Counterfactuals

Graph Neural Networks (GNNs) achieve strong predictive performance on graph-structured data across domains such as chemistry, biology, and network analysis, yet they provide no intrinsic explanation of their predictions. This limits their adoption in high-stakes and safety-critical settings. Counterfactual explanations address this by revealing the minimal structural modifications that would change a model's prediction. On graphs, however, such a modification is hard to produce. The search space is discrete and combinatorial, and a valid answer must respect categorical node and edge types together with domain rules such as chemical valency in the case of molecular graphs. Existing explainers give up one of two things. Either edits are not held on the data manifold, or the search does not span the full edit space. We propose Graph Diffusion Counterfactual Explanation via Inversion (GDCE-I), which gives up neither. A discrete denoising diffusion model with a novel discrete inversion scheme enables distribution-aware edits leveraging the whole domain edit space. We further address the incomplete and inconsistent evaluation of graph counterfactuals by deriving a framework of explanation desiderata and applying it to every method under one shared protocol. Across four benchmarks, GDCE-I outperforms related work by a large margin on the defined framework. For the molecular domain, we further qualitatively show that GDCE-I attains interpretable in-distribution solutions.

Prompted attribute agreement is widely used as evidence of text-to-music controllability, yet a requested attribute may occur simply because it is already common in the model's output distribution. We introduce a matched counterfactual evaluation that separates target occurrence from instruction-attributable control. Each family contains a neutral input that omits the scored attribute and two otherwise matched inputs that swap the requested target. All three are rendered through frozen native-interface adapters with a shared seed. Applied to global key and beat grouping in three open systems, this design changes the empirical conclusion. ACE-Step 1.5 and Stable Audio 3 Medium exhibit substantial key control, whereas LeVo2 does not. For beat grouping, the same models redirect toward the rare three-beat target, but high four-beat agreement is largely inherited from neutral outputs: Stable Audio 3 produces four-beat grouping in 0.97 of neutral cases but only 0.56 under its explicit four-beat treatment. Off-attribute placebos, external recognizer validation, blind expert annotation, and multi-seed sentinels support the attribution. When targets have unequal output priors, agreement describes what a model produced, while matched neutral and target-swap contrasts test whether the instruction changed it.

Driving world models are often interpreted as counterfactual simulators for observed driving episodes: given a factual driving log, they are asked what would have happened under an alternative ego action. In this paper, we identify a fundamental mismatch between this goal and direct action-conditioned prediction. The direct prediction uses the shared history and the alternative action but not the factual continuation observed after that history. It can therefore generate a plausible future without preserving what actually happened in this episode. We formalize this gap using the causal recipe of abduction, action, and prediction and study it in a setting with a short time horizon, where the alternative ego action does not alter how surrounding agents evolve. To make the gap measurable, we construct a controlled simulation benchmark with factual outcomes and matched counterfactual outcomes. Across two representative world models, direct predictions fail to match the counterfactual ground truth, supporting our analysis. As a constructive check of this analysis, we introduce a deliberately simple, training-free pipeline that moves observed evidence into the counterfactual view and lets the frozen model complete what remains unknown. Even this simple construction raises the overall recovered fraction substantially and reduces perceptual distance to the matched counterfactual on both models. We hope this work draws attention to this gap and motivates better counterfactual prediction methods for driving world models.

Explainability is essential for deploying deep learning models in high-stakes medical applications. Existing explainability methods for volumetric imaging predominantly operate in voxel space, overlooking the structured representations introduced by recent advances in 3D scene modeling. We present COGENT (Counterfactual Gaussian Explanations), a framework that generates counterfactual explanations directly in the parameter space of Gaussian-based volumetric representations. Built upon MedGS and the Sybil lung cancer risk prediction model, COGENT optimizes selected Gaussian primitives through a differentiable rendering pipeline, enabling gradients from the downstream predictor to identify representation components that most influence model decisions. Unlike conventional pixel- or voxel-level attribution methods, our approach formulates explainability as a counterfactual optimization problem over an explicit 3D scene representation, producing sparse and spatially localized explanations while preserving anatomical consistency. We evaluate COGENT on lung CT scans using quantitative comparisons with existing explainability methods together with qualitative analysis by medical experts. The results demonstrate that representation-space counterfactual optimization provides clinically meaningful explanations while offering a new perspective on interpreting volumetric deep learning models.

Detecting or attributing a supply-chain disruption is not the same as selecting the intervention that maximizes recoverable net value. We present CriticalSCM-Bench v1, a controlled synthetic benchmark with causal ground truth, paired factual/counterfactual rollouts, and an explicit net-value objective. Relative to a full-information train-selected static benchmark, LambdaMART improves median normalized net value by 5.7--16.2%, with paired statistical support on the semiconductor and critical-material archetypes but not on digital infrastructure. On digital infrastructure, a domain-informed constant-buffer policy remains stronger, showing that greater model complexity is not uniformly justified. Across partial and delayed settings, LambdaMART retains 33--75% of full-clamp value. Stress tests further show that intervention fidelity, timing, cost, and held-out disruptions can alter policy ordering. Critical materials show the weakest out-of-distribution retention. Separately, a guarded explanation study over 540 generations preserves every fixed intervention decision after deterministic validation and template fallback, although exact wording remains unstable. Within this controlled setting, the results identify regimes in which adaptive ranking adds value and those in which simpler structural policies remain preferable.

Counterfactual video understanding evaluates whether models grasp physical and commonsense regularities. However, existing multiple-choice question (MCQ) benchmarks inadvertently leak target events through their questions and candidate options. This reduces the core challenge from active discovery to text-guided verification. In this paper, we present FADE, an effective training framework for counterfactual discovery and explanation. Our method is built on an evidence-first, two-stage training paradigm. First, evidence-internalized supervised fine-tuning grounds the model's predictions in decisive visual anomalies. Second, we apply a fading-anchor reinforcement learning strategy that progressively removes textual guidance, compelling the model to independently discover and explain evidence. To rigorously evaluate this capability, we also introduce an effective pipeline that converts existing MCQ datasets into aligned MCQ, open-ended question answering (OQA), and captioning tasks without requiring additional data curation. Our simple approach yields strong results. Using Qwen3-VL-8B as the baseline, FADE achieves state-of-the-art strict paired scores across all three tasks on DualityVidQA-test and IPV-Bench, outperforming GPT-5.6. In specific, when transitioning from constrained MCQs to unconstrained OQA and captioning, our model demonstrates remarkable robustness. Its performance retention is 90.4% and 67.4% on DualityVidQA-test-substantially higher than the 48.1% and 30.7% retained by GPT-5.6. We hope this simple framework can serve as a solid baseline for future research in unconstrained counterfactual video understanding.

Proteolysis-targeting chimeras (PROTACs) induce protein degradation by recruiting a target protein to an E3 ubiquitin ligase, making degradation a joint outcome of the degrader molecule and its biological context. Although public databases contain thousands of structured molecule-target-E3 records, degradation measurements are available for only a small fraction of them. Existing supervised approaches therefore leave most recorded chemical-biological relationships unused. We introduce DegradeQuery, a context-aware prediction framework that converts these label-missing records into a pretraining signal. Its counterfactual tuple pretraining objective contrasts recorded tuples with alternatives formed by replacing the target, the E3 ligase, or both, enabling the model to learn contextual associations without assigning activity pseudo-labels. The resulting representation is then fine-tuned to predict degradation from the complete molecule-target-E3 context. On the official PROTAC-8K benchmark, DegradeQuery achieves an area under the receiver operating characteristic curve of 0.9065 and an accuracy of 0.8500, outperforming the compared methods. Controlled analyses further show that the improvement is primarily attributable to tuple-level pretraining, can be recovered using only label-missing records, and remains complementary to protein language model representations. These findings demonstrate that incompletely labeled PROTAC databases contain useful relational supervision and provide a practical route for learning context-aware degradation predictors from scarce experimental labels.

Self-improvement for multimodal large language models (MLLMs) is typically driven by reward-based methods that provide only coarse scalar feedback. Distillation offers a richer alternative through dense token-level supervision, but in the visual domain it usually depends on privileged context constructed using external annotations and tools, or stronger models. We introduce \textbf{CVPD} (Contrastive Counterfactual Visual Process Distillation), which, to the best of our knowledge, is the first fully self-contained framework for dense, on-policy, token-level visual self-distillation for MLLMs. CVPD identifies visual blind spots where zooming into a region changes and sharpens the model's answer distribution, while removing the same region leaves the full-image behavior largely unchanged. Such regions reveal perceptual information that the model can encode but fails to consistently utilize under full-image conditioning. We propose a three-gate Counterfactual Criterion that identifies these regions directly from the model's own responses and converts them into dense contrastive supervision for self-distillation. On Qwen3-VL-8B-Instruct, CVPD outperforms six self-evolving baselines across twelve benchmarks, including methods that rely on external GPT-4o supervision, without a single regression. It achieves gains of $+3.60$ on OCRBench, $+3.38$ on MMStar Fine-Grained Perception, and $+3.08$ on MMStar Logical Reasoning, while maintaining or improving performance on broader multimodal benchmarks.

