Autoencoding

Thermal infrared imaging offers reliable perception in darkness and adverse weather, but thermal datasets remain scarce, motivating extensive work on translating abundant RGB images into thermal. Such translation is fundamentally ill-posed as thermal appearance is governed by surface emissivity and object temperature, neither of which is observable in the visible spectrum, so a single RGB image is consistent with many valid thermal outputs. We argue that language offers a natural means of resolving this ambiguity, and propose Text2Thermal, a framework for physics-aware thermal image synthesis from textual priors. Rather than inferring the unobservable radiometric factors from RGB, we supply them explicitly through thermally grounded captions encoding material, weather, time-of-day, and heat-emission state, and adapt a pre-trained Stable Diffusion backbone to the thermal domain. Because the radiometric content is determined entirely by the prompt, Text2Thermal synthesizes thermal imagery without requiring a registered RGB image at inference. Where spatial guidance is desired, an optional control signal imparts scene geometry without disturbing the prompt-specified radiometry. On M3FD and FLIR, Text2Thermal achieves state-of-the-art FID among thermal image synthesis methods, and we additionally report results on the FMB dataset, while offering text-level control that translation-based approaches cannot provide.

Angle-encoded quantum kernels on tabular data collapse when the feature map is wider than the intrinsic dimension of the data. We propose the correlation fractal dimension D2 as an a priori qubit budget: encode D2 coordinates chosen by FD-ASE instead of the PCA-95% width or all E attributes. On nine data sets and a statevector simulator (n= 32), a one-layer ZZ fidelity kernel at q=D2 stays geometrically alive while the same kernel at the PCA-95% width has already collapsed. The budget is map-dependent: product-state and IQP maps overshoot it; a second ZZ layer undershoots it. Packed dense-angle and re-uploading encodings still live at the fractal q, but not when PCA-95% features are stacked onto those qubits. Shrinking the angle bandwidth moves the ZZ knee later; stretching it kills the kernel earlier. On IBM Quantum (ibm_fez, 256 shots, n=8) the one-layer ZZ kernel at the fractal width matches the exact kernel (MAE 0.021); past that width both hardware and simulator have collapsed. The ceiling is a property of the map-data pair at a stated bandwidth, not of the classical table alone.

Foundation models are increasingly adapted for downstream medical imaging tasks, yet the influence of the chosen adaptation strategy on subgroup fairness remains poorly understood. We investigate how three parameter-efficient adaptation techniques, including linear heads on the raw CLS token, an MLP, and an attention-pooling module over multi-layer patch features, affect both pathology classification performance and subgroup disparities when applied to the frozen Rad-DINO chest X-ray encoder. Using MIMIC-CXR, we evaluate eight pathologies across race, sex, and imaging-view subgroups on a prevalence-preserving, demographically balanced test set, and additionally probe how strongly each adapter encodes protected attributes. We find that attention pooling achieves the strongest overall discriminative performance and encodes attributes, particularly race, most strongly, but that improved overall performance does not consistently reduce subgroup disparities. Notably, stronger attribute encoding did not correspond to larger disparities: early network layers encoded race most weakly yet produced the largest subgroup performance gaps. Exploring different attention-pooling layer combinations further revealed no consistent relationship between the layers pooled, attribute encoding strength, and subgroup fairness. Our results indicate that richer, more expressive representations can improve accuracy while leaving fairness implications task-dependent and unpredictable, which must be assessed directly and per-task rather than inferred from encoding strength or overall performance alone.

Self-supervised electrocardiogram (ECG) models are often trained on a few seconds of ECG signal and, increasingly, on discretized token sequences. It remains unclear whether these choices sacrifice information needed for rhythm inference and longitudinal consistency in real-world ambulatory recordings. We present a controlled study on the Icentia11k single-lead dataset that varies (i) the input horizon (16 seconds, 1 minute, 5 minutes, and 10 minutes) and (ii) the front-end representation (continuous convolutional patch embeddings vs. fixed vector-quantized tokens), while holding the Transformer backbone and training protocol constant. Representations are assessed by downstream abnormal rhythm detection and by patient-level retrieval that probes cross-session stability. Our results show that increasing temporal context beyond 16-second snapshots yields stronger transfer and higher retrieval accuracy, with the strongest performance achieved by the 5- and 10-minute models, indicating improved capture of slow-varying rhythm dynamics and individual-specific structure. Across all evaluated horizons, continuous patch embeddings outperform discretized tokens, suggesting that quantization can discard clinically relevant waveform detail. These findings motivate ECG foundation models that emphasize extended context and continuous encoders for clinical prediction and similarity-based applications. Our code and pretrained models are publicly available at https://github.com/muha-0/ecg-ssl-representation-learning.

