Scientific Workflow Automation

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9 papers in the last four weeks, up 13% on the four weeks before. 0.1% of all new papers.

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  1. Plato-Bio: verification-first biological novelty screening with temporal rediscovery and structural benchmarks

    Jul 27, 2026Stefan G. CreadoreData ProvenanceScientific Reproducibility

    Praxa Labs, an independent open-source research initiative, United States

  2. SCTA: An Agentic Framework for Stable and Interpretable Target Gene Discovery from Single-Cell RNA Sequencing

    Jul 26, 2026Shuyu Chen, Chen Zhu, Ye Zhang +3AI Agents for Scientific DiscoveryScientific Workflow Automation

    Siebel School of Computing and Data Science University of Illinois Urbana-Champaign Champaign, IL, USA · School of Information Sciences University of Illinois Urbana-Champaign Champaign, IL, USA · Novartis Biomedical Research Biomedical Research Cambridge, MA, USA +1

  3. FMRP-LEAN: A HIPAA-Compliant AI-Augmented LIMS Architecture for End-to-End Clinical Assay Workflow Optimization

    Jul 22, 2026Eva McCord, Ernest Pedapati, Zag ElSayedScientific Workflow Automation

    Division of Child and Adolescent Psychiatry, Cincinnati Children’s Hospital Medical Center, Ohio, USA · School of Information Technology (SoIT), University of Cincinnati, Ohio, USA

  4. BioSecBench-Surveillance: A Verifiable Benchmark for AI Agents in Pathogen Genomic Surveillance

    Jul 21, 2026Harmon Bhasin, Kevin Flyangolts, Dianzhuo Wang +9AI Agent EvaluationAI Agent Benchmarks

    LatchBio, San Francisco, CA · Aclid, New York, NY

  5. SciForge: An AI-Native, Multimodal Workbench for Scientific Discovery

    Jul 17, 2026SciForge Team, Zhangyang Gao, Minghao Fang +10AI Agents for Scientific DiscoveryAI Agent Governance

    SciForge Team, Shanghai Artificial Intelligence Laboratory

  6. AEGIS: Assay-Aware Protocol Validation and Runtime Monitoring for Open-Source Liquid Handling Robots

    Jul 17, 2026Priyanka V. Setty, Arvind Ramanathan, Ian Foster +1Laboratory AutomationRobotic Manipulation

    a Data Science and Learning Division, Argonne National Laboratory, Lemont, IL 60439, USA. · b Department of Computer Science, University of Chicago, Chicago, IL 60637, USA.

  7. The Industrialization of Research ; On AI-Driven Science and Its Consequences

    Jul 16, 2026Emmanuel JeannotAI-Assisted Scientific ResearchAI Governance

    Inria

  8. LQCDMaster: Agentic Scientific Computing for Lattice Quantum Chromodynamics Research

    Jul 16, 2026Haofei Gao, Tingjia Miao, Wenkai Jin +12Scientific Code GenerationHigh-Energy Physics

    School of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai, 200240, China. · Tsung-Dao Lee Institute, Shanghai Jiao Tong University, Shanghai, 200240, China. · State Key Laboratory of Dark Matter Physics, Shanghai Jiao Tong University, Shanghai, 200240, China. +6

  9. XScientist: A Git-Like Research Protocol for Long-Running Autonomous Scientific Discovery

    Jul 14, 2026Jixiang LuoData ProvenanceAutonomous Scientific Discovery

  10. NVAITC AI Scientist: A Governed End-to-End Research System -- A Hypertension GWAS Case Study

    Jul 13, 2026Eddie Huang, Ken Liao, Iven Fu +14Human-in-the-Loop AIAI Agent Governance

    NVIDIA AI Technology Center, NVIDIA Corporation · NVIDIA AI Technology Center (NVAITC), NVIDIA Corporation · Department of Medical Research, China Medical University Hospital, Taichung, Taiwan +12

  11. An Autonomous Scientific Knowledge Generation Framework for AI-Driven Scientific Discovery

    Jul 9, 2026Dibakar DattaScientific DiscoveryScientific Workflow Automation

    Department of Mechanical and Industrial Engineering New jersey Institute of Technology (NJIT), Newark, NJ 07052, USA

  12. SpaCellAgent: A Self-Evolving LLM-Based Multi-Agent Framework for Trajectory Analysis

    Jul 8, 2026Songhan Wang, Haoang Chi, He Li +6Spatial TranscriptomicsLLM Agent Orchestration

    University of Shanghai for Science and Technology · National University of Defense Technology · Hong Kong Baptist University +3

  13. ResearchStudio-Reel: Automate the Last Mile of Research from Paper to Poster, Video, and Blog

    Jul 5, 2026Lingao Xiao, Yalun Dai, Yangyu Huang +17AI-Assisted Scientific ResearchScientific Workflow Automation

    Microsoft Research · Nanyang Technological University · ♭The author and maintainer of ppt-master. +6

  14. Rethinking Scientific Discovery in the Agentic Era

    Jul 4, 2026Yining Zheng, Yuxin Wang, Jiahao Lu +27AI Agents for Scientific DiscoveryMulti-Agent Collaboration

    Shanghai Innovation Institute · Fudan University · East China Normal University

  15. A Precedent-Guided Co-Scientist for Side-Effect-Aware Drug Redesign

    Jul 3, 2026Yujin Kim, Charmgil HongMolecular OptimizationScientific Workflow Automation

    Department of Computer Science and Electrical Engineering, Handong Global University, Pohang, Republic of Korea.

