Boreal Forests

Spatially continuous quantification of forest above-ground biomass (AGB) is what makes carbon accounting credible and mitigation strategies actionable. While field inventories provide high localized accuracy, they are spatially sparse; conversely, spaceborne LiDAR from the Global Ecosystem Dynamics Investigation (GEDI) offers broad biomass samples but lacks spatial continuity and systematic underestimation of high-biomass forests. This paper presents an operational framework centered on a single globally trained convolutional neural network (CNN) that is seamlessly adapted to each new landscape through a lightweight empirical field-calibration workflow. The global model combines optical (Sentinel-2), C-band SAR (Sentinel-1), L-band SAR (ALOS-2 PALSAR-2), and terrain (DEM) data. It is trained once against GEDI Level-4A biomass reference data spanning multiple regions and both wet and dry seasons so that it learns the persistent woody-structure rather than a single-date appearance. To avoid retraining for every landscape, the framework applies a small number of local field plots to fit a scale-and-bias correction that aligns the global prediction with ground truth in each region. The pipeline harmonizes sensor data onto a shared 10 m grid, derives vegetation indices and polarimetric ratios, computes per-band normalization stats, and trains the CNN with a hybrid log-domain SmoothL1 with RMSE loss for skewed biomass distribution. On held-out validation the global GEDI-based model achieved R^2 approximately 0.78 and RMSE approximately 22 Mg/ha. A subsequent field calibration combining Random Forest fine-tuning under a 10-fold cross-validation eliminates localized regional biases. This improves local validation performance to R^2 approximately 0.82 and reduces RMSE to approximately 15 Mg/ha, outperforming both the uncalibrated global model and the ESA CCI Biomass product against field plots.

Distributional random forests replace mean-based CART splitting with criteria that compare the full conditional response distribution in candidate children. We implement and systematically study a family of such criteria inside a single honest-forest implementation: isotropic random-Fourier-feature maximum mean discrepancy (MMD), an anisotropic diagonal-bandwidth variant, an adaptive per-split frequency-selection variant, and a non-kernel sliced-Wasserstein criterion, together with post-hoc kernel-mean shrinkage of the forest weights. Using paired-seed comparisons across synthetic quantile mechanisms, real univariate benchmarks, a California-housing subsample curve, and multivariate synthetic and real responses, we characterize where each extension pays. Three findings recur. First, among distributional criteria ordinary isotropic MMD is already close to best in class: the anisotropic, adaptive-frequency, and sliced-Wasserstein extensions, and post-hoc shrinkage, do not systematically improve on it. Second, on scalar tabular regression mean-based CART splitting remains the robust default and wins many cells. Third, multivariate responses are the regime where distributional splitting clearly earns its keep, most sharply on a pure-dependence copula where the energy score separates the criteria even though marginal CRPS does not. The evidence supports a simple allocation story: distributional splitting helps only when non-location structure is both present and estimable; otherwise it dilutes split-selection power away from the mean. All criteria, the honest forest, and the paired-comparison harness are implemented in the open-source \texttt{drforest} library, whose Rust-backed split search makes broad criterion sweeps inexpensive.

Accurate tree-level forest monitoring using laser scanning data requires reliable tree delineation, consistent tree correspondence across multitemporal point clouds, and accurate estimation of tree attributes and their change. Reconstructing tree growth in boreal forests is challenging due to the scarcity of historical stem-level data, propagation of errors from older sensors into change estimation, and growth rates with a magnitude of measurement uncertainty. This study investigates a framework for estimating individual tree diameter at breast height (DBH) and stem volume growth using 136 point clouds acquired between 2014--2025 with 11 scanners on airborne (ALS), mobile (MLS), and terrestrial laser scanning (TLS) platforms across boreal forest test sites. Trees were delineated from an MLS point cloud using deep learning-based segmentation which was transferred to the remaining point clouds, resulting in reliable multitemporal tree correspondence. Stem curves were derived from MLS/TLS data, with ALS data used for height estimation, enabling DBH and volume estimation and time series. A height growth-based scaling model was used to reconstruct stem attributes across time and estimate growth. Results showed that modeled growth achieved higher agreement with manual growth estimates than differencing independently estimated attributes from point clouds. The modeled-manual 5- and 10-year growth RMSEs were 55--111% and 26--67% for DBH, and 31--87% and 21--67% for volume, respectively, depending on plot difficulty. The scaling model was temporally robust, with errors remaining stable or stabilizing after 5--6 years, reaching maximum RMSEs of 8--12% for DBH and 12--23% for volume after 12 years. Combining MLS/TLS-derived stem measurements with multitemporal ALS-derived heights provided a robust framework for individual tree growth estimation without requiring multiple under-canopy scans.