Recent advances in EEG foundation models have demonstrated the potential of large-scale pretraining to enable generalizable neural decoding across subjects, recording environments, and datasets. However, dominant pretraining paradigms face key challenges: masked autoencoding tends to prioritize low-level signal reconstruction over task-relevant semantics, while autoregressive modeling creates a mismatch between continuous neural dynamics and discrete token spaces. To address these challenges, new strategies are needed to effectively align continuous EEG representations with natural-language semantics and enable their integration with large language models. Accordingly, we propose Brain Latent Predictive Model (BLPM), an EEG-language foundation model that reformulates heterogeneous EEG decoding tasks as a continuous semantic embedding prediction problem. BLPM introduces a Continuous EEG Latent Predictive (CELP) encoder that learns transferable representations through latent target prediction. Building on these representations, a Multi-Query Semantic Decomposition (MQSD) module extracts task-relevant information and aligns continuous EEG representations with textual semantics within a shared latent space according to their semantic relationships. Experiments across multiple benchmarks demonstrate consistent generalization performance across diverse tasks, establishing continuous latent semantic prediction as an effective paradigm for EEG-language foundation models.

Recent optimization studies on Retrieval-Augmented Generation (RAG) have exploited chunk-level KV cache reuse to avoid processing long retrieved contexts for higher efficiency, while significant information redundancy and noise still remain in the coarse-grained chunks. This paper optimizes the Pareto frontier under low prefill latency constraints while maximizing accuracy by proposing CoinRAG (Contextualized Information Nugget KV Cache Reuse for Long-Context RAG). The name metaphorically reflects our core mechanism: much like assembling small tokens (or "coins") to accumulate a larger value, CoinRAG compositionally reuses offline-computed, fine-grained nugget caches to form a learned contextual representation efficiently in a more semantically relevant but compact manner. Specifically, instead of full-chunk encoding, CoinRAG identifies query-relevant semantic units within retrieved chunks through two-stage retrieval and seamlessly assembles their sliced KV representations with a chunk-level context. Extensive evaluations on LongBench multi-hop question answering tasks demonstrate that CoinRAG significantly reduces operational costs and outperforms the other baselines with a new Pareto frontier and an average 5.3% relative improvement in answer quality (F1) under a standard fast prefill latency budget.

Language-model agents act on state encodings of their environment, yet these are treated as interchangeable interfaces. Using pretrained language models, we designed a circular-synchronization experiment applying a state-encoding intervention while holding the physical system fixed: each agent sees only a summary of its neighbours' relative phases and chooses to advance, stay or retard. Encoding that state as low-order circular moments rather than as a histogram selected different collective outcomes. In GPT the moment encoding synchronized the population in 6/6 seeds and the histogram encodings in 0/6; the effect replicated in Claude but reversed direction. Replaying identical fields shifted each agent's advance/stay/retard probabilities far beyond within-encoding repeat variation, in GPT, Claude and Gemini; in GPT, presentation alone shifted the operator with the moment values fixed. State encodings therefore form part of a model-dependent effective interaction law, not a neutral interface.

Existing audio-to-score (A2S) systems primarily focus on classical music, and the application to popular music remains underexplored. This paper first presents the new SheetSage-A2S Dataset, which includes 61 hours of audio with \texttt{**kern} score encodings for 9,468 clips originating from 6,066 unique songs, the first of its kind to facilitate A2S research for popular music. Additionally, we improve on existing A2S approaches by using data augmentation and MuQ, a pretrained feature-extraction model for music audio, to enhance generalisation abilities and extract meaningful audio features. Results show that the proposed A2S model achieves 4.98% symbol error rate (SER) on the Quartets collection for classical music, which significantly outperforms the 15.3% SER from the existing state-of-the-art \cite{alfaro-contrerasTransformer2024}. Additionally, our model achieves 20.92% SER on the SheetSage-A2S dataset for popular music, serving as a strong benchmark for future research. The dataset, model, and code are made publicly available at: https://github.com/Multimodal-Music-Research-Lab/SheetSage2Kern_model.

