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The I-Ching is one of the most influential texts in Chinese intellectual history, integrating divination, cosmology, and ethical reflection. While Western experimental music, most notably John Cage, has drawn on the I-Ching as a source of chance operation, such appropriations have often detached its formal mechanisms from the interpretive and philosophical processes that give the text meaning. This work, Music of Changing Lines, presents an interactive system that re-centers the I-Ching as a meaning-bearing framework rather than a neutral randomizer. Users perform Wen Wang Fa coin casting, which is accompanied in real time through probabilistic musical processes. The resulting hexagrams and changing lines are interpreted by a large language model, Gemini, in relation to the user's inquiry. This textual interpretation is then translated into a prompt for a generative music model, Lyria, producing a responsive musical realization. By situating AI as an interpretive intermediary rather than a compositional authority, the system foregrounds the I-Ching's ritual, interpretation, and participation as the primary sonic materials. Music of Changing Lines extends process-driven traditions in computer music by demonstrating how generative AI can support participatory, meaning-driven musical processes without prescribing musical structure or replacing human agency.

Causal representation learning (CRL) seeks to recover latent variables with identifiability guarantees, typically up to permutation and component-wise reparameterization under appropriate assumptions. However, identifiability does not imply interpretability: latent semantics are typically assigned post hoc by alignment with known ground-truth factors. This limitation is particularly acute in scientific time series, where underlying mechanisms are unknown and discovering interpretable structure is a primary goal. In contrast, scientific observations (such as residue-pair distances, climate indices, or process sensors) are inherently semantic, as they correspond to named physical quantities. This raises a key question: can the interpretability of observations be transferred to the identifiable latent space? We propose MOSAIC (Module discovery via Sparse Additive Identifiable Causal learning), a sparse temporal VAE that integrates temporal CRL identifiability with support recovery over observed variables. MOSAIC identifies latent variables via regime-conditioned temporal variation, and recovers for each latent a sparse set of associated observations through an additive decoder, yielding module-level interpretability. We show that ANOVA main-effect supports are identifiable under general smooth mixing functions, and provide finite-sample recovery guarantees for a tractable sparse-additive variant. Empirically, MOSAIC recovers domain-consistent variable groups across RNA molecular dynamics, solar wind, ENSO climate, the Tennessee Eastman process, and a synthetic tokamak benchmark, enabling interpretable discovery of latent mechanisms in scientific time series.

Contemporary artificial intelligence systems achieve strong performance through large-scale parameterization, retrieval augmentation, and training on extensive static corpora. Despite these advances, they continue to face limitations in persistent memory, temporal grounding, provenance, and interpretability. These challenges are especially pronounced in large language models, where experience is encoded implicitly in fixed parameters, limiting the ability to preserve, inspect, and reinterpret past interactions over time. This paper establishes a memory-centric architectural foundation for artificial intelligence in which experience is represented explicitly and persistently to support temporal grounding, provenance, and interpretability. It proposes an alternative to parameter-centric approaches by treating memory as a first-class, structured substrate for reasoning. We introduce the Dynamic Gist-Based Memory Model (DGMM), an architecture in which experience is represented as an evolving, graph-structured episodic-semantic memory. DGMM encodes experience as interconnected conceptual structures grounded in time, source, and interaction context, and defines selective, cue-conditioned recall as the mechanism for constructing working memory. A formal schema and architectural invariants are provided based on additive memory growth and recall-conditioned interpretation. The results specify properties of DGMM, including episodic persistence, locality of cue-conditioned surprise, and contextual variability without structural modification of stored memory. DGMM provides a coherent architectural theory in which memory is explicit and persistent, supporting evolving interpretation without retraining and enabling interpretable, context-aware, and temporally grounded AI systems.

Reinforcement learning (RL) has recently emerged as a promising approach for aligning text-to-image generative models with human preferences. A key challenge, however, lies in designing effective and interpretable rewards. Existing methods often rely on either composite metrics (e.g., CLIP, OCR, and realism scores) with fixed weights or a single scalar reward distilled from human preference models, which can limit interpretability and flexibility. We propose RubricRL, a simple and general framework for rubric-based reward design that offers greater interpretability, composability, and user control. Instead of using a black-box scalar signal, RubricRL dynamically constructs a structured rubric for each prompt--a decomposable checklist of fine-grained visual criteria such as object correctness, attribute accuracy, OCR fidelity, and realism--tailored to the input text. Each criterion is independently evaluated by a multimodal judge (e.g., o4-mini), and a prompt-adaptive weighting mechanism emphasizes the most relevant dimensions. This design not only produces interpretable and modular supervision signals for policy optimization (e.g., GRPO or PPO), but also enables users to directly adjust which aspects to reward or penalize. Experiments with an autoregressive text-to-image model demonstrate that RubricRL improves prompt faithfulness, visual detail, and generalizability, while offering a flexible and extensible foundation for interpretable RL alignment across text-to-image architectures.

