Clinical Information Extraction

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11 papers in the last four weeks, against 2 the four weeks before. 0.1% of all new papers.

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  1. Can large language models unlock discrete data in ophthalmic diagnostic reports?

    Sep 30, 2026Umair A. Zaidi, An-Lun Wu, Wei-Chun Lin +2Document Information ExtractionClinical Information Extraction

    Division of Informatics, Clinical Epidemiology and Translational Data Science, Oregon Health & Science University, Portland, OR · Casey Eye Institute, Department of Ophthalmology, Oregon Health & Science University, Portland, OR · Department of Ophthalmology and Visual Sciences, University of Illinois Chicago, Chicago, IL

  2. Comparison of techniques for fine-tuning open-weight models for entity extraction from radiology reports

    Sep 30, 2026Aawez Mansuri, Kush Mehta, Mohammadreza Chavoshi +10Supervised Fine-TuningSynthetic Data Generation

    Department of Radiology and Imaging Sciences, Emory University School of Medicine, Atlanta, GA, USA · Department of Computer Science, Emory University, Atlanta, GA, USA

  3. Overview of BioASQ 2026: The fourteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

    Sep 30, 2026Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara +18Biomedical QAClinical Information Extraction

    National Center for Scientific Research “Demokritos”, Athens, Greece · Barcelona Supercomputing Center, Barcelona, Spain · Lomonosov Moscow State University, Russia +6

  4. Structure vs. Chain-of-Thought: Evaluating LLM Criteria Extraction for Depression Severity

    Sep 30, 2026Xinkai ChenDepression DetectionCoT Reasoning

    Independent Researcher

  5. Unknown is not normal: separating language-model extraction from rule-based decision logic for clinical risk scores

    Sep 28, 2026Nicolás Vera ZúñigaClinical Decision SupportLearning with Missing Data

    Independent Researcher, Chile

  6. EviStreams: Human-in-the-Loop AI Data Extraction for Systematic Reviews in Medicine

    Sep 23, 2026Sai Karthik Kosuri, Ankita Shashikant Bhosale, Michael Glick +2Document Information ExtractionHuman-in-the-Loop AI

    Center for Integrative Global Oral Health (CIGOH), Penn Dental Medicine, University of Pennsylvania · Department of Computer and Information Science, University of Pennsylvania

  7. Integrating knowledge from case reports: a medical ontology based multimodal information system with structured summary

    Sep 17, 2026Shuyu Guo, Lan Huang, Yichen Liu +2Multimodal IRRare Disease Diagnosis

    College of Computer Science and Technology Jilin University Changchun · College of Software Jilin University Changchun · Department of Laboratory Medicine Sichuan Provincial People’s Hospital, School of Medicine, University of Electronic Science and Technology of China Chengdu

  8. SNOMED CT Concept Recommendation from Masked Clinical Context

    Sep 15, 2026Ali NooriAutomated Medical CodingClinical Information Extraction

    Informatics and Analytics, University of North Carolina Greensboro Greensboro, North Carolina, USA

  9. Anchoring Clinical Events in Time: UID-Preserving Multimodal Reconstruction and Source-Grounded Adjudication

    Sep 14, 2026Sayantan Kumar, Nicolas Grimaldi, Jack Cummins +1Multimodal GroundingDocument Information Extraction

    National Library of Medicine, National Institutes of Health, USA · Princeton University, USA

  10. Meddies-PII: A Multilingual Framework for Personally Identifiable Information Extraction in Clinical De-identification

    Sep 11, 2026Linh Uyen Le, Ho Dinh Tri, Christian Hoang +1Synthetic Data GenerationClinical Information Extraction

    Meddies AI, Vietnam

  11. SIFTING: A Novel LLM-Based Framework for Structured and Transparent Information Extraction from Clinical Free-Text Reports, with Application to Tumor Staging in Lung Cancer

    Sep 7, 2026Mirco Hess, Gerben van Veenendaal, Joris Wakkie +5Clinical Information ExtractionLLM Information Extraction

    Axana B.V., Plantage Kerklaan 18-0, Amsterdam, 1018 TB, North Holland, Netherlands · University College London Hospitals NHS Foundation Trust, London, United Kingdom · Mid & South Essex NHS Foundation Trust, Essex, United Kingdom +2

  12. Improving Information Extraction with Learned Queries

    Aug 31, 2026Omar Sharif, Soroush Vosoughi, Nikhil SinghClinical Information ExtractionAutomatic Prompt Optimization

    Department of Computer Science Dartmouth College

  13. From Analytics to Tumor Boards: An Evidence-Linked Multi-Agent Workflow for Oncology Feature Extraction

    Aug 29, 2026Daniel Kang, Michelle Hu, Soorya Ram Shimgekar +12Document Information ExtractionClinical Information Extraction

    Nimblemind · Independent Researcher · School of Interactive Computing, Georgia Institute of Technology +5

  14. Characterizing Treatment-Context Medication Evidence Across Clinic Notes and Structured EHR Medication History

    Aug 3, 2026Mingyang Jiang, Congning Ni, Weixin Liu +1HealthcareClinical Information Extraction

    Vanderbilt University, Nashville, TN, USA · Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, USA

  15. A Multi-Agent System for Autonomous, Fine-Tuning-Free Clinical Symptom Detection: Development and Validation Study

    Jul 14, 2026Cameron Cagan, Pedram Fard, Jiazi Tian +3Multi-Agent LLM SystemsMedical Diagnosis

    Department of Medicine, Massachusetts General Hospital, Boston, MA, USA · Department of Biomedical Informatics and Medical Education, University of Washington, WA, USA

  16. Finding H. pylori in the Fine Print: Evidence-Linked Multi-Agent Case Finding from Gastric Biopsy Reports

    Jul 7, 2026Yufan Wang, Anit Kumar Sahu, Yan Fei Ng +8Computational PathologyClinical Information Extraction