Message-passing graph neural networks are bounded by the 1-WL test and can miss topological structure that distinguishes non-isomorphic graphs. Positional and structural encodings (PSE) inject such topology-derived signals, and learned PSE encoders such as GPSE pretrain a single encoder to produce these signals from random node probes, which can then be frozen and reused as inputs across downstream graph models. We present CondPSE, a learned PSE encoder that applies a learnable polynomial graph filter bank to standard Gaussian node probes and refines the resulting structural-response branches through FiLM-style modulation conditioned on cross-filter, local message-passing, and graph-level signals. CondPSE is pretrained to reconstruct node-level positional/structural targets and graph-level invariants, and is then frozen for use as a downstream input encoding. On synthetic structural-discrimination benchmarks, CondPSE separates graph structures that 1-WL-bounded message passing cannot: it raises CSL accuracy from 42.9% to 97.3% and EXP accuracy from 68.3% to 99.9% relative to GPSE, and ablations show that the polynomial filter bank accounts for most of this gain. On real molecular property prediction, the picture is more limited. With a hybrid local-message-passing/global-attention backbone, CondPSE performs comparably to GPSE without surpassing it, and a ZINC backbone sweep shows no consistent ordering between the two encoders. We report these results and discuss why strong synthetic structural discrimination does not, on its own, yield a downstream advantage for frozen learned PSE encoders, including the role of downstream integration and possible mismatch between structural pretraining targets and molecular property labels.

Sky-image irradiance studies often compare forecasting systems in which the image encoder, temporal model, fusion block, target definition, and training recipe all change together. We use a narrower protocol: the multimodal forecasting pipeline is fixed, and only the visual backbone is varied. The shared setup keeps preprocessing, clear-sky-index normalization, weather-history encoding, fusion, regression head, loss, optimizer schedule, seed, and chronological split policy unchanged. We compare ConvNeXt, Swin Transformer, VMamba, Spatial Mamba, and MambaVision backbones for 10min-ahead forecasting on Folsom and a strict matched NREL split. Forecast skill is measured against clear-sky-index smart persistence, and temporal-only rows are reported as weather-history diagnostics rather than as the main ranking criterion. On the Folsom strict split, all evaluated visual-backbone runs improve over smart persistence. In the evaluated single-seed strict runs, VMamba Small and Swin Base reach matched Folsom RMSE values of 65.39 W/m^2 and 65.50 W/m^2; the temporal-only diagnostic reaches 69.51 W/m^2. On the 313-sample NREL strict split, smart persistence remains strongest at 17.48 W/m^2, while the lowest visual RMSE is obtained by Swin Tiny at 23.76 W/m^2. These results provide a reproducible encoder comparison under one fixed multimodal operating point rather than establishing architecture-level dominance, statistically resolved ranking, or fully optimized forecasting performance. Code available here: https://github.com/Oshadha345/irradiance_benchmark

We document a failure class in frontier large language models -- exception chain collapse -- observed in eligibility evaluation under nested conditional rules of the form "A is required UNLESS B applies, UNLESS C overrides B". The failure reproduces at first observation, but its empirical surface is unstable: between March and April 2026 several failure cells closed silently under the same model alias, with no version bump (GPT-5.4 on construction insurance moved from 96.6% to 100%, same prompt and harness). For regulated workflows, frontier-model accuracy is a moving compliance boundary that shifts without notice. We present the Aethis Eligibility Module, a neuro-symbolic architecture in which LLMs author rules from authoritative sources and an SMT-based layer executes them deterministically, consistent with the authored specification regardless of model drift, reasoning-effort defaults, or prompt format. Three evidence bases: (i) a controlled benchmark of 225 scenarios across four regulatory domains documents the pattern and, in replication, the drift that partially closed it; (ii) a 20-scenario adversarial extension on construction insurance, where the engine scores 20/20, as does one of four frontier configurations (GPT-5.4 at low reasoning effort), while the other three, including Anthropic's strongest model at evaluation time, fail the same coverage-gap edge case; (iii) external validation on nine peer-reviewed LegalBench tasks, 949 held-out cases, where the engine is significantly more accurate than all three frontier models (combined McNemar's p <= 0.003), with margins up to +41 points on the curated multi-prong tasks against the Anthropic models. The contribution is to relocate uncertainty from the inference boundary, where it is silent, to the specification boundary, where it is deliberate and audited. All scenarios, rule encodings, and results are public and reproducible.