Like visual processing, language processing is susceptible to illusions in which people systematically misperceive stimuli. In one such case--the comparative illusion (CI), e.g., More students have been to Russia than I have--comprehenders tend to judge the sentence as acceptable despite its underlying nonsensical comparison. Prior research has argued that this phenomenon can be explained as Bayesian inference over a noisy channel: the posterior probability of an interpretation of a sentence is proportional to both the prior probability of that interpretation and the likelihood of corruption into the observed (CI) sentence. Initial behavioral work has supported this claim by evaluating a narrow set of alternative interpretations of CI sentences and showing that comprehenders favor interpretations that are more likely to have been corrupted into the illusory sentence. In this study, we replicate and go substantially beyond this earlier work by directly predicting the strength of illusion with a quantitative model of the posterior probability of plausible interpretations, which we derive through a novel synthesis of statistical language models with human behavioral data. Our model explains not only the fine gradations in the strength of CI effects, but also a previously unexplained effect caused by pronominal vs. full noun phrase than-clause subjects. These findings support a noisy-channel theory of sentence comprehension by demonstrating that the theory makes novel predictions about the comparative illusion that bear out empirically. This outcome joins related evidence of noisy channel processing in both illusory and non-illusory contexts to support noisy channel inference as a unified computational-level theory of diverse language processing phenomena.

Change point detection (CPD) identifies abrupt and significant changes in sequential data, with applications in human activity recognition, financial markets, cybersecurity, manufacturing, and autonomous systems. Traditional CPD methods often face computational challenges in high-dimensional settings and typically provide limited explanations for detected changes, which can restrict their practical usability. This paper introduces a CPD framework that improves scalability and interpretability by leveraging the Sliced Wasserstein (SW) distance. Our contributions are fourfold: (1) we transform multivariate sequential data into one-dimensional scores using the SW distance, making the resulting representation compatible with existing CPD methods; (2) we analyze the distributional behavior of random slices of the SW distance and show that, under suitable assumptions, they can be approximated by a Gamma distribution, providing a principled basis for threshold calibration; (3) we propose a self-adapting online CPD algorithm that combines this SW-based score with an adaptive quantile-based threshold; (4) we introduce a model-specific framework for generating contrastive explanations for annotated change points. Empirically, our method reduces false positives by at least $48\%$ on average compared with popular online and offline CPD baselines, while maintaining competitive or superior detection performance. Code is available at https://github.com/jsve96/SWCPD_Code. At the same time, it produces interpretable change-point annotations, making it practical for deployment in high-stakes applications.

The interpretability of complex machine learning models is of paramount importance, especially in real-world high-stakes domains such as healthcare and finance. However, existing post-hoc interpretability methods suffer from inherent limitations: fragmented analytical processes, inadequate capacity to model nonlinear feature interactions, computational inefficiencies, and over-reliance on specific model architectures. To address these challenges, this paper provides a novel method - Adaptive Derivative-Ordered Random Explanation (ADORE) - that leverages first- and second-order derivatives to accommodate nonlinear model complexities, while enabling effective capture of feature-sample interactions within a unified analytical framework. ADORE integrates global feature importance with local sample contributions, precisely quantifying feature impact by capturing both magnitude and direction, and identifying critical samples influencing model decisions. Furthermore, it achieves computational efficiency through randomized singular value decomposition (SVD) and dynamic sparsity detection, making it scalable to large, high-dimensional datasets. Experiments across three data modalities - tabular, text, and image - demonstrate that ADORE outperforms existing methods such as LIME and SHAP in handling complex interactions and computational efficiency, while providing detailed and reliable explanations. To facilitate adoption and reproducibility, ADORE has been released as an open-source Python package, hosted on GitHub, enabling researchers and practitioners to readily adapt and apply our approach to their specific tasks, models, and datasets.