Accurate forest inventory and large-scale mapping are essential for ecosystem monitoring and sustainable forest management. Multiple low-cost edge platforms enable efficient large-area data acquisition, but merging independently constructed local maps in GNSS-denied understory environments still requires initialization-free loop closure detection and global registration. This task is challenging because low-cost LiDAR point clouds are sparse and noisy, while repetitive trunk layouts and the lack of distinctive geometric landmarks lead to severe perceptual aliasing and false correspondences. To address these issues, we propose DTIF (Delaunay Triangulation in Forests), a lightweight trunk-topology-based framework for forest loop closure detection and global registration. Tree trunks are first extracted as stable landmarks and encoded using a Delaunay topology for compact scene representation. Candidate submaps are then screened using edge-length and radius statistics, followed by edge--radius consistency verification and strong/weak vertex support aggregation to construct weighted vertex correspondences. Finally, topology-derived reliability weights are incorporated into a decoupled robust pose estimator that separately estimates yaw, horizontal translation, and elevation translation under gravity alignment. Experiments on simulated and real-world forest datasets demonstrate that DTIF achieves accurate registration with low computational overhead, providing a favorable balance among robustness, efficiency, and deployability on resource-constrained edge platforms.

Microphone array-based passive acoustic monitoring is increasingly used for biodiversity sensing in forests. However, design and evaluation of array systems and configurations remains difficult since field recordings are costly, difficult to reproduce, and provide limited control over forest and atmospheric conditions. We present ForestIR, a physics-informed and reproducible simulation framework that links forest and environmental conditions to microphone-array recordings for bioacoustic remote sensing. Through a more realistic sound propagation method and a systematic control over array design and environmental factors, ForestIR provides a practical simulation framework for optimizing array-based monitoring systems, especially for sound source localization purposes. ForestIR generates source-microphone impulse responses (IRs) under user-controlled forest and atmospheric conditions, and renders synthetic array recordings by convolving test signals with controlled background noise. We evaluate and demonstrate realistic features of ForestIR through experiments based on localization sensitivity to forest layout and atmospheric conditions, and also comparison between simulated IRs with sine-sweep IR measurements from a field experiment. ForestIR provides a practical way to test how forest and ground conditions, atmospheric state, and array geometry affect bioacoustic localization, and can support microphone-array design, robustness testing, and synthetic-data generation for passive acoustic monitoring.

Counting individual trees is a fundamental task for environmental monitoring, yet remains largely unexplored with satellite imagery. At these resolutions, isolated trees may still be identifiable, but crown boundaries become ambiguous in dense forests, making the notion of an individual tree inherently ill-defined. Moreover, large-scale manual annotations of individual trees are prohibitively expensive. While scalable supervision can be derived from airborne LiDAR, the resulting annotations are noisy and difficult to exploit effectively. We address these challenges by formulating tree counting as a spatial density matching problem supervised through Unbalanced Optimal Transport. This formulation naturally accommodates both precise localization of isolate trees and robust density estimation in dense forests. We further introduce a self-correction mechanism that leverages transport residuals to progressively refine noisy supervision during training. We evaluate our approach on TinyTrees, a new benchmark spanning three continents and three satellite sensors, comprising over 216 million tree annotations (including 639k manually verified instances) across $25\,890$ km$^2$. Our method consistently outperforms detection-based, regression-based, and transport-based distribution-matching baselines, demonstrating the effectiveness of unbalanced transport and reliability-aware supervision for large-scale tree counting from satellite imagery. Code, data and models are available at https://github.com/dgominski/treematch.