Language models encode text as subword tokens, raw bytes, or rendered pixels, but these encodings are usually compared under modeling constraints that expose different amounts of linguistic content to models across different languages. We instead ask what each encoding preserves when both the content and the downstream capacity are controlled. Using verified parallel sentences across thirteen languages and five scripts, we compare tokens, bytes, and pixels through a shared bottleneck whose width is swept to trace rate-utility frontiers. This separates three quantities that are often conflated: the number of input positions an encoding creates, the latent capacity available after encoding, and the task-relevant information that survives compression. We evaluate three utilities: surface form preservation, cross-lingual sentence alignment, and topic classification. No encoding dominates across tasks or capacity regimes. Pixels preserve surface form best, bytes preserve cross-lingual alignment best, especially in same-script multilingual settings, and tokens support topic prediction best. These performances are not explained by sequence length alone. Short inputs can discard useful meaning, while long inputs can preserve information that compresses well. Choosing an encoding is therefore not a fixed preference for tokens, bytes, or pixels, but a rate-utility tradeoff that depends on the task, language mix, capacity regime, and compute budget.

Robust and accurate neural decoders are integral to neurotechnologies such as brain-computer interfaces and closed-loop experiments. Recent work has shown that tokenizing neural data at the spike level facilitates multi-session pretraining and delivers state-of-the-art decoding performance. However, current spike-based models are restricted to supervised learning (SL), limiting training to datasets with paired behavioural labels. To address this limitation, we introduce MOJO (Masked autOencoder-based JOint training), a training framework for spike-tokenizing models that jointly leverages self-supervised learning (SSL) via masked autoencoding and SL objectives. We evaluate MOJO on three spiking datasets spanning monkey motor cortex during reaching tasks and multi-regional mouse recordings during vision and decision making tasks, demonstrating superior performance over purely SL-trained models. This improvement is especially pronounced when training with limited labelled data, particularly in few-shot finetuning, where only a small amount of labelled data from a new session is available. Incorporating SSL also yields more interpretable neuronal representations, improving performance on brain region classification and spike-statistics prediction without explicit optimization for these tasks. We further show that MOJO generalizes beyond spiking data to human electrocorticography during speech, where it continues to outperform purely SL-trained models and achieves performance comparable to neuro-foundation models (NFMs) designed specifically for continuous signals. Overall, augmenting spike-tokenizing models with SSL improves performance in label-impoverished settings and enables the use of unlabelled data across various tasks and species, while generalizing to other neural modalities. These results suggest a path towards more flexible and scalable data usage when training NFMs.

Vision-language models (VLMs) process large numbers of visual tokens, resulting in substantial inference latency and memory overhead. This has motivated extensive research on visual token compression. While training-free strategies rely on heuristic metrics and suffer significant performance degradation under high compression ratios, many training-based methods introduce external compression modules that force the VLM backbone to adapt, incurring substantial retraining cost and compromising VLMs' priors. Effective visual token compression hinges on strong information encoding, a capability already present in pretrained VLMs but underutilized by existing approaches. Motivated by this, we propose VisCo, a training-efficient self-compression framework that reuses the pretrained VLM itself as an intrinsic compressor. VisCo is a parameter-sharing autoencoder that compresses visual information using a small set of memory tokens and transfers hierarchical information from encoding to decoding. Experiments show that VisCo surpasses prior methods across all evaluated compression ratios, with larger gains under more aggressive compression, and remains stable even in the extreme single-token setting. Moreover, when combined with the original visual tokens, the learned memory tokens can even improve the base model, suggesting that VisCo captures complementary representations beyond compression.

The Model Context Protocol (MCP) is the dominant way coding agents discover and invoke external tools. A server advertises each tool through a tools/list handshake that returns a name, a natural-language description, and a JSON input schema. The client renders this metadata once, in a one-time approval dialog, and then injects it verbatim into the model's context on every subsequent turn. Nothing in the protocol requires the rendered approval view and the bytes delivered to the model to match. We isolate that gap as a single structural mechanism, concealment encoding, and show with a model-free, protocol-free analysis that Unicode's TAG block (U+E0000 to U+E007F) has no assigned glyph in any mainstream terminal, chat, or IDE renderer, so a payload written in it is absent from what a human reviewer sees while surviving byte-for-byte into the model's tokenizer. We then measure whether this mechanism actually defeats today's client-side defenses, building a proof-of-concept that speaks the real MCP JSON-RPC/stdio protocol against a genuine client and server. Across 5 distinct MCP metadata surfaces we implement 8 concrete techniques with a deterministic, protocol-level harness. All 8/8 techniques deliver an attacker-controlled payload into the model's context, 4/8 evade a representative string-matching sanitizer, and exactly as the mechanism analysis predicts, only the TAG-block encoding (1/8) is invisible in the human approval view while still reaching the model verbatim. MCP forces re-approval for 0/8 techniques even under a time-of-check to time-of-use rug-pull. To test whether these outcomes are a property of the protocol or an artifact of one server codebase, we re-implement the catalogue against 3 independently developed Python MCP server libraries and find total agreement across all 32 cross-library outcome cells. The baseline sanitizer flags 0 of 25 benign descriptions.