Adversarial training under long tailed distributions suffers from a dual imbalance: the class imbalance skews the training objective toward head classes, and the adversarial inner maximization may further amplify this bias. Existing methods mitigate this issue by correcting class priors or adapting class wise robust supervision, yet they treat each class in isolation and fail to identify which boundaries drive long tailed collapse. We propose a Confusion Geometry Rebalancing method (CGRm) for long tail adversarial training, a plug in framework that leverages directed robust errors as training signals. CGRm leverages periodic robust evaluations to derive source class loss weights, class wise robust coefficients, and a directed confusion geometry graph. The method then couples feedback weighted robust optimization with graph guided margin correction, thereby boosting the robustness of vulnerable classes and sharpening the critical boundaries that drive long tailed performance degradation. Experiments on long tailed benchmarks show that CGRm achieves consistent robust performance gains over existing methods, with ablations validating the contribution of each component. We provide the code in the supplement.

Interactive video world models generate rollouts autoregressively under an action stream, yet they are trained and evaluated almost exclusively on factual prediction. We study counterfactual generation inside the rollout: given a trajectory the model has itself generated, what would have happened had the actions differed from step t* onward? We formalize noise-coupled twin rollouts --- a factual and a counterfactual branch sharing the generated prefix and the future exogenous noise sequence, diverging only in the action stream at an intervention point. Because the factual branch is self-generated, its exogenous noise is known exactly: the abduction step of Pearl's counterfactual procedure is exact by construction, sidestepping the approximate-inversion problem faced by editing-based pipelines. Noise coupling further turns the minimal-change principle into a per-sample verifiable property: we define a spatiotemporal locality metric that penalizes divergence outside the causal descendants of the intervention, computable against simulator ground truth without a learned judge. Forking the simulator state at t* yields ground-truth counterfactual re-renders, which we use as verifiable rewards for post-training. This note establishes the formal framework, metric definitions, and positioning; experiments are forthcoming.

Reinforcement learning (RL) seeks to optimize sequential decisions to maximize population-level benefits over time. However, when deployed in high-stakes settings such as healthcare, RL decisions might systematically restrict some subpopulation's access to valuable services in a manner contrary to the values and goals of stakeholders. Counterfactual fairness (CF) offers a promising framework to address this problem based on causal reasoning. This paper develops a data preprocessing algorithm that, when used in tandem with policy learning, enables CF in RL. Our algorithm relies on a novel quantile distribution mapping method for sequentially estimating the counterfactual states and rewards in the data preprocessing step, subsuming common additivity assumptions used for counterfactual prediction as a special case. We theoretically prove that the per-step level of counterfactual unfairness and infinite-horizon suboptimality gap can be bounded under mild regularity conditions. We also empirically test our algorithm in numerical experiments as well as in application to a real-world interventional digital health dataset.

Visual counterfactual explanations aim to change classifier decisions through realistic and localized edits while preserving decision-irrelevant content. Existing DDPM-based methods typically perform classifier-guided editing along a long reverse denoising trajectory. The changing noise levels make semantic editability and spatial control difficult to balance, and the editable state is noisy, whereas the target classifier is trained on clean images. As a result, these methods require either costly recursive denoising or low-quality one-step estimates to obtain classifier-facing clean images. We propose FiRe, a Fixed-noise Refinement framework for visual counterfactual explanations. Rather than following a reverse denoising trajectory, FiRe maps the input to a fixed noise level and iteratively refines the noisy state at that level. To provide clean images for classifier guidance, FiRe first adapts Pixel Mean Flow to visual counterfactual explanation, enabling direct clean-image prediction from noisy states. To make fixed-noise refinement produce minimal and localized counterfactual edits, FiRe introduces three FiRe-specific controls: a dynamic dual-mask strategy, adaptive guidance, and early stopping, which determine where edits accumulate, which changes become visible, and when refinement stops. Experiments on five tasks across three datasets show that, compared with the strongest recent baseline, FiRe achieves about 3$\times$ faster online inference and 8$\times$ fewer FLOPs while obtaining comparable or state-of-the-art counterfactual quality.

The emergence of social finance (SocialFi) transforms online communities into complex socio-economic systems. Within these spaces, collective decisions shape a "digital commons" characterized by social capital (e.g., community trust) and financial health (e.g., market liquidity). Governing such hybrid ecosystems is challenging because real-world interventions are costly and irreversible. While counterfactual simulation is essential for exploring alternative governance strategies, existing approaches fail to capture the non-linear interplay between governance rules, individual behaviors, and emergent economic outcomes. To systematically unpack this complexity, we operationalize the Institutional Analysis and Development (IAD) framework as our theoretical foundation, synthesizing prior literature with insights from formative expert interviews. Built on this framework, we present SocialFiVis, an IAD-embedded visual analytics sandbox. It introduces a robust model to quantify the dual-track digital commons, coupled with a two-phase simulation engine. This engine combines LLM-derived personas with a mechanism-guided Perception-Reasoning-Action (PRA) runtime to simulate heterogeneous, context-aware agents empirically grounded in the retained messaging cohort. A hierarchical multi-view interface with interpretable reasoning pathways enables community operators to explore counterfactual policies and trace system-level outcomes back to individual behavioral rationales. We evaluate SocialFiVis through two case studies, a user study, and follow-up interviews. Results demonstrate that SocialFiVis supports fine-grained behavioral attribution and helps explain emergent phenomena such as the structural decoupling of social capital and the resilience of messaging members under localized governance shocks.

Fairness audits for LLM-based recommenders have largely focused on observable outputs, implicitly assuming that stable recommendations reflect stable internal processing. We challenge this assumption with FairGap, the first benchmark to jointly evaluate recommendation fairness at two levels: observable output shift (OBS) and hidden representation shift (IBS), measured through controlled counterfactual identity probes across gender, age, and race. Their relationship is summarized via Representation-Output Alignment (ROA), with quadrant diagnostics for identifying user-level hidden-output mismatch. Applied to six open-weight LLM families across three domains, FairGap reveals pervasive hidden-output decoupling: ROA rarely exceeds 0.22, and a non-negligible user population shows stable outputs despite substantial internal shifts, a mode that output-only audits cannot detect by design. Further, activation steering that reduces IBS by up to 8x simultaneously worsens OBS, demonstrating a fundamental tension between internal and output-level fairness that existing frameworks are unequipped to diagnose.

Large language models (LLMs) are high-value assets that can be derived through redeployment, fine-tuning, quantization, or further alignment. Because deployed LLMs are commonly exposed only through query APIs, ownership verification must often rely on black-box text responses. This setting is difficult: generations are open-ended and can vary across repeated queries, while existing black-box fingerprints rely on signals that are fragile under a final-response interface, including full-text matching, soft behavioral features, or model-specific prompts designed not to transfer. We propose TCF (Targeted Counterfactual Fingerprinting), a black-box LLM fingerprinting framework that converts open-ended generation comparison into constrained-answer targeted counterfactual transfer. TCF restricts each verification query to a finite answer space, reducing the surface-form ambiguity that enters the verification score, and optimizes a prompt perturbation toward a counterfactual target different from the protected model's clean answer on the original prompt. Verification reduces to checking whether the suspect model's parsed final answer matches the recorded target. We introduce the source-model counterfactual margin (SCM), a protected-model-only quantity that certifies the target is unlikely before the perturbation and likely after it; SCM controls target selection, perturbation stopping, and fingerprint filtering. Under explicit derived-preservation and independent-transfer budgets motivated by local behavioral closeness, we derive a target-accuracy gap between derived and independent models. Across four LLM families, TCF achieves an average AUC of 0.9861, improving over TRAP, ProFLingo, and ZeroPrint by 0.07 to 0.19.