  16. Automated Data Readiness for Scientific AI

    Jul 2, 2026Sean R. Wilkinson, Valentine G. Anantharaj, Jong Youl Choi +8Scientific Workflow Automation

    Oak Ridge National Laboratory, Oak Ridge, TN, USA

  17. Coding-agents can replicate scientific machine learning papers

    Jul 2, 2026Atharva Hans, Ilias BilionisCoding AgentsLLM Agent Evaluation

    School of Mechanical Engineering, Purdue University, West Lafayette, IN, 47907, USA

  18. Optimal Resource Utilization for Autonomous Laboratory Orchestrators

    Jul 1, 2026Austin McDannald, Julia Tisaranni, Howie JoressLaboratory AutomationScientific Workflow Automation

    Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA

  19. An Agentic AI Framework to Accelerate Scientific Discovery in Plant Phenotyping

    Jun 30, 2026Renan Souza, Daniel Rosendo, Kelsey Carter +6Plant PhenotypingLLM Agent Orchestration

    Oak Ridge National Laboratory, Oak Ridge, TN, USA

  20. A Self-Evolving Agentic System for Automated Generation and Execution of Biological Protocols

    Jun 30, 2026Yankai Jiang, Weiting Tang, Haoran Sun +11Scientific Code GenerationLaboratory Automation

    1Shanghai Artificial Intelligence Laboratory, Shanghai, China · 2Genoria AI, Shenzhen, China

  21. AI-Assisted Computational Reproducibility on the FABRIC Testbed

    Jun 24, 2026Komal Thareja, Paul Ruth, Berent Aldikacti +1AI Coding AgentsAI-Assisted Scientific Research

    RENCI, University of North Carolina at Chapel Hill, NC, USA · University of Massachusetts Amherst, MA, USA

  22. SP-Mind: An Autonomous Reasoning Agent for Spatial Proteomics Analysis

    Jun 23, 2026Yucheng Yuan, Yuanfeng Ji, Zhongxiao Li +1AI Agent BenchmarksTool-Using Agents

    Department of Computer Science, Stanford University, Stanford, USA · Department of Radiation Oncology, Stanford University, Stanford, USA

  23. Building Agent Harnesses for Scientific Curation from Multimodal Sources

    Jun 19, 2026Sheng Zhang, Qin Liu, Renqian Luo +9Document Information ExtractionScientific Workflow Automation

    Microsoft Research · University of California, Davis · Merck & Co., Inc., Rahway, NJ, USA

  24. Process-Reward Tactic Evolution for Long-Horizon Bioinformatics Workflows

    Jun 18, 2026Lingzhi Yang, Yubo Fan, Song Wu +1LLM Agent Skill LearningProcess Supervision

    Stony Brook University · Vanderbilt University · Brookhaven National Lab

  25. Dual-Agent Framework for Cross-Model Verified Translation of Natural-Language Protocols into Robotic Laboratory Platform

    Jun 18, 2026Hyeonna Choi, Jung Yup Kim, Hyuneui Lim +1LLM Agent OrchestrationLaboratory Automation

    Department of Bionic Machinery, Research Institute of AI Robot, Korea Institute of Machinery & Materials, 156, Gajeongbuk-ro, Yuseong-gu, Daejeon 34103, South Korea · 156, Gajeongbuk-ro, Yuseong-gu, Daejeon 34103, South Korea · Department of Nano-devices & displays, Nano-convergence Manufacturing Research Division, Korea Institute of Machinery & Materials, 156, Gajeongbuk-ro, Yuseong-gu, Daejeon 34103, South Korea

  26. Making AI Scientists Auditable from Evidence to Claim

    Jun 17, 2026Zijian Wang, Hanqi Li, Ziyue Yang +17Data ProvenanceScientific Reproducibility

    X-LANCE Lab, School of Computer Science, Shanghai Jiao Tong University, Shanghai, China · Suzhou Laboratory, Suzhou, China · Shanghai Innovation Institution, Shanghai, China +1

  27. Complexity and Scale in AI-Assisted Workflow Management: A Federated Learning Case Study

    Jun 16, 2026Komal Thareja, Hamza Safri, Rajiv Mayani +2Execution-Guided Code GenerationCode Generation

    RENCI, University of North Carolina at Chapel Hill, NC, USA · Information Sciences Institute, University of Southern California, Marina del Rey, CA, USA

  28. Agentic Publication Protocol: An Attempt to Modernize Scientific Publication

    Jun 15, 2026Sirui Lu, Xiao-Liang QiAI-Assisted Scientific ResearchScientific Communication

    1Max-Planck-Institut für Quantenoptik, Garching, Germany · 2Munich Center for Quantum Science and Technology (MCQST), Schellingstrasse 4, D-80799 München, Germany · 3Leinweber Institute for Theoretical Physics, Stanford University, Stanford, CA, USA

  29. NIMO: A Software Platform for Closed-Loop Materials Exploration with Diverse AI Algorithms

    Jun 14, 2026Ryo Tamura, Naruki Yoshikawa, Koji Tsuda +1Materials ScienceScientific Workflow Automation

    Center for Basic Research on Materials, National Institute for Materials Science, 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan · Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwa-no-ha, Kashiwa, Chiba 277-8561, Japan · Center for Green Research on Energy and Environmental Materials, National Institute for Material Science, 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan

  30. Democratizing and accelerating AI-driven pathology research through agentic intelligence

    Jun 12, 2026Jiabo Ma, Cheng Jin, Yihui Wang +19Computational PathologyAgentic Workflows

    Department of Computer Science and Engineering, Hong Kong University of Science and Technology, Hong Kong SAR, China · Department of Pathology, Nanfang Hospital, School of Basic Medical Sciences, Southern Medical University, Guangzhou, China · Guangdong Province Key Laboratory of Molecular Tumor Pathology, Guangzhou, China +9