose splitting the evaluation based on view, allowing us to differentiate the effect of viewpoint robustness from that of same-view re-identification. Our findings reveal that most state-of-the-art methods struggle with unseen vehicle types, and that their robustness to viewpoint changes and attention to detail are limited to vehicle types seen during training.
Chem-PerturBridge: a harmonized compendium of small molecule perturbation transcriptomic effects
Large perturbation models require training data encompassing chemical, cellular, and assay diversity. Current transcriptomic resources for small-molecule modeling, however, are fragmented across technologies, metadata conventions, controls, doses, and preprocessing pipelines. We introduce Chem-PerturBridge, a harmonized multi-dataset resource comprising over 37k compounds, 136 cellular contexts, and 1.25M transcriptomic samples across eight assay types, with standardized identifiers, metadata, and replicate-aware condition-level effects. We use the resource to evaluate matched-condition agreement across datasets and replicate agreement within datasets. Matched same-compound conditions generally show weak agreement in fine-grained logFC rankings and magnitudes across most dataset pairs, often falling below same-context different-compound baselines. In contrast, logFC direction agreement is substantially more stable and usually exceeds these baselines. We further evaluate Chem-PerturBridge as a pretraining resource for compound representation learning. Under a compound-held-out OP3 evaluation split, embeddings pretrained on Chem-PerturBridge improve over L1000-only embeddings, Morgan fingerprints, and the descriptor-free OP3 baseline across metrics. An extensive molecule-holdout evaluation across 11 datasets further shows that models trained on Chem-PerturBridge outperform or match those that are not. Chem-PerturBridge therefore supports both diagnostic evaluation of cross-dataset signature agreement and model-oriented reuse of heterogeneous perturbation transcriptomic data.
Half-Truth Audio Detection and Localisation: A Lightweight Cross-Attentive Architecture and a Cross-Corpus Diagnostic Study
Partially manipulated (half-truth) speech, where a short synthesised segment is spliced into an otherwise genuine utterance, is a harder and more realistic forensic threat than the fully synthesised deepfakes that dominate the literature. We present CAFNet, a lightweight (576K-parameter, 2.24 MB) cross-attentive architecture that fuses MFCC, LFCC, and Chroma-STFT features to jointly classify audio as real, fully fake, or half-truth, and regress the temporal boundaries of the synthesised region, at approximately 14 ms CPU latency. A component ablation shows cross-attention fusion is CAFNet's most load-bearing component; a deeply supervised auxiliary classification head from earlier iterations is not, and removing it improves every in-domain metric under 3-seed replication with substantially lower variance. On MLADDC T2+T3 the model reaches 97.55%0.69% ternary accuracy and 0.037 s boundary mean absolute error (MAE), to our knowledge, the first reported continuous splice- boundary localisation result on this benchmark. Zero-shot evaluation on two independent benchmarks shows transfer is capability- and corpus-dependent rather than uniform: on Half-Truth Audio Detection dataset (HAD), detection recall reaches 84.9% and ternary classification resolves half-truth correctly on half of true half-truth clips (50.4%), while on PartialSpoof, binary detection stays near chance (AUC 0.5544). We treat this asymmetry, not a single generalization verdict, as the finding. HAD localisation improves in absolute terms but degrades in relative terms, since in-domain localisation improved faster. An architectural change validated purely in-domain thus shifted the cross-corpus transfer profile, evidence that cross-corpus evaluation should accompany, not follow, in-domain architecture decisions.
Robust Cross-Domain Generalization Using Unlabeled Target Data with Source-Domain Supervision
It is often desirable to generalize medical imaging AI models trained with dense annotations to data acquired from different ultrasound scanners or clinical sites; however, retraining these models with new annotations is often difficult and costly. We examine this challenge in pediatric wrist fracture assessment using point-of-care ultrasound (POCUS), where fractures are common and can be effectively triaged via ultrasound. AI has shown radiologist-level performance for fracture detection, often aided by high-quality bony structure segmentation. However, due to significant domain shifts, models perform poorly on data from other centers or probes, and obtaining segmentation labels across devices is impractical due to manual annotation effort and data privacy concerns. To address this, we propose a target-informed self-supervised pretraining and model-ensemble strategy. Specifically, our approach combines masked image modeling (MIM) and contrastive learning to learn target-domain structural representations without labels, and introduces a confidence-aware infusion head to adaptively integrate predictions. The source dataset, collected with a Philips Lumify probe, contained dense labels, while the target dataset, acquired with a TeleMED portable probe, was unlabeled. The datasets were kept strictly separate throughout the entire process. Our method used labeled source data for supervised training and leveraged target-domain pretraining to improve generalization. On 318 images from 62 pediatric POCUS videos, this approach significantly improved cross-device performance, achieving over 6% Dice improvement on the target domain versus the baseline. These results demonstrate a label-efficient and privacy-preserving approach for cross-device-robust ultrasound AI, offering a framework that can be extended to multi-center studies or federated learning setups.
Explaining Tabular Foundation Model Differences Through Meta-Features
With the rise of tabular foundation models alongside traditional models still performing well on many tasks, choosing the right model for a tabular dataset remains difficult. We investigate whether dataset meta-features can explain performance gaps between model families on tabular prediction tasks. Using the TabArena benchmark results, we analyze dataset-level performance gaps and relate them to model-agnostic meta-features. After strict statistical tests with false discovery control, we find that (1) for neural network vs. tree gaps, no meta-feature survives false discovery control, (2) for non-foundation vs. foundation model gaps, one association is robust but does not generalize when tested in leave-one-dataset-out prediction, and (3) for TabICLv2 vs. TabPFN-2.6, one robust association also improves held-out prediction. Furthermore, we conduct a leave-one-dataset-out analysis and find that meta-feature predictors fail to improve meaningfully over a simple baseline. Overall, our results show the heterogeneity of tabular datasets and that global meta-feature approaches are not robust enough to offer explanations on the 51 TabArena datasets.
SpatialBench: Is Your Spatial Foundation Model an All-Round Player?
While spatial foundation models have demonstrated impressive performance on standard datasets, a critical question remains: are they truly all-round players capable of generalizing robustly across diverse downstream tasks, arbitrary viewpoints, shifting scene domains, varying input densities, and specific hardware constraints? Answering this overarching question requires a holistic assessment, yet current models are mainly evaluated on specific domains for which they were specifically designed or trained. Such evaluations are intrinsically limited by narrow paradigm coverage, limited scene domains, and arbitrary frame sampling, making it fundamentally difficult to assess their true generalization capabilities. To address this gap, we present SpatialBench, a cross-paradigm, domain-diverse benchmark for spatial foundation models with deterministic sampling. SpatialBench features unprecedented scale and rigorous deterministic design, comprising 19 datasets and 546 scenes across 5 diverse spatial domains. It comprehensively evaluates 41 models across 6 paradigms on 5 task suites under 4 different input density settings. Our extensive evaluation reveals that current models are not yet all-round players, and uncovers crucial insights for future advancement. Specifically, we demonstrate that full-context attention maximizes accuracy while bounded-memory strategies unlock long-sequence scalability. Moreover, our empirical evaluations in challenging embodied and egocentric tasks demonstrate that strict domain alignment and high data quality are far more critical to performance than simple dataset scaling. Furthermore, to address the largest data gap identified in our analysis, we go beyond evaluation by introducing a large-scale dataset, DA-Next-5M, and a strong baseline model, DA-Next, pushing the boundaries of spatial representation learning.