Forest imagery analysis often involves multiple tightly coupled vision tasks, which must be performed under substantial variation in geographic regions, sensors, and acquisition conditions. However, practitioners often lack a unified tool that is geospatial-native, cloud-optimized, and ML-integrated for end-to-end workflows spanning annotation, prediction, visualization, and downstream analysis at scale. We present AwakeForest, an interactive end-to-end platform designed for large-scale forest imagery that integrates model-assisted inference, automatic annotation, and human-in-the-loop refinement within a single workflow. Our platform supports plug-and-play integration of pretrained models and enables scalable interaction with forest imagery ranging from standard aerial scenes to large orthomosaics that can span several gigabytes to hundreds of gigabytes. AwakeForest produces analysis-ready outputs that can be directly used for downstream analysis and to support iterative model and annotation updates on new scenes. We demonstrate the system on the PALMS dataset and illustrate how AwakeForest supports an end-to-end workflow for practical forest management and analysis.

Camera-trap monitoring in African tropical forests increasingly extends beyond closed-canopy interiors to riverbanks, clearings, and park edges. Among available open tools for African forest camera-trap classification, DeepForestVision is the only one providing a matched offline workflow for both photographs and videos, and previous work showed that it outperformed other available baselines on a comparable benchmark. However, it was designed for closed-canopy, ground-level forest interiors and uses a 35-class prediction space that becomes too coarse when deployments encounter arboreal primates, birds, semi-aquatic taxa, or human-associated confounders such as livestock. We present DeepForestVisionV2, an ecology-driven expansion from 35 to 64 prediction classes (61 animal classes plus human, vehicle, and blank) designed to address three recurrent deployment gradients: vertical stratification, scene openness, and anthropogenic interfaces. DeepForestVisionV2 retains the same offline workflow and is trained on 1,535,010 photographs and 243,354 videos from multi-country African tropical-forest projects. Evaluation combines a cross-country cropped-photo validation set, used to assess robustness across sites and camera-trap settings, with three held-out Uganda video benchmarks spanning the targeted gradients. On the validation set, DeepForestVisionV2 reaches 0.86 accuracy, 0.82 macro-F1, and 0.81 balanced accuracy. On the deployment benchmarks, it preserves or improves baseline accuracy despite its harder classification task, while increasing the number of identified taxa from 22 to 29 in forest-interior videos and from 4 to 9 at riverbanks. In the park-edge use case, it raises accuracy from 0.62 to 0.86 and reduces false alarms from 11 to 0. These results show that DeepForestVisionV2 materially improves field utility while preserving robustness across sites, habitats, and camera-trap settings.

Legged robots are increasingly deployed in forests for ecological surveying and monitoring, yet their autonomy is often interrupted consequent to the challenges posed in traversing forest environments. Forest entrapments, for example, when a robot's legs are ensnared in vines or other vegetation, result in loss of stability and toppling. Such events not only disrupt the mission and require manual intervention, but also risk damage to the robot hardware. To address the absence of a dedicated dataset to investigate these failure modes in forest environments, we present ForEnt, a multi-modal dataset collected with the low-cost Unitree Go2 quadruped across eight forest sites in the Southampton Common Woodlands, UK. For our dataset, over approximately 1.7 km of traversals in 11 sequences were conducted, yielding 69 recorded entrapment events. ForEnt includes time-synchronized RGB-D images, LiDAR scans, proprioceptive data, and third-person video, enabling analysis of terrain factors contributing to entrapment and providing labeled sensor streams for reproducible benchmarking. By supporting the evaluation of entrapment detection strategies, ForEnt lowers the barrier to developing robust quadruped robot deployments in challenging forest environments.

Accurate, spatially explicit characterization of tropical forest structure is essential for carbon accounting and ecosystem monitoring, yet most ML pipelines predict canopy-top height proxies (e.g., RH95/RH98) or AGBD as separate scalar targets, rather than learning the forest vertical structure as an ordered profile. The community lacks a ML-ready multimodal benchmark for predicting the entire GEDI RH profile jointly with AGBD, or for evaluating methods that enforce physically consistent ordering across RH percentiles. We address this with Biomazon, a 20 m multimodal benchmark dataset over the Amazon Basin that pairs GEDI RH and AGBD targets with multi-sensor predictors (Sentinel-1/2, ALOS-2 PALSAR-2, Copernicus DEM, Dynamic World LULC, and AlphaEarth embeddings) under standardized spatial splits and evaluation protocols. Using a shared encoder-decoder with task-specific heads as a baseline framework, we conduct a comprehensive ablation study of (i) backbone/model scale, (ii) modality contributions, and (iii) the use of auxiliary embeddings under standalone and fusion settings, and we report both single-target and joint-target results to quantify tradeoffs under a unified training protocol. Finally, we contextualize baseline performance through regionally aligned comparisons against existing gridded products, including GEDI L4D RH10-RH98 and AGBD, at matching temporal scale. Biomazon, together with the accompanying protocols and baseline results, establishes a reference benchmark for future work on structurally consistent RH-profile prediction and structure-biomass modeling in tropical forests.