Large language models (LLMs) are built from structured high-dimensional objects such as token representations, weights, adaptation updates, caches, and activations, whose multilinear structure is underexploited by the conventional matrix-centric view. Tensor decompositions and tensor networks provide a principled algebraic language for this structure, yet the literature often treats them as isolated compression mechanisms. This survey organizes tensor methods for LLMs through two complementary views: a seven-stage lifecycle taxonomy covering tokenization, embeddings, pre-training, adaptation, compression, inference, and interpretability, and a component view covering embeddings, attention, and feed-forward networks. We provide unified notation and theoretical foundations, analyze tensorization strategies for individual Transformer components, and compare methods at each lifecycle stage while making differences in evaluation protocols and model scales explicit. We further connect tensor methods to neighboring efficiency techniques and probabilistic tensor networks. Finally, we synthesize open challenges and introduce $ρ_{\rm gap}$, a metric for the compression-realization gap between theoretical memory reduction and measured system-level speedup. By treating tensorization as a common structural principle, the survey provides a structured entry point to tensorized language models and clarifies when parameter savings can plausibly translate into memory efficiency, computational efficiency, or interpretability. The GitHub page dedicated to this paper is accessible at \href{https://github.com/ma-tt-a/awesome-tensor-methods-for-llms}{this https URL}.

Mechanistic interpretability of large language models lacks spatially resolved, falsifiable tools for testing whether internal components are specialized for distinct cognitive operations. We adapt subtraction analysis, the standard framework of human neuroimaging, from biological brains to perturbed transformers, and apply the same logic to both substrates in parallel. Building on the Brain-LLM Unified Model (BLUM), which showed that layer-perturbed LLaVA-1.6-Vicuna-13B error profiles match the lesion patterns of aphasic patients, we develop PRISM (Perturbation-based Regional Interpretability through Subtraction Mapping). PRISM maps the seven clinical Philadelphia Naming Test categories, subtracts error classes pairwise, and treats each perturbation seed as a subject in a group analysis with threshold-free cluster enhancement along the layer axis. We run a structurally matched analysis on 213 chronic post-stroke aphasia patients using correlation-difference lesion-symptom mapping, and replicate both sides on held-out splits. The designs match in subject dimension (seeds, patients), spatial dimension (layers, atlas-parcellated cortex) and thresholding, but the contrast operator differs: a within-subject error-proportion difference for the LLM, a between-subject correlation difference for the cortex. Both substrates recover a robust phonemic-favoring dissociation, a deep layer cluster and a frontal-perisylvian cortical cluster, both replicating; the semantic-favoring direction is a consistently signed but non-significant trend on both. PRISM thus gives a falsifiable, spatially resolved test of functional-specialization claims in transformer language models. A confirmatory ROI-level intervention (PRISM Stage 3) licensing the strongest causal-mechanism claim is left to subsequent work.

The Workshop on Trustworthy Natural Language Processing (TrustNLP), co-located with major ACL conferences since 2021, has grown from 8 proceedings papers to 41 over six editions, documenting a field-wide transition from post-hoc interpretability of static models to mechanistic understanding and proactive control of generative systems. We synthesize insights from all 144 proceedings papers, classifying them along six trust dimensions grounded in established frameworks (TrustLLM, DecodingTrust). We observe co-occurrences with capability emergence. The release of the first high-impact chat models activated all trust dimensions simultaneously, while subsequent model generations shifted focus toward truthfulness and safety alignment. Analysis from the classification study reveals that truthfulness is the fastest-growing dimension (absent in 2021-2022, comprising 37% of papers by 2025-2026), fairness remains the most consistent theme, and explainability exhibits a U-shaped trajectory; declining as post-hoc methods lost relevance but resurging in 2026 through mechanistic interpretability. A cross-venue comparison with ACL, NAACL, EACL, and EMNLP (~2K papers) in the same period shows that TrustNLP's topical distribution closely follows the field average. We identify four structural insights and conclude with actionable directions for the research community.

Interpretability methods for neural network activations span a wide cost spectrum, from cheap, training-free techniques (such as linear probes, PCA, SVD) to more expensive training-based ones (such as SAEs and activation oracles). Training-based methods are typically more powerful, in part because they leverage large activation datasets during training. This raises a natural question - do they actually surface insights that go beyond what is recoverable from the training dataset itself? To address this, we equip an LLM agent with a vector database of activations paired with their textual contexts, along with tools for manipulating activations - projecting out directions in latent space, computing activation differences and averages. The agent iteratively queries the database, forms hypotheses from the retrieved samples, and validates them by constructing linear probes. We call this method HARP, for Hypothesis-driven Agentic Retrieval and Probing. Despite not involving any training, HARP outperforms both activation oracles and SAE-based agents on concept discovery, concept detection, model steering, and secret elicitation. The training-free design also makes HARP substantially cheaper and more flexible: new datasets can be indexed on demand whenever existing ones prove insufficient. More broadly, our results suggest that current training-based methods do not yet extract insights beyond their training data, and motivate benchmarks that explicitly require interpretability methods to demonstrate such insights. We release our code at https://github.com/SriramB-98/HARP