    Nimblemind.ai, USA · Independent Researcher · Department of Anatomical Pathology, Singapore General Hospital, Singapore +2

  17. Reconfigurable Radiology Labels Without Relabeling

    Jul 6, 2026Jean-Benoit Delbrouck, Dave Van Veen, Akash Pattnaik +4Chest X-Ray ClassificationMulti-Label Classification

    HOPPR

  18. Dynamic Bidirectional Pattern Memory: A Production-Scale Empirical Characterisation of Inference-Time Gating in Clinical NLP

    Jul 1, 2026Ali H. Lazem, William TeahanLLM InferenceClinical Information Extraction

    School of Computer Science and Engineering, Bangor University, Bangor, Gwynedd, LL57 2DG, United Kingdom · University of Thi-Qar, Nasiriyah, 64001, Iraq

  19. Knowledge-augmented Agentic AI for Mental Health Medication Information Seeking

    Jun 24, 2026Huizi Yu, Jian Liu, Wenkong Wang +10KG ConstructionHealthcare

    Department of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China · Department of Psychiatry, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China · School of Control Science and Engineering, Shandong University, Ji’nan, Shandong, China +5

  20. VISTA Architect: A graph database-oriented health AI system demonstrated in multidisciplinary tumor boards

    Jun 21, 2026Tuomo Kiiskinen, Jason Fries, Philip Adamson +7HealthcareClinical Decision Support

    Department of Biomedical Data Science, Stanford University School of Medicine · Department of Medicine, Stanford University School of Medicine

  21. Clinical Term Extraction using Open-Source Small Language Models

    Jun 19, 2026Noah Marchal, William E. Janes, Mihail Popescu +1Small Language ModelsClinical Information Extraction

    University of Missouri, Columbia, Missouri, USA · Department of Occupational Therapy; University of Missouri, Columbia, Missouri, USA

  22. Prompt, Plan, Extract: Zero-Shot Agentic LLMs Workflows for Lung Pathology Extraction from Clinical Narratives

    Jun 18, 2026Aman Pathak, Cheng Peng, Mengxian Lyu +8Computational PathologyZero-Shot Learning

    Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA · Division of Pulmonary, Critical Care and Sleep Medicine, Department of Medicine, College of Medicine, University of Florida, Gainesville, FL, USA · College of Nursing, Florida State University, Tallahassee, FL, USA

  23. Configurable Clinical Information Extraction with Agentic RAG: What Works, What Breaks, and Why

    Jun 17, 2026Osman Alperen Çinar-Koraş, Marie Bauer, Sameh Khattab +7Clinical Information ExtractionAgentic RAG

    Institute for Artificial Intelligence in Medicine (IKIM), University Medicine Essen, Essen, Germany · Faculty of Computer Science, University of Duisburg-Essen, Essen, Germany · Department of Cardiology and Vascular Medicine, University Hospital Essen, Essen, Germany +3

  24. Language Models as Interfaces, Not Oracles: A Hybrid LLM-ML System for Pediatric Appendicitis

    Jun 17, 2026Soheyl Bateni, Maryam AbdolaliMedical DiagnosisClinical Decision Support

    K. N. Toosi University of Technology, Tehran, Iran

  25. PVminerLLM2: Improving Structured Extraction of Patient Voice via Preference Optimization

    Jun 15, 2026Samah Fodeh, Linhai Ma, Ganesh Puthiaraju +7HealthcareClinical Information Extraction

    Department of Emergency Medicine, Yale School of Medicine, 464 Congress Ave, 06519, CT, USA · Department of Social and Behavioral Sciences, Yale School of Public Health, 60 College Street, 06520, CT, USA · Division of Research, Texas State University, 601 University Dr., 78666, TX, USA

  26. sebis at CRF Filling 2026: A Two-Stage Local LLM Pipeline for Medical CRF Filling

    Jun 11, 2026Katharina Sommer, Tristan Till, Florian MatthesLLM GroundingPrivacy-Preserving Language Models

    Technical University of Munich, TUM School of Computation, Information and Technology

  27. eCREAM-MedCorpus A Large-Scale Corpus of Clinical Notes for Italian

    Jun 10, 2026Tiziano Labruna, Guido Bertolini, Pietro Ferrazzi +1Document Information ExtractionClinical Information Extraction

    Fondazione Bruno Kessler, Trento, Italy · Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Milan, Italy · University of Padua, Padua, Italy

  28. Curation of a Cardiology Interface Terminology for Highlighting Electronic Health Records using Machine Learning

    Jun 6, 2026Mahshad Koohi Habibi Dehkordi, Shuxin Zhou, Yehoshua Perl +6Clinical Information ExtractionElectronic Health Records

    Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA · Department of Computer Science, St.Francis College, Brooklyn, NY, USA · Department of Informatics, New Jersey Institute of Technology, Newark, NJ, USA +5

  29. Automatic Extraction of Structured Information from Brain MRI Reports Using an Open-Weight Large Language Model

    Jun 5, 2026Kaouther Mouheb, Amos Pomp, Antoine Manenti +9Few-Shot PromptingClinical Information Extraction

    Department of Radiology & Nuclear Medicine, Erasmus MC, Rotterdam, the Netherlands · Department of Epidemiology, Erasmus MC, Rotterdam, the Netherlands · Department of Electrical and Electronics Engineering, ENSEEIHT, Toulouse, France +3

  30. Measuring the sensitivity of LLM-based structured extraction to prompt, model, and schema choices in clinical discharge summaries

    Jun 4, 2026Martin MurinPrompt SensitivityClinical Information Extraction

    DryLabz GmbH, Basel, Switzerland