Vision-Language Models (VLMs) should answer from concrete image evidence rather than language priors, dataset shortcuts, or irrelevant visual context. Existing perception-aware post-training methods encourage image use through global perturbations or attention proxies, but they do not test whether a sampled answer causally depends on the local evidence that supports it. We propose Counterfactual Evidence Disentanglement (CED), a training-time evidence audit for VLM grounding. For each response, CED neutralizes an object-centric Evidence Region and compares the resulting support drop against matched non-evidence Regions. We combine this signal with answer correctness inside GRPO, rewarding correct answers that rely on the evidence path rather than shortcut or nuisance paths. CED uses weak object-level proposals, requires no question-specific evidence annotations, and adds no inference-time overhead. Across nine public benchmarks and four backbones, CED outperforms prior RL-based post-training methods, with targeted analyses verifying its object-centric signal.

Large language models (LLMs) have increasingly supported response generation grounded in user-provided knowledge spanning heterogeneous structures. However, existing benchmarks provide limited assessment of whether LLMs can faithfully perform multi-hop reasoning chains across such knowledge contexts while remaining robust to variations in their input order. We introduce TKFQA, a factuality consistency benchmark comprising 10,130 question-answering (QA) pairs grounded in tables, texts, and knowledge graphs (KGs). Each example is constructed from an explicit counterfactual reasoning chain, enabling the joint evaluation of answer correctness, reasoning-chain accuracy, and robustness to different input-order. An extensive evaluation of 14 open- and closed-source LLMs reveals that state-of-the-art models exhibit limited reasoning-chain accuracy and remain sensitive to variations in the input order of heterogeneous knowledge contexts. To address these limitations, we propose ORLF, an LLM-agnostic training framework that models cross-context topological relations through knowledge-specific latent vectors. ORLF integrates context-wise position encoding, a latent-bridge attention mask, and topological knowledge bias to preserve knowledge-specific bias and encode topological semantics. Experiments across four LLM backbones show that ORLF outperforms competitive training-free and LoRA-based baselines, improving average Exact Match and Reasoning-Chain Accuracy by 2.15% and 4.29%, respectively, while reducing order-induced performance standard deviation by 0.04% to 3.01%.

A world model is only useful for physical AI if it changes what the agent does, and only safe if it declines to do so when it is wrong. We study both halves of that requirement with CausalNav, a controller built around a signed, action-conditioned transition graph over identified state coordinates. At deployment CausalNav simulates a small library of intervention sequences, converts their objective error into policy-logit advice, and admits that advice only when a scale-free predictive-reliability certificate, a policy-margin gate, and an argmax-agreement gate all pass; otherwise it falls back exactly to its own model-based base controller. We evaluate against nine controlled baselines (transformer, recurrent, split-latent, graph, causal-induction, and three recent model-based reasoning modules) on CartPole-v1 and discretized Pendulum-v1 with physical-parameter shifts, under one shared PPO trainer, one interaction budget, and ten held-out seeds (200 runs). CausalNav attains the best average rank (1.25 of ten). The diagnostic result is more informative than the ranking: the learned graph recovers structure well above chance (CartPole F1 = 0.59 +/- 0.09), yet per-seed structural fidelity is uncorrelated with per-seed control benefit (r = -0.15, p = 0.67), and the certificate abstains on 10/10 Pendulum seeds, where forcing the planner on costs return. Model fidelity did not predict downstream control utility in our setting; certified abstention, not better prediction, is what made the world model safe to deploy.

Measuring political bias in large language models (LLMs) remains challenging as it can manifest through subtle differences in framing, argumentation, and legal reasoning that are difficult to capture with a single metric. In this work, we introduce Poli-Bias, a counterfactual framework for measuring whether LLMs treat legally equivalent conflict scenarios differently depending on the countries involved. Poli-Bias compares responses to paired prompts in which country identities are systematically swapped across diverse geopolitical relationships, legal violations, and reasoning tasks. Rather than reducing bias to a single judgment, our framework decomposes response disparities into five interpretable dimensions, revealing how and where unequal treatment manifests. Across 13 contemporary LLMs spanning diverse model families and sizes, we find that country identities and user affiliations can systematically affect how equivalent actions are described, evaluated, and defended under international law. Our results thus establish Poli-Bias as a fine-grained framework for auditing political even-handedness and sycophancy in LLMs.

Multimodal classification typically assumes all modalities are available, yet real-world inputs are often incomplete. Imputation and dynamic fusion can mitigate such incompleteness, but existing methods operate at a coarse modality level and thus cannot retain reliable components while suppressing misleading ones within the same recovered modality, compromising prediction reliability. To address this issue, we propose GAUGE, a lightweight counterfactual gating framework for incomplete multimodal classification. GAUGE first imputes missing modalities with a frozen imputer and encodes observed and recovered inputs uniformly as fine-grained evidence units. Rather than intervening on each unit explicitly, GAUGE scores the counterfactual effect of replacing every unit with a reference representation through prediction-aware Taylor evidence scores, all obtained in a single forward-backward pass. These scores are mapped to continuous gates, which are converted into additive attention-logit biases for unit-wise evidence modulation without altering the backbone architecture. Experiments across six benchmarks demonstrate that GAUGE outperforms strong baselines across diverse incomplete-input settings. Furthermore, a Taylor remainder theoretical analysis characterizes the error of the first-order approximation relative to the exact counterfactual effect, establishing GAUGE as a principled and scalable framework for fine-grained evidence control under modality incompleteness.

While many algorithms blend reinforcement learning (RL) with counterfactual regret (CFR) methods to leverage tradeoffs in computational speed and performance, there are fewer investigations into generative sampling frameworks in game theoretic applications in incomplete information games. We extend a generative flow network framework, Adversarial Flow Networks (AFlowNets), to incomplete information games, called Information Flow Networks (IFNs). We prove that previously established constraints for generative flow networks in complete information games are inadmissible for obtaining valid densities (corresponding to player strategies) and a valid training objective. We show that our proposed generalization, IFlowNets, alleviates this issue and strictly generalizes AFlowNets. In preliminary results for three standard game environments, IFlowNets perform comparably to or better than Outcome Sampling Monte Carlo Counterfactual Regret (OSMCCFR) and standard RL-based methods in performance and speed.

Current Multimodal Large Language Models (MLLMs) can process diverse sensory inputs, yet their reasoning remains heavily biased toward a dominant modality, resulting in brittle cross-modal reasoning. We introduce C$^3$PO, a benchmark of 3,404 samples spanning video, audio, image, and text, evaluating two abilities: information composition (fusing dispersed evidence) and counterfactual conflict (resolving deliberate contradictions). C$^3$PO's paired IC/CC structure and four-tier design enable targeted diagnosis of when and why cross-modal reasoning fails. Built through a fully automatic pipeline using 25 logically grounded templates, C$^3$PO reveals that while humans achieve 88.64% accuracy, the best model (Gemini-3.1-Pro) reaches only 73.17%, with open-source models collapsing under conflict. Through attention probes, we find 86-95% of failures stem from modality dominance: models commit to one modality while ignoring contradictory evidence, concentrating 87-95% of attention on text. Mid-layer attention entropy predicts correctness-sustained exploration succeeds, premature collapse fails. The 56-point accuracy gap between equally complex templates reveals that performance depends on modalities' structural roles in conflict resolution, not combinations. These findings show multimodal perception does not guarantee robust reasoning; architectures must enable sustained cross-modal attention to avoid premature

Counterfactual analysis aims to predict potential outcomes under hypothetical scenarios, offering valuable insights for decision-making. This paper investigates the application of large language models (LLMs), specifically the GPT-3.5 model, for counterfactual analysis. We focus on the online lending context, where the counterfactual return on investment (ROI) is crucial for evaluating different interest rate schemes. We begin by assessing the predictive performance of GPT and comparing it with advanced machine learning algorithms. The results show that prompt engineering can significantly enhance GPT's predictions, with the R-squared increasing from 1.97% to 2.84%, closely approaching the 3.48% achieved by gradient-boosted regression. Subsequently, we utilize GPT to generate counterfactual ROIs under a set of alternative interest rates. GPT exhibits logical coherence and causal reasoning in its responses. The findings underscore the potential of LLMs as effective tools for counterfactual analysis in online lending, suggesting broader applications for LLMs in various predictive and decision-making contexts.

Oscillatory signals, such as vibration, carry class-discriminative information in specific frequency bands; perturbing them in raw feature space for counterfactual analysis easily destroys their temporal structure and produces physically implausible results. In this work, we introduce IMFACT (IMF-based counterfACTuals), a model-agnostic framework for generating plausible counterfactual explanations for time series classifiers that operates in the decomposition space of Empirical Mode Decomposition. An input signal is split into Intrinsic Mode Functions (IMFs), and selected IMFs are progressively substituted with those of a Nearest Unlike Neighbour (NUN) until the classifier flips to the target class. We evaluate six IMF-selection strategies and a multi-NUN cycling extension on two UCR benchmarks (FaultDetectionA, FruitFlies). The variance-based strategy with three NUNs outperforms two prominent baseline techniques on reliability and plausibility metrics, while cycling across three NUNs yields the best proximity across both datasets.