Hyperparameter optimization (HPO) for Random Forest faces a specific difficulty in tuning the number of trees: the predictive score typically improves monotonically with ensemble size, so standard methods such as Tree-structured Parzen Estimator (TPE) and Hyperband require a predefined search range and often drive the estimate toward its right boundary. Early-stopping strategies avoid fixing such a range, but can be sensitive to score noise and prone to premature stopping. To address this, we propose an integrated triplet-based plateau-search algorithm that removes the number of trees from the direct TPE search space and still exploits information accumulated across HPO trials. The method adaptively tracks a near-minimal sufficient ensemble size by monitoring relative changes in the out-of-bag (OOB) score across a triplet of forest sizes and shifting this triplet accordingly. This yields an automated and user-interpretable procedure based on a tolerance parameter. We also provide a theoretical analysis: we relate the proposed relative OOB-score criterion to the gap between the current and limiting scores, and derive an asymptotic variance estimate for the corresponding OOB-based absolute relative difference. Experiments show that the selected number of trees can differ substantially from the common heuristic: for most classical benchmark datasets it is smaller, whereas for some high-dimensional bioinformatics datasets, such as Arcene and Dorothea, it is larger. The source code and reproducible experiments are available at https://github.com/lange-am/rf_plateau_hpo.

Existing research largely reduces cultural intelligence in LLMs to a knowledge-level problem, overlooking whether models can effectively utilize their acquired knowledge in realistic scenarios. To bridge this gap, we introduce CultureForest, a benchmark for \textit{Cultural Norm Grounded Reasoning}. Each question is grounded in a small set of atomic norms, enabling verifiable and attributable evaluation. CultureForest comprises 5,378 examples across 8 domains and 53 countries/regions, and supports a progressive evaluation from multiple-choice to open-ended generation. Extensive experiments reveal that even top-tier models degrade substantially in open-ended settings, accompanied by pronounced cross-region disparities. Through targeted analysis, we uncover several consistent patterns: (1) test-time reasoning yields limited gains and may exacerbate inequity; (2) models exhibit highly shared regional preference structures; (3) model responses are markedly conservative, especially under stricter cultural constraints; and (4) by disentangling cultural knowledge acquisition from cultural reasoning, we show that while LLMs possess substantial cultural knowledge, their performance is further bottlenecked by its effective use. These findings point to a necessary shift from knowledge-centric evaluation toward measuring knowledge-grounded reasoning.

Tropical forests worldwide are under intense deforestation pressure driven by economic and political interests, and scientific evidence suggests this deforestation contributes to climate change. This paper proposes a novel logging method for tropical forests, Ultra-Reduced-Impact-Encased-Logging (URIEL). This new method is based on heli-logging techniques combined with intensive use of robotics and AI integrated with post-harvest silvicultural treatments performed by drones. The concept of appropriate equipment for this method was developed, dimensions were determined, details were completed in a digital proof of concept, and an effective digital simulation and economic feasibility analysis were carried out for various helicopter-timber-distance combinations. The results demonstrated that a URIEL method has high economic viability and makes it possible to virtually eliminate collateral damage to forests while maintaining ecosystem services. The main conclusion of this paper is that, despite the satisfactory scientific and technological results, the feasibility of a Uriel method depends on the integration of stakeholders intrinsic to the context: high-tech industry; political governments; certified logging companies; and native populations.