Mechanistic interpretability often evaluates explanations by intervening on a model: swapping hidden states, patching activations, ablating components, or comparing a compressed model to the original one. These experiments are usually summarized by a point estimate, even though the evaluation may be monitored while it runs or adapted toward suspected failures. This makes it hard to tell whether a reported fidelity or patching effect is a stable causal claim or a consequence of finite sampling and evaluation choices. We introduce Certified Interventional Fidelity (CIF), a statistical layer for interventional interpretability evaluations. CIF first writes the quantity being reported as a causal estimand: an expectation of a bounded score over a stated input distribution and a stated intervention distribution. It then provides confidence intervals and anytime-valid confidence sequences for this estimand, including under adaptive intervention sampling via bounded mixture importance weighting. We instantiate CIF with Hoeffding-style sequences and variance-adaptive betting sequences, the latter reducing certification cost by 10-30x in our experiments. On MNIST abstractions and GPT-2 Small IOI circuits, CIF certifies high-fidelity claims, shows when apparent method differences are not statistically supported, and makes sensitivity to the intervention distribution explicit.

This article offers a comprehensive overview of mechanistic interpretability, an emerging field that seeks to reverse-engineer the internal algorithms of modern neural networks. While traditional explainable AI methods often stop at surface-level input-output correlations, this approach directly addresses the opaque "black box" nature of machine learning models, which is essential for ensuring safety and auditability in high-stakes deployments. The paper provides a detailed examination of Transformer circuit analysis, exploring how internal components like the residual stream, attention mechanisms, and induction heads drive complex tasks and in-context learning. It subsequently tackles the core challenge of superposition and polysemanticity, demonstrating how tools like Sparse Autoencoders (SAEs) and transcoders can decompose tangled network activations into distinct, human-interpretable features. Furthermore, the paper explores methods for actively controlling and modifying model behavior through steering vectors and causal interventions. Finally, it connects these mechanistic insights with neurosymbolic AI frameworks designed to translate neural representations into explicit, executable logical rules.

Neural Quantum States (NQS) are a remarkably expressive class of variational ansätze for quantum many-body wavefunctions, yet little is understood about their internal mechanisms: trained on variational objectives alone, how do NQS accurately capture physical observables that they have never been explicitly optimized for? In this work, we present a systematic approach to analyze the internal activations of NQS using sparse autoencoders. We extract features from the residual stream and demonstrate that these features strongly correlate with physical observables such as order parameters, staggered magnetization, and half-chain correlators, across both ground state representation and real-time dynamics. Remarkably, the discovery of these features is entirely unsupervised, with no physical labels provided. We further establish that such features causally affect the corresponding observables predicted by NQS, by showing that targeted, post-training intervention on a \textit{single} feature smoothly and monotonically steers the corresponding observable, while leaving the variational energy nearly unchanged. These results demonstrate that NQS are not merely functional approximators, but encode rich, interpretable internal representations of physical information. Our approach provides both a diagnostic and an intervention tool for NQS, and serves as a foundation for using mechanistic interpretability towards more reliable, transparent NQS.

Mechanistic interpretability has produced a rich inventory of component-level analyses that characterise what neural-network components encode and how they interact. Their outputs, however, are not easily reusable: selectivity tables, circuit diagrams, and feature lists remain locked in per-study notebooks - non-composable, not queryable in natural language, and not directly actionable for downstream audit or intervention. We study the representation layer that sits between these analyses and downstream use as a bottleneck that can be evaluated independently, and introduce Manifestation Units, a typed tuple protocol (E, S, R, D, G) extended with attention-head primitives (T) for transformer architectures, organising per-component statistics into structured fields populated automatically and queried through hybrid retrieval. Instantiated across generative vision (beta-VAE), discriminative vision (CNN), and language (GPT-2), the protocol supports two findings: typed structure substantially outperforms unstructured baselines on retrieval, and CNN filters retrieved by the schema satisfy causal sufficiency and necessity criteria under matched-budget controls. The schema absorbs attention-head primitives without modification, set-recovers known IOI circuit members under retrieval-budget-matched controls, and reveals an irreducible two-field core (S+R) with remaining fields either redundant or actively interfering. We present this as schema infrastructure for mechanistic interpretability rather than frontier-scale validation.