Algorithmic recourse seeks to help individuals reverse unfavorable automated decisions by recommending actionable changes that achieve a desired outcome. As an individual usually has several distinct routes to a favorable decision, and different people can act on different ones, a recourse system should offer multiple realistic alternatives rather than one. Existing approaches formulate recourse as an optimization problem that constructs one or a small set of counterfactuals rather than modeling the underlying space of feasible solutions, and in practice each sacrifices diversity, plausibility, or feasibility to secure the others. We propose Tractable Recourse Distributions, a probabilistic framework that represents the space of feasible alternatives for a given factual instance as a probability distribution over favorable outcomes. For commonly used cost functions based on proximity and the number of feature changes, we show that this distribution admits an exact representation as a probabilistic circuit, obtained by exponentially tilting the circuit; each individual's distribution is therefore available in closed form, without retraining the model. Sampling from these distributions naturally produces diverse and plausible recourses, while the tilting parameters provide explicit control over their proximity and sparsity. Experiments on standard algorithmic recourse benchmark datasets demonstrate that the proposed framework attains diversity, plausibility, and feasibility simultaneously, while retaining sufficient probability mass over feasible counterfactuals for rejection sampling to be practical. A visual study on MNIST illustrates how the tilt strength trades proximity against validity.

On-policy distillation (OPD) supervises student-visited trajectories, yet divergence-based rules cannot determine whether an erroneous prefix remains correctable. We formulate this decision as counterfactual recoverability and replay each error state through budget-matched teacher-continuation and rollback branches. Based on their relative success, states are categorized as recoverable, irreversible-but-avoidable, or ambiguous, and these labels guide whether training retains, rolls back, or conventionally supervises the corresponding trajectory. On AIME branch diagnostics, the mean continuation-minus-rollback effect is 0.185 for recoverable states and -1.000 for irreversible-but-avoidable states, demonstrating opposite intervention preferences. A branch-derived recoverability proxy achieves an AUC of 1.000, substantially outperforming divergence alone at 0.392. Across frozen evaluations, recoverability-aware control achieves the strongest recorded performance, reaching 0.578 success on held-out AIME2025 compared with 0.517 for the best baseline. It also improves AIME2024-2025 average@32 from 0.2656 to 0.3125 and GPQA-Diamond average@32 from 0.2702 to 0.3070. Component ablations further show that retaining teacher-correctable prefixes provides the largest individual contribution. These findings establish recoverability as an outcome-grounded decision variable for selective supervision in OPD.

Vision-Language-Action (VLA) models have driven significant progress in robotic manipulation, yet they fundamentally struggle with the vision-override phenomenon. Driven by the severe modality imbalance between dense visual streams and sparse linguistic instructions, VLAs frequently fall prey to causal confusion. Instead of treating language as the primary causal driver, the policy entirely bypasses the original instruction by overfitting to spurious visual confounders, such as prominent objects or familiar layouts. To systematically alleviate this bias, we formalize the process of action generation as a Dual-path Deconfounding Graph (DDG) and propose CofactVLA, a novel causal intervention framework. By dynamically constructing a language-masked counterfactual branch within a single forward pass, CofactVLA isolates and neutralizes visual confounders through two synergistic mechanisms. First, Action-Level Orthogonal Projection Guidance (OPG) geometrically projects the factual velocity field away from the counterfactual visual bias during continuous flow matching, extracting the pure semantic intent. Second, Feature-Level Counterfactual Covariance Reduction (CCR) mathematically deconfounds latent representations by penalizing the positive eigenspace of the covariance difference, explicitly suppressing dominant visual shortcuts while preserving the causal language intent. Extensive experiments demonstrate that CofactVLA establishes a new state-of-the-art across diverse simulation benchmarks. Beyond simulation, real-world robot experiments demonstrate the causal efficacy of our method in bridging the generalization gap, yielding a 52.3% absolute success rate gain under out-of-distribution scenarios.

Multimodal large language models (MLLMs) make grounded predictions in real-world scenes by combining visual and textual cues, yet existing benchmarks rarely reveal how they arbitrate between these evidence sources when they conflict. We introduce SIGNPOST-Bench, a controlled counterfactual benchmark for evaluating text-vision conflict resolution. Each source image is transformed into a counterfactual quintuplet of Original, Blank, Similar, Random, and Adversarial variants. Synthetic, localized scene-text interventions are designed to preserve non-textual content, enabling paired measurements of changes in localization performance and directed shifts toward geographic targets introduced by conflicting text. SIGNPOST-Bench contains 5,111 counterfactual groups and 25,555 image variants from four datasets. We evaluate 20 MLLMs from seven providers. Compared with Original images, Adversarial variants raise median localization error from 282 km to 1,347 km, a 4.8-fold increase. Among geocodable adversarial samples, 6.5-20.1% of predictions lie less than 50 km from the injected target across models, and every evaluated model exhibits a positive mean paired reduction in target distance from Blank to Adversarial. Compatible, unrelated, and conflicting text replacements produce distinct effects on model predictions, while clean-input localization performance does not fully predict robustness to conflicting text. These results establish visual geolocation as a continuous diagnostic of scene-text arbitration and provide a controlled framework for evaluating how MLLMs resolve conflicting multimodal evidence.

Large language models (LLMs), and the agents built on top of them, are now benchmarked heavily on whether they can finish a task -- fix a bug, drive a browser, operate a GUI. A complementary social ability, namely how well a model understands and forecasts the way real social events unfold, has barely been measured. We introduce SocietyBench, an end-to-end benchmark that takes a one-line event topic, collects Web news and social-media posts across five platforms, distills them into a date-indexed timeline that keeps factual events and a public-opinion layer separate, and then turns every cutoff date on that timeline into an audited bank of forecasting questions. Questions are scored on two orthogonal 100-point axes: probability calibration and temporal accuracy. Before any model sees a timeline, a three-phase procedure replaces every named entity and shifts every date by a per-event constant, turning a real arc into a counterfactual social world -- structurally identical to what happened, but stripped of the surface labels a model could match against pre-training memory. On five heterogeneous events and 125 prediction points in Chinese and English editions, the strongest of six frontier LLMs reaches only 75.0 out of 100, against a trivial anchor of 50. The two axes come apart: a model can be calibration-strong but time-weak, or the reverse. Three agent frameworks built on a shared base model fail to improve on that base, and two model-free heuristics trail every LLM. Per-event gaps reach 21.4 points on a single axis, which is our main argument for evaluating on several events rather than one. All anonymized timelines, question banks, ground truth, and scoring code are released.

Causal diagnostic models must explain how conclusions follow from evidence because diagnoses guide repairs and treatments. Yet serious cases are scarce, records rarely contain reasoning paths, and data transfer poorly across configurations, complicating local deployment. We present DiagLoop, a counterfactual data flywheel that converts codified physical relations or clinical guidelines, authored once per mechanism family, into training supervision beyond recorded cases. A training-only teacher proposes counterfactual worlds by varying causes, contexts, and observations, while an independent hybrid checker admits only valid worlds. The student reasons through symptom abstraction, causal-chain construction, and root-cause attribution. Stage-specific criteria identify its earliest failure. For nonterminal failures, a bounded repair probes downstream competence, and the resulting weakness profile guides subsequent data generation. Stage-localized reinforcement learning updates only the model-generated continuation, while replay and preservation reduce forgetting. The same criteria govern admission, attribution, reward, and regeneration through checks separate from the proposer. Using only synthesized scenarios and no case-level expert reasoning annotations, the resulting 8B model improves strict path correctness over the strongest conventional baseline. Gains are 11.6 points across eight industrial systems and 5.5 points across ten disease categories. Gains over a deranged-routing control are 3.9 and 2.3 points, respectively. The model also exceeds the evaluated proprietary references in both domains, even when they receive few-shot examples or the specification in context.