Forests worldwide are increasingly threatened by climate change and disturbances such as fire, pests, and pathogens, creating an urgent need for scalable monitoring of tree cover and tree mortality. Aerial imagery from drones and aircraft is a key data source for detailed and large-scale mapping of tree crowns and mortality. However, related progress is limited by the lack of globally representative, harmonized datasets for joint segmentation of tree cover and mortality. We introduce two novel, open, machine-learning-ready datasets to enable joint segmentation of tree cover and tree mortality from centimeter-scale aerial imagery for the first time at global scales. With DTE-aerial-train, we provide a training dataset comprising 385K image patches of size 1024x1024 pixels, with resolutions ranging from 2.5 to 20 cm. It includes multi-class expert-annotated and -audited pseudo-labels for tree cover and mortality. With DTE-aerial-bench, we provide a geographically balanced benchmark test set of 25 globally distributed orthoimages totaling 525 patches with high-quality expert annotations for both tree cover and mortality. Both the training and benchmark datasets span tropical, temperate, boreal, and dryland biomes and cover a wide range of forest structures and mortality patterns. Using the benchmark test set for evaluation, we establish strong reference baselines that improve mortality segmentation across all biomes and scales with significant gains in challenging regions, such as boreal forests, where the F1 score increases from 0.40 to 0.58 with around 45% relative improvement. All data, models, and code will be publicly released under permissive open-source licenses. An interactive visualization of the benchmark dataset is available at deadtrees.earth/releases/dte-aerial-bench.

This paper addresses the problem of using a deep Reinforcement Learning (RL)-based low-level Quadrotor controller within an autonomous Quadrotor navigation stack for aerial inspection missions in under-canopy forest environments. Specifically, the article presents an end-to-end (mapping states to RPMs) Quadrotor control policy that achieves inspection view-pose tracking (simultaneous position and yaw reference tracking), which is crucial for various target inspection behaviors and point-to-point navigation in forests. To ensure safe and reliable deployment of the end-to-end RL controller in long-range missions, this article utilizes a higher navigation guidance layer comprising of a Traveling Salesman Problem planner (TSP) and a Rapidly-exploring Random Tree Star (RRT*) planner. Over a known map of a forest and a set of user-specified inspection regions, the TSP planner finds the optimal visitation sequence. Between two target regions, collision-free paths that respect the tracking limitations of the lower end-to-end RL policy are generated by an RRT* planner. Through five target inspection scenarios, this article demonstrates that an RL-based motor-level stabilizing controller, supported by a navigation guidance layer, can be used effectively as the low-level inspection execution module for under-canopy forest inspection missions.

We present a highly detailed instance segmentation model for delineating individual tree crowns in natural broadleaf forests using aerial imagery acquired by unmanned aerial vehicles (UAVs). Tree crown delineation in broadleaf forests is more challenging than in other forest types due to diversity of crown shapes and the lack of clearly defined treetops. To address this issue, we developed a deep-learning-based crown segmentation model trained on high-quality annotated crown outlines. We manually delineated 18,507 crown polygons from orthomosaic images collected across seven forests in Japan by skilled annotators, and developed a model based on Mask2Former with multiple backbone architectures. The best model achieved high segmentation performance in structurally complex broadleaf forests using only RGB imagery. This performance was maintained when applied to geographically distinct forests within Japan, as well as to biologically distinct tropical rainforests in Borneo. These results demonstrate that using a large number of high-quality annotated datasets is critical for achieving detailed and generalizable crown segmentation across diverse forest ecosystems. The developed model has been integrated into DF Scanner Pro, a software that supports practical forest monitoring using UAVs, and this implementation is expected to enable a wide range of users to analyze tree-level information in broadleaf forest from UAVs.

Illegal gold mining in the Amazon rainforest causes deforestation, water contamination, and long-term ecosystem disruption, yet remains difficult to monitor at fine spatial scales. Satellite imagery supports large-scale observation, but often misses small mining-related structures and subtle land-cover transitions, especially under frequent cloud cover. We introduce ELDOR, a large-scale UAV benchmark for monitoring environmental and landscape disturbance from illegal gold mining in the rainforest. ELDOR contains manually annotated orthomosaic imagery covering over 2,500 hectares, with pixel-level semantic labels for both mining-related activities and surrounding ecological structures. With this unified annotation source, we establish four benchmark tasks: semantic segmentation, segmentation-derived recognition, direct multi-label classification, and class-presence recognition with vision-language models. Across these tasks, we compare generic and remote-sensing-specific segmentation models, vision foundation model-related segmentation methods, direct multi-label classification methods, and vision-language models under a controlled closed-set protocol. Results show that current methods still struggle with rare small-scale mining structures and fine-grained recovery classes, suggesting the need for context-aware and multimodal modeling. To support domain analysis and practical use, we further build an interactive explorer for domain experts that provides a unified interface for data exploration and model inference.