How do we encode numeric values in transformer-based sequence processing, particularly in electronic health record (EHR) data? We systematically compare discrete, continuous, and hybrid value encoding strategies using synthetic arithmetic tasks embedded within real-world EHR data, as well as real-world clinical prediction tasks. Our study reveals trade-offs between numeric precision, optimisation stability, and architectural flexibility. We find that approaches that explicitly model value-concept interactions perform best on precision-sensitive arithmetic tasks when architectural constraints permit. Hybrid token-based approaches that retain numeric values but apply binning prior to projection provide a more robust and broadly applicable alternative, with the optimal number of bins following a simple empirically derived power-law in dataset size. Across tasks, models consistently exhibit reliable "good enough" numeric computation rather than exact arithmetic, while clinical gains from incorporating laboratory values are task-dependent. This suggests that robustness and deployability often outweigh maximal numeric precision in practice, motivating hybrid token-based approaches as a practical default.

Optical recognition of Gregorian notation has recently been attempted with end-to-end methods, with four datasets introduced. However, each of these datasets is in a different encoding. We design a common encoding based on the S-GABC proposal, convert all four datasets to this common encoding, and train a shared end-to-end foundational model for diastematic Gregorian notation that establishes a new state of the art across all four datasets.

As retrieval systems scale, high-quality reranking becomes increasingly important. However, most existing rerankers, whether encoder-based or decoder-based, jointly encode the query and passage, tightly coupling their computation and limiting deployment efficiency as well as flexibility. We present KaLM-Reranker-V1, a fast but not late-interaction (FBNL) reranker that decouples query and passage computation while retaining expressive relevance modeling. Built on an encoder-decoder architecture, KaLM-Reranker-V1 uses the encoder to pre-encode passages with Matryoshka embedding pooling, while the decoder models the system instruction, user instruction, and query intent; cross-attention then captures relevance between the query context and passage representations. This design makes KaLM-Reranker-V1 efficient through decoupled passage encoding, yet not late interaction, by preserving rich relevance modeling through cross-attention. We instantiate KaLM-Reranker-V1 in three sizes, Nano, Small, and Large, with 0.27B, 1B, and 4B activated parameters, respectively. Extensive experiments on BEIR, MIRACL, and LMEB demonstrate that KaLM-Reranker-V1 achieves strong reranking performance with superior efficiency. On BEIR, KaLM-Reranker-V1 achieves state-of-the-art performance, on par with strong industrial models such as the Qwen3-Reranker series; on MIRACL, despite not being extensively trained on multilingual data, KaLM-Reranker-V1 still shows excellent reranking performance. Moreover, on LMEB, reranking models demonstrate a clear advantage, with even the 0.27B Nano model remaining competitive with 7-12B embedding models.

Latent action pretraining learns representations of visual change from pairs of observations, but existing methods typically encode each transition as a single unstructured representation that entangles transition extent and transition mode. We introduce Polar Latent Actions with Radial structure (PoLAR), which imposes a radial-direction structure on latent actions, encouraging radius to encode transition extent and direction to retain transition mode. PoLAR uses temporal offset between two observations as a weak proxy for transition extent, encouraging latent action from observation pairs separated by larger temporal gaps to occupy larger radii. We instantiate this structure in hyperbolic space, whose expanding volume with radius offers a natural fit for more diverse transition modes at larger extents. Across in-task and large-scale pretraining settings, PoLAR improves downstream policy performance in simulation and real-world robot experiments, outperforming latent action baselines and strong pretrained VLAs. These results suggest that the geometry of the latent action space is an important design choice for transferring visual pretraining to downstream robot policy learning.

Neural Text-to-Speech (TTS) systems achieve remarkable quality on short utterances but long-form speech generation shows prosodic drift, speaker inconsistencies and sentence boundary artifacts. Existing approaches either compress sequences, increase context length or naively concatenate independently synthesized chunks. We present an inference-time approach called MagpieTTS-LF that enables MagpieTTS to produce coherent long-form speech without model retraining. Our method introduces three key innovations: (1) soft attention priors to guide monotonic alignment while preserving past and future context; (2) a stateful inference algorithm that maintains context across sentence chunks, ensuring prosodic continuity; (3) history-aware text encoding that uses past text for discourse-level prosodic planning. Experiments on long texts show significant improvements in long-range intelligibility, prosodic coherence, speaker consistency, and boundary naturalness compared to other baselines.