Applying a valid medication-safety rule when its patient-specific conditions are not met can produce an incorrect decision. Existing medical evaluations largely use isolated and fixed scenarios. A model may therefore answer correctly by recalling a drug-risk association without showing that it used patient information to decide whether the rule applies. To address this gap, we introduce MedPIC-Bench, a benchmark of source-verifiable recommendations and expert-validated questions for patient-specific medication-safety reasoning. It combines guideline-following questions with paired counterfactual questions in which a controlled change in patient information changes whether a rule applies. The benchmark contains 467 questions annotated along six clinical and reasoning dimensions. Across 28 medical-specific, general, and proprietary LLMs, every model performs worse on counterfactual questions, with mean accuracy falling from 63.6% to 45.1%. Models perform well when an explicit patient attribute directly signals a familiar contraindication, but struggle when patient information must narrow or withdraw a safety warning. Model rationales often acknowledge the changed patient information, yet the final answers retain the previous safety judgment. This vulnerability persists among medical-specific LLMs, whose average CF performance trails that of general LLMs. MedPIC-Bench therefore makes conditional rule application measurable and highlights the limitations of static medication-safety accuracy for assessing patient-specific reliability.

Counterfactual inference approaches for sequential decision-making typically assume deterministic causal models, where all randomness stems from latent variables. However, Markov Decision Processes (MDPs) are inherently stochastic. We address this by formalising counterfactual policy optimisation under probabilistic nondeterministic causal models, which properly separates latent confounding from irreducible stochasticity, and here propose a first practical optimisation problem for identifying robust counterfactual policies under a sensitivity analysis framework. We validate our approach on a sepsis treatment simulator, where diabetes status acts as a hidden global confounder.

Reflection is a powerful mechanism for LLM reasoning, yet its effectiveness hinges on accurately attributing failures to specific reasoning steps, a capability that current models notably lack. Existing failure attribution methods either require expensive step-by-step counterfactual testing that scales poorly with trajectory length, or treat reasoning traces as flat sequences that ignore the inherent non-linear logical dependencies. We propose a hypergraph-based paired failure attribution (HPFA) framework that attributes the failure root cause by comparing the hyperedges of the targeted failure reasoning path against a reference successful path. By reducing the search space, our method efficiently localizes root causes and enables scalable synthesis of attribution data for training a lightweight attributor model via supervised fine-tuning and reinforcement learning. Experiments on mathematical reasoning and agentic coding tasks demonstrate that HPFA can dramatically increase attribution accuracy and efficiency, and the trained attributor consistently improves reasoning accuracy at test time, outperforming baselines that lack graph structure or paired analysis.

Fixed-layout indoor furniture styling requires selecting assets that form a coherent room without changing the prescribed furniture categories, positions, orientations, or scales. Existing approaches typically retrieve each asset independently or rely on static local relations, making them prone to shape, material, and color conflicts after scene composition. We introduce StyleForge, a scene-level structured selection framework built on a dynamic hypergraph style field. A frozen multimodal large language model extracts structured style priors from an open-ended style request and the fixed layout, while StyleForge maintains a learnable candidate distribution for each furniture slot. Conditioned on the target style, the dynamic hypergraph style field adaptively activates and weights layout-induced hyperedges to capture higher-order dependencies among furniture. Counterfactual style preference learning then treats each candidate as a local substitution in the current style field and evaluates its contextual compatibility using Mahalanobis energies. Training alternates between optimizing the style field and the candidate logits. At inference, the model remains frozen and test-time training updates only room-specific candidate logits, progressively correcting cross-slot style conflicts as the global scene context evolves. Experiments on 3D-FRONT demonstrate state-of-the-art furniture retrieval and scene-level style coherence, producing more coherent fixed-layout furniture arrangements than object- and scene-level retrieval baselines.

Sparse attention is widely deployed in long-context serving stacks, yet no framework audits how discarding blocks changes the influence of specific content on model output. We first establish that the phenomenon is real and causal: Block Sparse Flash Attention (BSFA) route replay across four architectures changes output decisions in 13 of 16 cells, with zero identity-replay label flips. We then introduce a dense-calibrated counterfactual audit using matched probe cards---Gold (carrying the correct answer label), Poison (carrying a target wrong label), and Benign (filler only)---under six-layout position symmetry, isolating the sparsification-specific effect. Two patterns compete. Signal concentration: the selector preserves Gold and Poison blocks far above filler-matched Benign blocks (G$\approx$P$\gg$B across all model--task pairs). Integration loss: discarding blocks severs cross-block attention---confirmed by an ablation where isolating the probe block collapses its influence from 4.48 logits to zero. Compression ratio governs the balance: a full sweep from mild ($c=0.25$) to aggressive ($c=0.75$) compression across four model--task pairs reveals that three of four cells move toward stronger sparse amplification at higher compression, with two exhibiting sign reversals. Three independent arms---BSFA route replay, controlled block-top-$k$, and KV-cache eviction---converge: sparsification changes content influence in ways aggregate accuracy cannot detect. We provide an open measurement framework deployable on any model exposing block identities.

Symbolic alpha factor discovery can score a completed expression, but it provides no direct label for the structural decisions that produced it. Generative flow networks (GFlowNets) preserve a diverse, reward-proportional distribution over complete expressions, yet their trajectory-level objective does not compare unchosen sibling actions at an intermediate state. We introduce AlphaG-OPD, a structural on-policy distillation framework that turns terminal factor evaluations into local action guidance. Its design separates three decisions. Component I determines where to teach by exposing grammar-valid siblings at partial abstract-syntax-tree (AST) states visited by the current forward policy. Component II determines what is reliable enough to teach: it evaluates three supported siblings under four shared suffixes and admits a KL-bounded target only when their matched comparisons exhibit sufficient winner agreement and a positive empirical lower confidence bound (LCB). Component III determines how strongly and for how long to teach by consolidating accepted targets through bounded replay, score-indexed expiry, and forward-gradient balancing, without additional factor evaluations. Terminal reward, Trajectory Balance, the backward policy, grammar, and factor-pool rules remain unchanged. An equal-physical-score four-arm ablation tests paired teaching, reliability gating, and consolidation. Across China's CSI300, CSI500, and CSI1000 and the U.S. S&P 500, the complete method delivers strong cross-market performance over multiple random seeds.

Reinforcement-learning-based quantum architecture search (RL-QAS) repeatedly optimizes a variational quantum eigensolver (VQE) after extending a circuit, although circuit construction and action legality are deterministic and known. We introduce DreamQAS, a model-based RL framework that preserves these exact circuit dynamics and learns only the expensive post-VQE feedback. A recurrent randomized-prior ensemble predicts an oracle-free score relative to an empirical energy frontier and supports multi-step imagined policy learning over explicit legal circuits. Ranking-based activation, uncertainty-aware pessimism and truncation, and selective real-VQE verification form a reliability-controlled learning loop. Under a common 15,000-episode budget and frozen evaluation for the RL methods, DreamQAS has the lowest mean frozen-policy energy error on four of five molecular tasks and the second-lowest on one. At fine-error targets reached by all seeds of both methods, it uses 1.6x to 2.0x fewer real VQE calls on four tasks and 10.6x fewer on BeH2-8q. Counterfactual action-ranking utility increases across all five tasks, with a mean increase of 0.346 and a 95 percent confidence interval of [0.185, 0.507], while direct greedy and beam use of the same model does not recover the gains of imagined policy learning. Ensemble disagreement also improves risk-coverage over random rejection on all three probed tasks. These results establish a world-model design for QAS whose value lies in decision-useful feedback rather than exact energy prediction.

Counterfactual explanations (CEs) enhance the interpretability of machine learning models by identifying the smallest change to an input required to obtain a desired output. Although CEs are conventionally formulated as a distance-minimization problem, the theoretical basis of this formulation has received limited attention. We show that a distance-minimization-based CE is mathematically equivalent to the maximum a posteriori (MAP) estimate of a Gibbs posterior within the generalized Bayes framework, specifically when a distance-based prior is used. We call this formulation the Distance-Prior Generalized Bayes CE (DP-GBCE). Building on this posterior perspective, we introduce two decision rules beyond MAP within a unified framework: a Bayes decision that minimizes expected decision loss and CVaR-CE, a risk-averse decision rule. We also propose an extension that uses Bayesian model weights to mix the posterior distributions of multiple models, thereby accounting for model multiplicity, where several models have comparable predictive performance. Finally, we define metrics for evaluating both individual CEs and the posterior distribution as a whole, and use experiments on simulated data and Google Trends data to quantify the trade-offs among the decision rules.