Artificial intelligence is transforming our capability to solve biological challenges. In dimensionality bottleneck regimes exacerbated by high-dimensional biological data, neural networks force distinct concepts into the lower dimensions known as superposition. Although this superposition is widely known to hinder interpretability, its impact on corrupting the geometry of latent spaces remains critically overlooked. Here, we utilized sparse autoencoders (SAEs) trained on over 100,000 multiplexed images of patient-derived Parkinson's disease and healthy neurons to resolve superposition. This approach bypasses the mathematical non-uniqueness of feature attribution by shifting to interpretable latent representation analysis. We theoretically and empirically demonstrate that superposition contaminates representational metric spaces, and thereby SAEs successfully recover geometric fidelity. By treating these geometrically purified representations as single-cell state vectors, we adapted single-cell RNA sequencing (scRNA-seq) data analysis methodologies directly to the image domain. Finally, we introduce GW-map, utilizing Gromov-Wasserstein optimal transport to align these image representations with authentic scRNA-seq data de novo. This coupling reconstructs hierarchical neuronal pathology pathways such as Calcium-AIS scaffold, without reference spatial transcriptomics, establishing a scalable foundation for spatial biology. Code is available at https://github.com/jijihihi/Bio\_superposition

Foundation models for structural biology have achieved remarkable performance in predicting biomolecular structure and show promise for the design of proteins and small molecules. Yet understanding which internal features drive their outputs remains challenging. Standard sparse autoencoders (SAEs), effective on transformer-style sequence embeddings, do not transfer cleanly to pairformer-like architectures: naively operating on pairwise representations yields a quadratic blow-up of features and obscures concepts distributed jointly across sequence and pair representations. We introduce PairSAE, which summarizes pairwise tensors via an N-mode SVD into token-wise interaction roles, then uses a sparse autoencoder to learn a shared set of token-level features that decode into both sequence and pair representations. Evaluated on Boltz-2 activations for PLINDER protein-ligand complexes, PairSAE yields interpretable features that align with UniProt annotations and predict Boltz-2 affinity values. These results indicate that PairSAE links the latent space of foundation models for structural biology to interpretable structural concepts, clarifying what the model "knows" while avoiding pairformer-induced pitfalls that limit conventional SAEs.

High-stakes reasoning tasks necessitate transparent and verifiable workflows, yet conventional single-model large language models (LLMs) often struggle with hallucination and low interpretability under zero-shot paradigms. To address this general AI challenge, we propose a Multi-Agent Audit Framework that simulates a collaborative, multi-step verification process. We empirically validate this architecture in the sensitive domain of clinical mental health screening using a modular LangChain workflow. Our framework decomposes the reasoning process into a Perception Agent, Knowledge Retrieval-Augmented Generation (RAG), Chain-of-Thought (CoT) clinical inference, and a critical Audit verification stage. We evaluated this framework on the DAIC-WOZ dataset using locally deployed open-source models. Experimental results demonstrate that our multi-agent pipeline significantly outperforms single-agent baselines, reducing the Mean Absolute Error (MAE) for PHQ-8 depression severity prediction from 5.35 to 5.02. By exposing cross-agent validation traces, the framework mitigates reasoning drift and provides highly interpretable diagnostic rationales, offering a generalizable paradigm for reliable AI-assisted decision support beyond isolated model scaling. We make data and code open access on GitHub for replicability.

Neural networks learn features that reflect the hierarchical, multi-scale structure of natural data. Synthetic datasets used to evaluate interpretability methods typically lack this structure, limiting their value as realistic toy models. To close this gap, we introduce a family of synthetic datasets consisting of hierarchical functions defined on critical mean-field percolation clusters embedded in a high-dimensional data space. The percolation data consists of sparse, low-dimensional fractal clusters with a power-law size distribution. Latent variables modeling a taxonomic hierarchy generate each data point's target value. The data model is analytically tractable with known critical exponents that fix its properties without requiring hyperparameter tuning. We leverage a mapping between percolation clusters, random trees, and additive coalescence to propose an almost linear-time algorithm to jointly sample a random tree and its hierarchical latent decomposition, enabling data generation at arbitrary scale. Using probing experiments, we find that the model's ground-truth latent variables can be linearly decoded from neural network activations. Together, sparsity, self-similarity, power-law statistics, and analytical tractability make critical percolation a principled testbed for interpretability research.