Neural collapse is a structural property of the last-hidden-layer activations in neural network classification models, when trained beyond a zero classification error. In this work, we explore the role of label encoding in neural collapse by relying on the unrestricted feature model with mean squared error training loss. We demonstrate that, for one-hot encoded labels and balanced data, the uncentered mean features associated with each class transition from a simplex equiangular tight frame to an orthogonal frame when increasing the bias regularization coefficient associated with the final classifier. These structures are reminiscent of the orthogonal frame structure of one-hot encoded labels. For any arbitrary encoding, we also show that the final classifier's bias aims at centering the labels, compensating for the discrepancy between the global mean of the labels and the origin. We further discuss the role of the encoding in other neural collapse properties.

Designing novel inorganic materials through generative models remains an important challenge for material science, driven by the complexity and diversity of inorganic structures across expansive chemical compositions and structural landscape. The vast combinatorial space of inorganic compounds demands innovative, AI-driven approaches to overcome limitations in generative accuracy and efficiency. To address this, we introduce a novel method that redefines the encoding and generation of inorganic materials by utilizing domain-specific symmetry-aware representation. Our approach not only refines the representation of intricate inorganic structures but also contributes to the field of material discovery by enhancing the precision and stability of generated candidates. Central to our methodology is a novel padding technique that exploits crystal symmetry information to enhance the encoding process. By integrating Wyckoff position length-aware padding into an encoder architecture, we achieve a more robust informed representation of inorganic materials. This symmetry-driven enhancement improves deep learning models to generate stable, previously unexplored inorganic structures with superior accuracy and computational efficiency. Furthermore, we introduce an end-to-end system that leverages the machine learning potential models to seamlessly generate novel, even those unseen in the training data, and stable inorganic materials from initial data to validated output. This pipeline integrates advanced generative models with stability analysis, marking a significant leap forward in the automated exploration and design of next-generation inorganic materials. Our method improved reconstruction accuracy 5.3% in proton conductor data, and generated 63.5% more novel stable inorganic material to baseline model on the perov-5 dataset.

Diffusion-based imitation learning has shown strong promise for robot manipulation. However, most existing policies condition only on the current observation or a short window of recent observations, limiting their ability to resolve history-dependent ambiguities in long-horizon tasks. To address this, we introduce DSSP, a history-conditioned Diffusion State Space Policy that enables efficient, full-history conditioning for robot manipulation. Leveraging the continuous sequence modeling properties of State Space Models (SSMs), our history encoder effectively compresses the entire observation stream into a compact context representation. To ensure this context preserves critical information regarding future state evolution, the encoder is optimized with a dynamics-aware auxiliary training objective. This high-level context representation is then seamlessly fused with recent state observations to form a hierarchical conditioning mechanism for action generation. Furthermore, to maintain architectural consistency and minimize GPU memory overhead, we also instantiate the diffusion backbone itself using an SSM. Extensive experiments across simulation benchmarks and real-world manipulation tasks show that DSSP achieves state-of-the-art performance with a significantly smaller model size, demonstrating superior efficiency of the hierarchical conditioning in capturing crucial information as the history length increases.

Probabilistic Circuits (PCs) are deep generative models that support exact and efficient probabilistic inference. Yet in autoregressive language modeling, PCs still lag behind Transformer-based large language models (LLMs), suggesting an important expressivity gap. In this work, we compare PCs and LLMs under a unified autoregressive formulation. First, an output bottleneck: PCs parameterize predictions as convex combinations in probability space, which struggles to represent the sharp distributions typical of language; adopting a logit-space parameterization substantially narrows this gap. Second, a context-encoding bottleneck: we prove that structured-decomposable PCs can match Transformer separation rank on vtree-aligned partitions, but show, both theoretically and empirically, that this capacity is limited to partitions aligned with the fixed routing structure, leading to severe degradation when the data exhibits heterogeneous dependency topologies. We further prove that decomposable PCs are strictly more expressive than structured-decomposable ones, though effectively optimizing them remains an open challenge.