Multimodal on-policy distillation (OPD) transfers fine-grained visual knowledge by supervising student-generated trajectories with a privileged-view teacher. Yet its next-token corrections are source-mixed, combining visual signals with linguistic priors and teacher-specific effects. The key challenge is to estimate which corrections are supported by visual evidence, not merely where or how strongly to distill. We introduce Visual Attribution Distillation (VAD), a counterfactual target-reconstruction algorithm that estimates the visually attributable part of a teacher correction. At each student-generated prefix, VAD evaluates the same fixed teacher with the relevant evidence present and removed. The corresponding change in centered log-probabilities defines ut, a signed proxy for the visual evidence direction that estimates how revealing the evidence supports or refutes candidate tokens. VAD projects the original correction onto this proxy to obtain an intervention-aligned component and a proxy-unexplained residual, then reconstructs a student-anchored target from the former. During training, this reconstructed target supplies the primary supervision signal, while the privileged teacher contributes a weak regularizer. Across six fine-grained visual benchmarks at 4B and 9B scales, VAD outperforms direct privileged-view distillation and visual-advantage weighting. Token- level and controlled-target analyses show that the proxy-aligned component is enriched in task-relevant visual corrections and yields stronger target shifts, especially when evidence refutes a mistaken answer. These results support counterfactual target reconstruction as an effective alternative to source-mixed supervision.

Algorithmic recourse aims to provide individuals with actionable changes to improve their predicted outcomes in high-stakes classification settings, such as loan and mortgage applications. However, most existing approaches focus only on flipping a model's prediction, without accounting for whether the recommended changes lead to genuine improvement in an individual's true qualifications or merely enable strategic gaming of the classifier. Consequently, deployed recourse policies can induce behavioral responses that degrade predictive accuracy and become ineffective after model retraining. In this work, we formalize this failure mode through a causal performative framework for recourse. We model how recourse actions propagate through a structural causal model, capturing interactions among features as well as their effect on the true label. These causal responses induce a non-convex optimization problem, even under standard convex losses. We characterize conditions under which performatively stable solutions exist and can be efficiently computed via simple iterative dynamics. Our analysis reveals that recourse policies that ignore causal structure can induce large, misaligned behavioral responses, whereas causal recourse leads to stable equilibria that reduce incentives for gaming. Experiments on both semi-synthetic and real credit datasets demonstrate that our approach consistently outperforms standard empirical risk minimization while reducing the need for repeated model retraining to accommodate distribution shifts caused by strategic agent behavior.

Counterfactual explanations (CFEs) enhance the interpretability of black-box models by generating alternative instances with adjusted feature values that achieve a contrastive outcome. Reinforcement learning (RL) offers a promising approach for CFE generation, enabling efficient exploration of counterfactual instances while ensuring control over key metrics like validity, sparsity, and proximity. Previous studies have formulated RL states exclusively using features derived from the predictors in the supervised dataset. This study explores the impact of including an instance's predicted class, alongside features derived from the predictors, in the RL state representation for generating CFEs. The hypothesis is that class-awareness enhances exploration efficiency and improves policy optimality. We compare the proposed class-aware RL method with the class-blind RL method, which is similar but excludes the instance's class information from the state representation. The comparison was conducted using seven datasets from diverse domains, varying in size. The results show that during training, class-aware RL offers benefits in terms of convergence speed, reward optimization, and episode length reduction. Moreover, it generates significantly more valid CFEs compared to class-blind RL. Finally, the instance's class-based feature consistently ranks among the most influential predictors in RL's action-selection, as shown by the SHAP and LIME values, underscoring the significance of class-awareness in RL for CFE generation. The impact is heightened clarity, faster learning, improved validity, and more effective counterfactual generation across diverse datasets.

Reinforcement learning with verifiable rewards (RLVR) is central to improving long-CoT reasoning in large language models. Critic-free methods such as GRPO convert response-level rewards into advantages and uniformly broadcast them across tokens, overlooking their unequal contributions to the final outcome. On-policy self-distillation (OPSD) instead provides dense distributional supervision by minimizing the forward KL divergence between an unprivileged policy and a privileged self-teacher, implicitly assuming that the resulting likelihood shifts encode reliable answer-aligned information. We test this premise by fixing each sampled trajectory and re-scoring it under two opposing outcome conditions, one asserting correctness and the other incorrectness. Most affected tokens shift in the same direction under both conditions, with few sign reversals and substantial overlap in the induced optimization signals. Large shifts also concentrate on highly substitutable surface-form tokens, whereas tokens carrying problem-specific reasoning content are less sensitive. These findings show that privileged shifts fail to provide reliable answer-aligned directions, while their magnitudes primarily reflect counterfactual sensitivity rather than token-level learning value. Based on these observations, we propose Counterfactual Sensitivity Credit Reallocation (CSCR), a simple extension of GRPO that reduces credit for highly sensitive tokens and renormalizes token-level advantages to preserve both the original credit budget and verifier-determined direction. On long-CoT mathematical reasoning benchmarks, CSCR consistently outperforms GRPO baseline with the same number of policy updates. Targeted ablations further corroborate our diagnosis: privilege-induced directions are unreliable, moderate downweighting is most effective, and stronger modulation destabilizes optimization.

Multimodal large language models (MLLMs) increasingly support high-stakes decision making by combining complementary information from images and text. While existing explainability methods identify influential image regions or text tokens, they cannot answer a fundamental question: which modality drives a prediction? Consequently, a model may produce the correct output while relying on the wrong source of evidence, masking shortcut learning and unsafe reasoning. We formulate modality attribution as a complementary explainability objective for multimodal foundation models and propose Counterfactual Modality Attribution (CMA), the first framework for quantifying modality-level contributions in MLLMs. CMA generates image-only, text-only, and joint multimodal counterfactuals using coupled diffusion priors and converts them into principled modality attribution scores through a cooperative game-theoretic formulation based on Shapley values. We evaluate CMA on controlled synthetic benchmarks with known ground-truth modality reliance and on a real-world multimodal clinical dataset. CMA correctly identifies the decision-driving modality in 98% of controlled cases and consistently outperforms baselines, revealing failures of cross-modal reasoning that remain invisible to predictive accuracy alone. Our results establish modality attribution as a complementary dimension of explainability beyond feature attribution, providing a principled framework for auditing multimodal foundation models in safety-critical applications.

Markov Decision Processes (MDPs) are widely used as decision-making models, commonly specified over factored state spaces through state variables and their valuations. The exponential blowup in the number of states renders many reasoning tasks in MDPs challenging. Abstractions are promising techniques to reduce MDPs and thus mitigate scalability issues. In this work, we introduce a notion of causality on factored MDPs and a novel property-driven causal abstraction technique that retains many characteristics of the original MDP model. For this, we rely on causal relations over state variable predicates and identify those states that share the same reasons for fulfilling or violating a given abstraction property. We theoretically and empirically compare various causal MDP abstractions using different model types such as MDPs, interval MDPs, or stochastic games. Our evaluation demonstrates the potential of our approach: For several standard benchmarks, we obtain small abstractions that allow us to compute near-optimal policies for the original MDP. Furthermore, our causal abstractions often generalize to related large-scale MDP models.

The rapid development of large language models (LLMs) has renewed interest in agent-based modeling (ABM). However, current LLM-based ABM research faces several key challenges: modeling evolving agent-environment interactions, enabling flexible counterfactual reasoning, and automating simulation workflows for scientific research. In this paper, we propose Eco3S, a socio-economic system simulation framework for economic research and policy analysis that addresses these challenges through three key mechanisms: (1) Co-evolving Environment Design, a bidirectional feedback loop where agents and the environment co-evolve, producing realistic emergent behaviors; (2) Structural Causal Simulation, a structural causal model (SCM)-inspired counterfactual mechanism that allows flexible interventions for diverse causal inference tasks; (3) Simulation-Analysis-Refinement Paradigm, a self-corrective mechanism that iteratively refines experimental designs based on prior simulation results. Experiments on diverse economic scenarios confirm \textit{Eco3S}'s effectiveness in replicating multiple established economic studies (canal decay, origins of governance, and information propagation) and phenomena across domains. Additional results further demonstrate its scalability and generalizability, highlighting the framework's potential for rigorous economic research and policy-making.

Most benchmarks for causal inference over time series are observational, small, or domain-specific, leaving interventional and counterfactual estimation under-served exactly where it matters most, such as in healthcare, policy evaluation, and climate science. We introduce \textbf{DoTime}, an open, scalable, and theoretically grounded generator of multivariate temporal structural causal models (TSCMs) with interventions, released as the \code{dotime} PyPI package together with four frozen evaluation suites. Beyond existing work, it adds capabilities absent from prior generators: continuous-time intervention \emph{windows}, counterfactual sampling modes with a positivity guard, regime-switching SCMs as a strict generalization of interrupted time series, non-stationary dynamics by construction with switching SCM parameters, and deterministic ramp and sinusoidal intervention profiles that place trends and structural breaks \emph{inside} the evaluation window. Moreover, it demonstrates the suitability of the generator as a prior for a causal foundation model reference implementation. The released suites span a training-scale snapshot of $100{,}000$ trajectories and eight named identification structures, each with exact ground truth: paired interventional trajectories from the same SCM throughout, and shared-noise counterfactuals in the continuous-time suite. We ship reference baseline implementations with an evaluation harness, and pose a falsifiable claim: interventional training buys a measurable direction-accuracy advantage over an observational model of identical capacity. It is tested across three training seeds per arm. Under structure-matched evaluation on held-out episodes, the interventional prior-fitted network's (PFN) gap is positive in every structure, trajectory length, and seed tested.