Sparse autoencoders (SAEs) are increasingly used to extract interpretable features from language models (LMs), yet a central question remains: when can an SAE-based explanation be treated as a faithful view of an underlying frozen LM We study this through a post-hoc generalization framework that certifies the LM via a sparse proxy, obtained by replacing a native hidden activation with its pretrained SAE reconstruction. Our framework derives an upper bound on the base model's expected risk using four measurable quantities: proxy risk, SAE reconstruction gap, concept-pool mismatch, and sparse complexity. We interpret this certificate as an operational criterion for explanatory faithfulness. In particular, a non-vacuous bound indicates that the extracted sparse features retain meaningful predictive information, while small reconstruction and mismatch errors indicate that the proxy remains behaviorally close to the original model. Empirically, we show that the bound becomes non-vacuous on GPT-2 Small, Gemma-2B, and Llama-3-8B at practical sample sizes. A detailed layerwise analysis of Llama-3-8B reveals a strong depth dependence, with later layers becoming much easier to certify, associated with both stronger local fidelity and weaker downstream error amplification. Finally, through feature-shuffling ablations, we show that the decomposition distinguishes genuine semantic alignment from mere statistical sparsity, providing a useful diagnostic for when SAE-based explanations become less reliable.

Lung cancer is the leading cause of cancer-related mortality, with approximately 2.5 million new cases and 1.8 million deaths annually, making reliable diagnosis a clinical priority. Although deep learning models have achieved strong performance in lung cancer classification, evaluation has largely focused on predictive accuracy, leaving their decision-making processes insufficiently examined. This study compares three architecturally distinct models: a Convolutional Neural Network (CNN), a pretrained ResNet50, and a Vision Transformer (ViT), trained on the IQ-OTH/NCCD lung cancer CT dataset. Local Interpretable Model-Agnostic Explanations (LIME) were applied to investigate model reasoning. In addition to standard performance metrics, a dual-correlation framework was introduced to measure both prediction agreement and explanation agreement across model pairs. All three models achieved strong classification performance, with ResNet50 attaining 98.61% accuracy, CNN 97.91%, and ViT 93.75%, while all achieved ROC-AUC scores of 0.99. Prediction correlations exceeded 0.99 across all model pairs, indicating highly consistent outputs. However, LIME explanation correlations remained below 0.26, revealing substantial differences in the image regions used to reach those predictions. Analysis of misclassified samples further identified a consistent spatial pattern: incorrect predictions were associated with attention outside the lung parenchyma, whereas correct predictions focused primarily within lung regions. These findings demonstrate that prediction agreement is a poor proxy for reasoning consistency, and that interpretability evaluation must be treated as an independent validation criterion alongside predictive performance in clinical AI systems.

Behavioral audits of Large Language Models on moral prompts measure what the model says, not the internal computation producing it. We use Transluce, an AI-driven mechanistic-interpretability platform, to examine LLaMA 3.1-8B-Instruct on 54 moral prompts in four batteries: 17 dilemmas, policy, and meta-ethical questions (B1); 6 role-playing scenarios (B3); and a controlled trolley contrast varying the switching mechanism with people fixed (B4, 15 prompts) or identity attributes with mechanism fixed (B5, 16 prompts). Two complementary metric families, five cluster-level metrics and a six-metric neuron-level panel, converge on a Situational Anchor Effect: domain-specific representations dominate the top of the activation list across every battery. The model's ethics-labeled capacity stays essentially constant; its salience (rank, priority, top-of-list presence) is highly sensitive to the interpretive frame the prompt selects. The B4-vs-B5 contrast confirms the model attends to whichever surface feature varies: aggregate ethics metrics are indistinguishable, but the dominant non-ethics distractor mirrors the design. A multi-temperature audit identifies a candidate ethics neuron (L16/N3837) stable across temperatures; a cross-model behavioral proxy on two frontier models yields preliminary evidence of divergence in self-reported moral focus, consistent with an Alignment Wrapper in which RLHF re-orders surface text without removing underlying domain-first frames. We unify these as Frame-Conditioned Moral Computation: the prompt's surface vocabulary selects a feature manifold, and the moral conclusion is downstream of that selection. Behavioral alignment must be supplemented by Mechanistic Alignment: a research program asking whether ethics-related features can be shown causally privileged under controlled frame variation, not merely loud in the explanation.