Multilingual document understanding remains limited for low-resource languages due to scarce training data and model-based annotation pipelines that perpetuate existing biases. We introduce DocAtlas, a framework that constructs high-fidelity OCR datasets and benchmarks covering 82 languages and 9 evaluation tasks. Our dual pipelines, differential rendering of native DOCX documents and synthetic LaTeX-based generation for right-to-left scripts produce precise structural annotations in a unified DocTag format encoding layout, text, and component types, without learned models for core annotation. Evaluating 16 state-of-the-art models reveals persistent gaps in low-resource scripts. We show that Direct Preference Optimization (DPO) using rendering-derived ground truth as positive signal achieves stable multilingual adaptation, improving both in-domain (+1.9%) and out-of-domain (+1.8%) accuracy without measurable base-language degradation, where supervised fine-tuning degrades out-of-domain performance by up to 21%. Our best variant, DocAtlas-DeepSeek, improves +1.7% over the strongest baseline. Code is available at https://github.com/ahmedheakl/DocAtlas .

Large language models (LLMs) employ safety mechanisms to prevent harmful outputs, yet these defenses primarily rely on semantic pattern matching. We show that encoding harmful prompts as coherent mathematical problems -- using formalisms such as set theory, formal logic, and quantum mechanics -- bypasses these filters at high rates, achieving 46%--56% average attack success across eight target models and two established benchmarks. Crucially, the effectiveness depends not on mathematical notation itself, but on whether a helper LLM deeply reformulates the harmful content into a genuine mathematical problem: rule-based encodings that apply mathematical formatting without such reformulation perform no better than unencoded baselines. We introduce a novel Formal Logic encoding that achieves attack success comparable to Set Theory, demonstrating that this vulnerability generalizes across mathematical formalisms. Additional experiments with repeat post-processing confirm that these attacks are robust to simple prompt augmentation. Notably, newer models (GPT-5, GPT-5-Mini) show substantially greater robustness than older models, though they remain vulnerable. Our findings highlight fundamental gaps in current safety frameworks and motivate defenses that reason about mathematical structure rather than surface-level semantics.

Time series imputation benefits from leveraging cross-feature correlations, yet existing attention-based methods re-discover feature relationships at each layer, lacking persistent anchors to maintain consistent representations. To address this, we propose HELIX, which assigns each feature a learnable feature identity, a persistent embedding that captures intrinsic semantic properties throughout the network. Unlike graph-based methods that rely on predefined topology and assume homogeneous spatial relationships, HELIX learns arbitrary feature dependencies end-to-end from temporal co-variation, naturally handling datasets where features mix spatial locations with semantic variables. Integrated with hybrid temporal-feature attention, HELIX achieves the state-of-the-art performance, surpassing all 16 baselines on 5 public datasets across 21 experimental settings in our evaluation. Furthermore, our mechanistic analysis reveals that HELIX aligns learned feature identities and dependencies with latent physical and semantic structure progressively across layers, demonstrating that it more effectively translates cross-feature structure into imputation accuracy.

Orderless encoding methods have shown to improve Convolutional Neural Networks (CNNs) for image classification in the context of limited availability of data. Additionally, hybrid CNN + Vision Transformers (ViT) models have been recently proposed to address CNN locality bias issues. These models outperformed CNN-only approaches. Despite that, the integration of such hybrid models with more elaborated feature representation can be highly beneficial and remains large unexplored in the literature. In this context, we propose the introduction of an orderless encoding method, Fisher Vectors, to hybrid CNN + ViT architectures, aiming at achieving a model suitable for both small and large datasets. Such enconding method relies on estimating a Gaussian Mixture Model (GMM) on image features. In large datasets, computational costs of the GMM estimation is a limiting factor for the application of Fisher Vectors. Thus, we propose a method to limit the growth of GMM estimation costs as we increase the size of the dataset. We explore the feasibility of our method in the context of medical image classification by appling it to MedMNIST (v2), Clean-CC-CCII and ISIC2018. This collection of datasets contains a wide variety of data scales and modalities. We outperform benchmark results in all MedMNIST (v2) datasets and obtain literature-competitive results in Clean-CC-CCII and ISIC2018.

Modern visual world modeling systems increasingly rely on high-capacity architectures and large-scale data to produce plausible motion, yet they often fail to preserve underlying 3D geometry or physically consistent camera dynamics. A key limitation lies not only in model capacity, but in the latent representations used to encode geometric structure. We propose S$^2$VAE, a geometry-first latent learning framework that focuses on compressing and representing the latent 3D state of a scene, including camera motion, depth, and point-level structure, rather than modeling appearance alone. Building on representations from a Visual Geometry Grounded Transformer (VGGT), we introduce a novel type of variational autoencoder using a product of Power Spherical latent distributions, explicitly enforcing hyperspherical structure in the bottleneck to preserve directional and geometric semantics under strong compression. Across depth estimation, camera pose recovery, and point cloud reconstruction, we show that geometry-aligned hyperspherical latents consistently outperform conventional Gaussian bottlenecks, particularly in high-compression regimes. Our results highlight latent geometry as a first-class design choice for physically grounded visual and world models.