Visuomotor imitation learning has demonstrated success for manipulation tasks. However, the trained policies remain brittle to visual nuisances', with even minor task-preserving variations such as lighting, distractions or changes in colour result in heavy degradation of the trained policy's performance. While increasing data diversity can improve robustness, it is unclear which additional demonstrations are informative for a particular trained policy. We propose Counterfactual Nuisance Behaviour Cloning (CFNBC), an offline data-selection framework for targeted robustness repair. Starting from a nominal policy trained on clean' demonstrations, CFNBC generates paired clean and nuisance observations that preserve the expert action, then measures \emph{action drift}: the change in the policy's predicted action under a nuisance that should not alter the desired behaviour. This provides a policy-specific sensitivity signal for selecting a compact, response-diverse repair set from a larger candidate pool, without requiring rollout success labels or online policy execution. We show in MuJoCo bimanual cube transfer and SimplerEnv cube stacking that action drift correlates with nuisance-induced failure, and that response-guided repair with only $20$--$30$ selected candidates substantially outperforms matched-budget random selection while approaching the performance of much larger random repair budgets. These results support a data-centric view of robustness repair: the most useful data are not necessarily the most numerous, visually diverse, or obviously difficult, but the examples that cover fragile response modes of the current policy.

In model-based reinforcement learning, world models exist as internal simulators, but their training often conflates statistical correlations with causal mechanisms. This problem is exacerbated in multi-agent systems where physical transitions are intertwined with strategic agent intents, causing world models to fail under distribution shift. We introduce Implicit Causal World Models to recover environmental dynamics from offline demonstrations without requiring pre-defined causal graphs. By incorporating policy variance, we render world models discoverable via the sequential backdoor condition. Evaluations across coordination tasks (Two-Door, Navigation, and Giveway) demonstrate that these models provide interpretable causal representations under both full and partial observability, with model accuracy scaling directly with interventional strength.

Agent harnesses have become the operational infrastructure of modern large language model agents, coordinating context, tools, verification, and execution control to translate latent model capability into reliable long-horizon behavior. However, reliable long-horizon behavior requires harness control to adapt to task demands, execution environments, and evolving execution states, whereas current harnesses predominantly rely on hand-crafted or globally fixed policies; this mismatch manifests as unnecessary computational overhead and, in adverse cases, reduced task success. To address this limitation, we formulate the task of enabling adaptive orchestration in harness systems as a causal learning problem and propose Counterfactual Harness Intervention Learning for Long-Horizon Agents (CHILL-Harness). CHILL-Harness intervenes at the orchestration layer to enable advantage-guided workflow adaptation, thereby improving reasoning and execution efficiency while preserving task performance. Specifically, we develop causal intervention effect learning as the effect-estimation component of CHILL-Harness to estimate intervention-relative workflow advantage from confidence-weighted execution evidence and identify advantageous workflow adaptations. We further introduce advantage-realizing causal orchestration as its realization component to adaptively allocate counterfactual reasoning and realize only workflow adjustments supported by sufficient expected advantage. Finally, we incorporate a success-preserving objective and advantage-margin authorization constraints into CHILL-Harness to promote reliable adaptation. Extensive experiments on heterogeneous long-horizon tasks spanning information seeking, software engineering, and terminal interaction show that CHILL-Harness consistently preserves or improves task success while substantially reducing token consumption and execution time.

Rubric-based reinforcement learning enriches language model training by evaluating model outputs against explicit criteria. Yet in GRPO-style pipelines, these structured judgments are reduced to a scalar response-level reward and converted into a response-level advantage, which is broadcast uniformly to all generated tokens. This leaves no explicit mechanism for allocating credit within a response, even when different criteria are grounded in different spans, formatting decisions, or semantic choices. We propose CoRT, a token-level credit weighting method for rubric-conditioned GRPO. Instead of training an auxiliary token scoring model, CoRT uses counterfactual replay to rescore the same sampled response under the original rubric-conditioned prompt and a matched criteria-free prompt. The resulting tokenwise log-likelihood contrasts serve as a proxy for dependence on the rubric context. CoRT maps these contrasts to bounded, response-normalized weights and uses them to redistribute the signed GRPO advantage across tokens, without introducing an auxiliary scorer or changing the response-level reward. Experiments across instruction-tuned models and reward granularities show that CoRT improves over matched response-level GRPO in the vast majority of comparisons, with an average gain of 4.4 percentage points. The method remains competitive with learned token-level credit baselines while avoiding a separate relevance-learning stage. These results suggest that policy-internal counterfactual likelihood contrasts provide an effective training signal for within-response credit allocation while retaining the simplicity and stability of GRPO.

Transaction propensity prediction in B2B e commerce presents unique challenges distinct from B2C contexts, primarily due to the heterogeneous procurement behaviors of organizational entities, which violate SMOTE's implicit assumption of within class feature homogeneity. Specifically, B2B buyers exhibit multi modal procurement cycles that render linear interpolation between minority class samples structurally invalid, producing synthetic data that does not represent real purchasing behavior. This paper introduces a production deployed propensity modeling framework designed to address these complexities through two primary contributions. First, we replace conventional SMOTE based augmentation with a synthetic data generation approach leveraging Diverse Counterfactual Explanations (DiCE). This method produces minority class samples with superior distributional fidelity compared to SMOTE, as validated through quantitative proximity analysis and UMAP cluster visualization. Second, we adapt the PyPARC piecewise affine classification framework to generate calibrated propensity probabilities, facilitating the interpretable segmentation of customers into actionable risk tiers. Evaluated on two years of longitudinal data from a large scale B2B e commerce platform with a 1 to 9 class imbalance ratio, the proposed architecture achieves 93.1% precision at a decision threshold of 0.8, a 9.2 percentage point improvement over SMOTE based baselines at the same threshold (83.9%), and a 26.1 point improvement over SMOTE at threshold 0.7 (66.04%), demonstrating consistent superiority across operating points. These results demonstrate the framework's efficacy in enabling high precision marketing campaigns with significant improvements in customer activation and return on investment.

Mathematical chain of thought (CoT) evaluation is commonly reduced to whether the final answer matches a reference. This conflates producing a correct conclusion with producing a valid derivation an invalid chain can accidentally reach the right answer, while a valid calculation can be followed by a transcription error. We call this mismatch the reasoning answer consistency gap. This framework paper introduces the Reasoning Answer Faithfulness Score (RAFS), a reference free, instance level diagnostic of whether an emitted mathematical trace is locally credible, supports its answer, and is stable under resampling and targeted counterfactual interventions. RAFS combines step validity, reasoning to answer entailment and counterfactual sensitivity, answer consensus, and conditional reasoning stability. It evaluates transcript level agreement, not a models private computation and not factual correctness outside the tested mathematical setting. We retain a preregistered, results blind confirmatory study on GSM8K and MATH, with hypotheses, admissibility rules, calibration, and tests fixed before confirmatory outcomes are inspected. A separate feasibility pilot is specified to verify end to end execution and estimate interven tion coverage before that freeze numerical pilot claims are re ported only when trace level artifacts are available. We formalize four reasoning answer outcomes, justify the non compensatory aggregator, instantiate semantic trace distance, quantify compute and abstention tradeoffs, and define verifier independence and power analyses. RAFS is intended to complement mathematical answer accuracy with an auditable warning signal for silent reasoning failures and answer extraction errors

This paper studies what discriminatively trained reward models (RMs) memorize by measuring counterfactual memorization on two human preference datasets. We show that RMs 1) misallocate memorization to easy, high margin preference pairs, 2) memorize dataset-specific shortcuts (e.g., model identity, user sampling strategy), and 3) overgeneralize simple heuristic correlates of human preference (e.g., length, compliance) when confronted with unseen preference pairs. Overall, our findings indicate that discriminative training of RMs from human preference data results in biased RMs not yet capable of judging response quality in context-dependent scenarios.