This study proposes an overall deep learning architecture for multi-class classification of plant diseases from high-resolution leaf imagery, with a particular interest in investigating the behavior of ResNet-50 and a hybrid ResNet + Vision Transformer (ViT) design. A specially gathered image database with 15,200 training images and 3,800 validation images spanning 38 classes across multiple crops, including tomato, apple, grape etc. were subjected to preprocessing steps such as resizing, normalization, and data augmentation to enhance model robustness. Multiple architectures, including ResNet-50, MobileNetV2, and EfficientNet-B0, were trained and compared with the hybrid ResNet + ViT model. All models were fine-tuned using the AdamW optimizer and cross-entropy loss, with early stopping applied to prevent overfitting and ensure generalization. Furthermore, interpretability techniques such as Grad-CAM and saliency maps were implemented to indicate disease-relevant regions, while segmentation-based analysis was performed to identify the affected parts of a leaf. For every one of the considered architectures, ResNet-50 led to the highest accuracy of 98.74%, whereas the hybrid ResNet + ViT model achieved a competitive accuracy of 98.58%, showing that the hybrid architectures were effective in capturing both local and overall information. The experimental results showcase the promise of transformer-based models to achieve highly accurate, interpretable, and computationally efficient computer-based multi-class multi-disease classification systems, providing helpful assistance for cultivation management practices as well as for precision farming.

Generative AI emulators are increasingly used in scientific domains where we already have strong theory, benchmarks, and physical intuition. This raises a central evaluation and interpretability question: when a foundation-style model can reproduce known continuum dynamics, what internal mechanism supports that behavior, is the internal behaviour consistent with known physics, and how does it relate to where the emulator succeeds or fails? We investigate a cross-domain foundation model for continuum dynamics, Walrus by Polymathic, using mechanistic interpretability guided by physical principles. We apply a sparse autoencoder (SAE) to probe a selected layer, and address the practical challenge of triaging a large feature set (over 20,000) using enstrophy as a physically grounded metric. As a deliberately simple testbed, we focus on shear flow and compare feature recruitment across multiple shear-flow setups, i.e. parameter values in the numerical simulation. Across setups we find evidence of piecewise consistency, with subsets of features recurring in similar roles, but this structure is intermittent and does not map cleanly onto standard physical decompositions. In parallel, direct comparisons between numerical simulation and the emulator reveal systematic output-level discrepancies, including regimes where energy/structures become too diffuse or too localized. We connect parts of these discrepancies to changes in specific SAE feature usage. Our work highlights open questions for scientific foundation models: how to robustly prioritize mechanistically meaningful features, how to separate stable structure from analysis artifacts (including single-layer and SAE limitations), and how to use established benchmarks to decide when "different" internal representations are genuinely informative rather than merely effective.

This research introduces a framework for incorporating Concept Bottleneck Models (CBMs) into 3D generative architectures to address the inherent 'semantic gap' in deep geometric learning. As deep models become central to 3D content creation, explainability shifts from a peripheral feature to a fundamental requirement for trust and accountability in safety-critical domains such as healthcare and manufacturing. CBMs provide an intrinsic interpretability solution by constraining latent representations to align with human-defined concepts, yet their application to unstructured 3D data remains largely unexplored. We design, implement, and validate a formal 3D-CBM architecture that maps raw geometric inputs, including point clouds and meshes, into a multi-tiered taxonomy of interpretable primitives and functional attributes. The framework further identifies strategic datasets, such as PartNet and ShapeNet, specialized for concept-based supervision. Experimental results from a 3D part-manipulation proof-of-concept experiment demonstrate the framework's efficacy, achieving a concept prediction accuracy of 88.8% and a Chamfer Distance of 0.0115. Critically, the model enables precise test-time intervention, allowing for the interactive correction of structural errors. This work establishes a foundation for semantically-steerable 3D generation and invites further exploration into collaborative human-in-the-loop design systems.

World models are now built on substantially different computational substrates. Latent recurrent state-space models such as PlaNet and the Dreamer family compress observations into recurrent states; token-based models such as IRIS quantize observations into a learned codebook and predict autoregressively with a transformer; and joint-embedding predictive architectures such as I-JEPA predict in a learned latent space with no pixel decoder. The interpretability methods applied to these models, including probing, activation patching, sparse autoencoders, and surprise analysis, share a common set of primitives, yet they are re-implemented from scratch for each architecture because existing hook-and-cache tooling assumes a transformer language model with no notion of actions, environment steps, or imagined rollouts. We argue that this fragmentation reflects the tooling rather than the models, and that the shared structure of world models is captured by a small typed interface. We present WorldModelLens, an open-source interpretability substrate organized around a capability-typed adapter: every model implements four required methods (encode, transition, initial state, sample) and declares a set of optional heads (decode, reward, continue, actor, critic) through an explicit capability descriptor, so that reinforcement-learning and self-supervised world models are first-class without either imitating the other. A single hook and cache layer exposes time-indexed activations, imagination rollouts, and intervention replay over this interface, allowing each analysis to be written once.