Subliminal learning describes a student language model inheriting a behavioral bias by fine-tuning on seemingly innocuous data generated by a biased teacher model. Prior work has begun to characterize this phenomenon but leaves open questions about the scope of signals it can transfer, the mechanisms that explain it, and the precision with which a bias can be encoded by seemingly unrelated data. We tackle all three problems by introducing subliminal steering, a variant of subliminal learning in which the teacher's bias is implemented not via a system prompt, as in prior work, but through a steering vector trained to maximize the likelihood of a set of target samples. First, we show that subliminal steering transfers complex multi-word biases, whereas prior work focused on single-word preferences, demonstrating a large scope of subliminally transferrable signals. Second, we provide mechanistic evidence that subliminal learning transfers not only the target behavioral bias, but also the steering vector itself, localized to the layers at which the teacher was steered. Finally, we show that the bias is encoded with surprising precision. We train a new steering vector directly on the subliminally-laden dataset and find that it attains high cosine similarity with the original vector.

Can small language models achieve strong tool-use performance without complex adaptation mechanisms? This paper investigates this question through Meta-Tool, a controlled empirical study comparing hypernetwork-based LoRA adaptation against carefully designed few-shot prompting. Using a Llama-3.2-3B-Instruct backbone, we evaluate four adaptation mechanisms--few-shot prompting, documentation encoding, hypernetwork-generated LoRA weights, and value-guided beam search--across four diverse benchmarks: Gorilla APIBench, Spider 2.0, WebArena, and InterCode. Our central finding is a well-supported negative result: despite generating non-trivial weight matrices, the 227.8M-parameter hypernetwork provides no measurable improvement over few-shot prompting alone. Comprehensive ablation studies reveal that few-shot examples contribute +21.5% to performance and documentation contributes +5.0%, while the hypernetwork adds 0%. A 3B model with well-designed prompts achieves 79.7% of GPT-5's average performance at $10 \times$ lower latency. Error analysis across 722 failure cases spanning all shot counts (0--5) shows that at the 5-shot configuration (106 failures), failure modes are task-dependent: schema-heavy tasks (Spider 2.0, WebArena) show near-zero format errors with remaining failures semantic, while format errors dominate on Gorilla (100%) and InterCode (70%). These findings redirect practitioners toward prompt engineering and example curation rather than complex adaptation architectures.

Block-encoding is a foundational technique in modern quantum algorithms, enabling the implementation of non-unitary operations by embedding them into larger unitary matrices. While theoretically powerful and essential for advanced protocols like Quantum Singular Value Transformation (QSVT) and Quantum Signal Processing (QSP), the generation of compilable implementations of block-encodings poses a formidable challenge. This work presents the BlockEncoding interface within the Eclipse Qrisp framework, establishing block-encodings as a high-level programming abstraction accessible to a broad scientific audience. Serving as both a technical framework introduction and a hands-on tutorial, this paper explicitly details key underlying concepts abstracted away by the interface, such as block-encoding construction and qubitization, and their practical integration into methods like the Childs-Kothari-Somma (CKS) algorithm. We outline the interface's software architecture, encompassing constructors, core utilities, arithmetic composition, and algorithmic applications such as matrix inversion, polynomial filtering, and Hamiltonian simulation. Through code examples, we demonstrate how this interface simplifies both the practical realization of advanced quantum algorithms and their associated resource estimation.

Although existing model editing methods perform well in recalling exact edit facts, they often struggle in complex scenarios that require deeper semantic understanding rather than mere knowledge regurgitation. Leveraging the strong contextual reasoning abilities of large language models (LLMs), in-context learning (ICL) becomes a promising editing method by comprehending edit information through context encoding. However, this method is constrained by the limited context window of LLMs, leading to degraded performance and efficiency as the number of edits increases. To overcome this limitation, we propose InComeS, a flexible framework that enhances LLMs' ability to process editing contexts through explicit compression and selection mechanisms. Specifically, InComeS compresses each editing context into the key-value (KV) cache of a special gist token, enabling efficient handling of multiple edits without being restricted by the model's context window. Furthermore, specialized cross-attention modules are added to dynamically select the most relevant information from the gist pools, enabling adaptive and effective utilization of edit information. We conduct experiments on diverse model editing benchmarks with various editing formats, and the results demonstrate the effectiveness and efficiency of our method.