Infrared unmanned aerial vehicle (UAV) tracking is challenging because the target is often small, low-contrast, and easily confused with thermal distractors or cluttered backgrounds. Recent Transformer-based trackers have achieved promising performance by learning strong appearance representations, but their responses can still be dominated by background structures when the target appearance is weak or ambiguous. A natural solution is to introduce temporal motion cues. However, in infrared UAV tracking, motion cues are not always reliable: camera jitter, dynamic backgrounds, sensor noise, and target disappearance may produce temporal variations that are stronger than the true target motion. Therefore, the key challenge is not simply how to use motion, but how to distinguish target-consistent motion from background-induced pseudo motion. To this end, we propose CMRTrack, a counterfactual motion reliability learning framework for robust infrared UAV tracking. CMRTrack first extracts temporal evidence from adjacent search regions using a lightweight motion evidence encoder. During training, a counterfactual target-erased history branch is introduced to construct hard motion references, encouraging the motion encoder to learn reliable target-consistent motion rather than arbitrary temporal changes. The learned motion evidence is then incorporated into a one-stream tracking framework through motion-guided token modulation and reliability-aware score fusion, enabling adaptive feature enhancement and response refinement. Extensive experiments on Anti-UAV410 demonstrate that CMRTrack consistently outperforms representative state-of-the-art trackers and significantly improves the OSTrack baseline, with ablation studies and qualitative analysis verifying the effectiveness of the proposed counterfactual motion reliability learning.

Counterfactual explanations are a prominent approach in explainable artificial intelligence (xAI), providing actionable guidance on what input changes would alter a model's prediction to a desired outcome. While early methods primarily focused on minimal feature changes, recent work incorporates additional properties such as sparsity, actionability and plausibility. Despite this progress, fair and systematic evaluation remains challenging. Existing studies often rely on different data splits, predictive models, and evaluation metrics, which limits objective comparison across methods. To fill this gap, we introduce CEL (Counterfactual Explanations Library), a unified library and benchmark for counterfactual explanations designed to support consistent implementation and evaluation. CEL includes 18 datasets of varying size and complexity and provides implementations or reimplementations of 14 widely used counterfactual methods. Using this standardized setup, we conduct a comprehensive quantitative comparison across a variety of methods on datasets that differ in size, number, and types of attributes. The evaluation protocol incorporates multiple complementary metrics capturing validity, coverage, sparsity, proximity, and distributional plausibility, including density- and outlier-based measures to assess the realism of generated counterfactuals. To the best of our knowledge, this is the first comprehensive benchmark that systematically evaluates recent counterfactual explanation methods within a unified and reproducible framework. While prior libraries and benchmarking efforts exist in the literature, many are outdated, limited in scope, or lack consistent evaluation protocols. The proposed benchmark aims to improve reproducibility, enable fair comparison, and establish a workbench for the development of future counterfactual explanation methods.

Currently, most foundation models can reproduce or strongly depend on copyrighted training content, but output similarity alone is insufficient for infringement detection, because similar outputs may also arise from public-domain concepts, common stylistic conventions, or ordinary statistical generalization. In this paper, we develops a unified post-hoc detection framework that treats copyright infringement evidence as a counterfactual conditional distribution shift: a protected target is suspicious when the model's behavior under aligned conditions would change measurably if that target were included in, or removed from, the training process. We formalize this view through conditional differential privacy and introduce Dual-Branch Conditional Sensitivity (DCS), an operational statistic that measures the observable gap between two locally perturbed model states. Specifically, the proposed DCS framework creates a learning branch and an unlearning branch around the deployed model, connects their displacement to the unavailable counterfactual retraining effect through influence-function analysis, and bounds the observable sensitivity by the counterfactual privacy-budget surrogate, local curvature, training-set scale, and perturbation step size. To distinguish target-specific memorization from generic fine-tuning instability, we further define a calibrated detection statistic that subtracts the sensitivity measured under orthogonal conditions. The DCS framework is instantiated for ridge-regularized linear regression, conditional diffusion models, autoregressive language models, and multimodal models. These instantiations show how the same principle can be evaluated through prediction gaps, image-embedding divergence, token-distribution or entropy shifts, and cross-modal representation changes.

Predictive machine learning (ML) models are increasingly used to aid human decision-makers across various high-risk domains such as healthcare and criminal justice. There is a growing recognition of the need to evaluate the causal impact of deploying these systems on downstream outcomes, such as patient survival or crime recidivism. Randomized control trials (RCTs) can provide high-quality evidence on the impact of a deployed model, but they run into a challenge: it is often infeasible to run repeated trials when models are updated or retrained to improve predictive performance. In this work, we present a partial-identification approach to using prior RCT data to construct bounds on the causal effect of a new model. The core innovation in our approach is to leverage assumptions relating fine-grained predictive accuracy to downstream outcomes. We do so via two monotonicity assumptions: first, on individual-level `counterfactual correctness' (all else being equal, a correct prediction leads to non-inferior outcomes); and second, on the relation between subgroup predictive performance and outcomes, interpretable as an assumption regarding trust in model outputs. We demonstrate our method with a simulation study, illustrating how incorporating this information can lead to more informative bounds compared to prior work.

Faithful explanations of time-series classifiers should identify subsequences that are not only sufficient to preserve a black-box model's prediction, but also necessary for maintaining it. However, existing sufficiency-oriented methods can assign high importance to spurious subsequences that support the prediction without being essential to the model's decision. We introduce \textbf{TimePNS}, a necessity-aware framework for time-series explanation. Inspired by Pearl's counterfactual notion of necessity, TimePNS assesses whether a temporal factor is necessary by intervening on it and measuring whether the original prediction is disrupted. The framework adopts a two-stage design. Stage I learns an identifiable causal generative process together with a sufficiency-oriented explanation mask. Stage II performs counterfactual interventions on temporal factors to derive necessity signals, which supervise a temporal gate that refines the initial explanation by suppressing non-essential components and emphasizing counterfactually necessary ones. Experiments on synthetic and real-world time-series benchmarks show that TimePNS more accurately identifies decision-critical subsequences and consistently improves sufficiency-necessity trade-offs over strong baselines.

Automated detection of vision impairing retina-based ocular conditions from fundus images is important for early screening, timely referral and reducing dependency on specialist-only assessment, for which neural network-based deep learning (DL) models have been widely utilized. However, explainability of the DL frameworks remains a major bottleneck for clinical adoption, particularly when model decisions are not linked to retinal regions that are clinically meaningful. To address this issue, this study presents CounterFundus, a novel CycleGAN-driven counterfactual explainability framework, integrating EfficientNet-B5-based retinal disease detection with visually interpretable disease-to-normal fundus image translation. For each pathological image, the counterfactual yielded by the CycleGAN generator represents an estimated healthy counterpart and the resultant difference map is utilized to localize disease-associated retinal changes. Unlike conventional post-hoc saliency methods, CounterFundus provides counterfactual explanations through visually plausible disease-to-normal retinal translation. Thereafter, to quantify the spatial agreement between counterfactual difference maps and classifier saliency, the Counterfactual-Classifier Alignment Score (CCAS) is introduced, embedding Spearman correlation, binary IoU and pointing accuracy into a single assessment protocol. To this end, EigenCAM-aligned evaluation demonstrates that the generated counterfactual explanations remain spatially consistent with classifier-relevant retinal evidence across all CCAS dimensions. Along with that, ablation studies further confirm that CCAS-filtered counterfactual augmentation improves the downstream classification performance in fundus images, establishing CounterFundus as a clinically-grounded, explainable artificially intelligence (XAI) framework for retinal disease detection.

AI-based medication recommendation systems have attracted substantial attention due to their potential to enhance patient safety and therapeutic outcomes. Despite the clinical importance of accurately recommending rarely prescribed medications (rare-meds), we observe that most existing methods show significantly lower predictive performance for rare-meds. We attribute this issue to two intrinsic limitations: (a) the inherent scarcity of data for rare-meds and (b) limited consideration of co-recommended medications. To address these limitations, we propose GenRxR, a novel framework based on large language models (LLMs). GenRxR leverages the medical knowledge and clinical reasoning capability of LLMs to generate counterfactual medical data, mitigating the data scarcity issue for rare-meds. It also integrates an LLM into the medication recommendation process to model relationships among co-recommended medications. To further enhance the clinical reasoning, we introduce an instruction tuning step that aligns the LLM's capability with the recommendation task, enabling better handling of clinical context, including rare-meds cases. In our experiments, we show that GenRxR outperforms 14 (including 5 LLM-based) baselines in most cases. Specifically, it achieves up to 30.9% higher predictive performance for rare-meds than the strongest baseline.