Purpose - Quotation error refers to the inconsistency between cited information and its original source. This phenomenon leads to a series of negative impacts, such as misinterpretation of the original research, undermining the academic community's collective understanding of relevant issues, and weakening the accuracy and fairness of the citation-based academic evaluation system. Existing studies have shown that quotation error is prevalent in the academic community; moreover, manual verification of quotation error is not only labor-intensive but also inefficient. Therefore, this paper proposes the task of 'automated detection of quotation errors'. Methodology - Adopting a large language model (LLM)-based approach, this paper improves detection performance from two aspects on the basis of existing research: first, employ the fine-tuning approach for LLMs to detect quotation errors; second, incorporating full-text data of the cited literature into dataset construction, and exploring the optimal scheme for building such datasets by comparing three types of full-text integration methods. Based on this, this paper further uses the TokenSHAP tool to conduct interpretability experimental analysis on the model's prediction results. Findings - The fine-tuning approach for LLMs has improved the performance in detecting quotation errors. Among the different methods for incorporating full-text information, the approach based on using the source abstract yielded the best performance. Originality - The fine-tuning approach for large language models (LLMs) is applied to the task of automated detection of quotation errors, and interpretability analysis is conducted on the model's output results.

Sparse Autoencoders (SAEs) are widely used for mechanistic interpretability in large language models, yet their formulation assigns each latent feature a single decoder direction, implicitly assuming features to be one-dimensional. We show that this assumption mismatches with the multi-dimensional structure of model features, provably inducing feature splitting through two distinct mechanisms. Geometrically, reconstructing a feature of intrinsic dimension $d_i \ge 2$ to error $\varepsilon$ with single-direction decoders forces a number of atoms that is exponential in $d_i$. From an end-to-end optimization perspective, this splitting is not merely possible but actively preferred. We prove that there exists a continuous path from the true $d_i$-dimensional basis to a strictly lower risk of the $\ell_1$-regularized SAE objective, whose descent directions drive any trained dictionary into that exponential regime. A single coherent feature is therefore fragmented across many near-collinear latents, producing spurious multiplicity and obscuring the intrinsic geometry. Motivated by this, we introduce Subspace-Aware Sparse Autoencoders (SASA), which replace single-vector decoders with learned decoder subspaces, enforce block sparsity via Top-$s$ group gating, and adapt each group's effective rank with a nuclear-norm regularizer. We then show that once the block size satisfies $r \ge d_i$, a single group not only can represent the entire feature slice but is the global minimizer of the SASA objective. This consolidation yields a sample complexity polynomial in $d_i$ rather than exponential -- a decisive advantage given that every training activation costs an LLM forward pass. Empirically, on GPT-2 and Mistral-7B, SASA reduces feature splitting and absorption, improves monosemanticity and interpretability, and matches or exceeds standard SAEs while training on roughly half the token budget.

Advances in machine learning and computational power have unlocked the predictive potential of the human genome, yet biologists now demand that these models also elucidate the underlying biological mechanisms. While interpretable machine learning (IML) techniques have been increasingly applied to bridge this gap, there has been a pervasive reliance on anecdotal validation: the vast majority of research relies on a single IML method and reports only isolated successful instances. Through a benchmarking study on transcription factor binding, we demonstrate the risks of current practices. We show that different IML methods can often (1) yield contradictory explanations for the same predictions, (2) fail to localize known regulatory motifs, and (3) fail to faithfully reflect the model's internal decision process. In light of this, we argue for a validation framework analogous to clinical trials: just as trials require rigorous design and adverse-event reporting, genomic interpretability must move beyond cherry-picked plausibility toward systematic assessment of consistency, faithfulness, and biological validity. To facilitate this, we propose a tiered framework to guide rigorous evaluation and reporting of genomic IML methods.

Machine learning is increasingly used in mathematical discovery, but in mathematics the desired output is often not a prediction itself, but an explicit construction that can be checked independently. We study this setting through the zeta map on Dyck paths, a classical bijection in the combinatorics of the q,t-Catalan numbers. We train a deliberately small one-layer, one-head encoder-decoder transformer on this map and analyze its learned computation using mechanistic interpretability tools, including decoder cross-attention analysis, linear probing, and causal intervention. The analysis reveals a level-based mechanism: encoder representations make path levels linearly accessible, while the decoder selects and traverses input positions in a structured way. Translating these signals into combinatorics leads to the scaffolding map, an explicit peak-centered traversal algorithm for Dyck paths. We prove that this algorithm agrees with the zeta map, modulo a reversal convention in the labeling. This gives a controlled example of AI-assisted mathematical discovery in which mechanistic interpretability turns model behavior into a precise, human-verifiable combinatorial algorithm.