Autonomous underwater vehicles (AUVs) are increasingly used to survey coral reefs, yet efficiently locating specific coral species of interest remains difficult: target species are often sparsely distributed across the reef, and an AUV with limited battery life cannot afford to search everywhere. When detections of the target itself are too sparse to provide directional guidance, the robot benefits from an additional signal to decide where to look next. We propose using the visual environmental context -- the habitat features that tend to co-occur with a target species -- as that signal. Because context features are spatially denser and often vary more smoothly than target detections, we hypothesize that a reward function targeted at broader environmental context will enable adaptive planners to make better decisions on where to go next, even in regions where no target has yet been observed. Starting from a single labeled image, our method uses patch-level DINOv2 embeddings to perform one-shot detections of both the target species and its surrounding context online. We validate our approach using real imagery collected by an AUV at two reef sites in St. John, U.S. Virgin Islands, simulating the robot's motion offline. Our results demonstrate that one-shot detection combined with adaptive context modeling enables efficient autonomous surveying, sampling up to 75$\%$ of the target in roughly half the time required by exhaustive coverage when the target is sparsely distributed, and outperforming search strategies that only use target detections.

High-resolution mapping of canopy height is essential for forest management and biodiversity monitoring. Although recent studies have led to the advent of deep learning methods using satellite imagery to predict height maps, these approaches often face a trade-off between data accessibility and spatial resolution. To overcome these limitations, we present SERA-H, an end-to-end model combining a super-resolution module (EDSR) and temporal attention encoding (UTAE). Trained under the supervision of high-density LiDAR-derived Canopy Height Models (CHM), our model generates 2.5 m resolution height maps from freely available Sentinel-1 and Sentinel-2 (10 m) time series data. Evaluated against an open-source benchmark dataset in France, SERA-H, with a MAE of 2.6 m and R2 of 0.82, not only outperforms standard Sentinel-1/2 baselines but also approaches the accuracy of methods based on commercial very high-resolution imagery (e.g., SPOT-6/7), while relying solely on freely available data. These results demonstrate that combining high-resolution ALS supervision with the spatio-temporal information embedded in Sentinel time series enables the reconstruction of spatial detail finer than the native resolution of the input imagery. By approaching the accuracy of costly commercial imagery, SERA-H opens the possibility of mapping temperate forests using publicly available data with high revisit frequency.

Detailed structural and species information on individual tree level is increasingly important to support precision forestry, biodiversity conservation, and provide reference data for biomass and carbon mapping. Point clouds from airborne and ground-based laser scanning are currently the most suitable data source to rapidly derive such information at scale. Recent advancements in deep learning improved segmenting and classifying individual trees and identifying semantic tree components. However, deep learning models typically require large amounts of annotated training data which limits further improvement. Producing dense, high-quality annotations for 3D point clouds, especially in complex forests, is labor-intensive and challenging to scale. We explore strategies to reduce dependence on large annotated datasets using self-supervised and transfer learning. Our objective is to improve performance across three tasks: instance segmentation, semantic segmentation, and tree classification using realistic and operational training sets. We observe improvements across all tasks, compared to training from scratch, evaluated with their respective metrics. For instance segmentation, self-supervised learning combined with domain adaptation improves AP50 by 16.98%. For semantic segmentation, self-supervised learning alone improves mIoU by 1.79%. For tree classification, hierarchical transfer learning improves mean Jaccard by 6.07%. To simplify use and encourage uptake, we integrated the tasks into a unified framework, streamlining the process from raw point clouds to tree delineation, structural analysis, and species classification. Pretrained models reduce energy consumption and carbon emissions by ~21%. This open-source contribution aims to accelerate operational extraction of individual tree information from laser scanning point clouds to support forestry, biodiversity, and carbon mapping.

Interest in forestry automation is growing alongside rapid advances in deep learning. In particular, tree detection and taxonomic classification are seen as core tasks required for automating field surveys and forestry equipment. These operations must often be performed in under-canopy settings, which pose challenging conditions for perception systems, including heavy occlusion, variable lighting, and dense vegetation. Despite this necessity, current work has yet to properly establish the feasibility of simultaneously executing tree detection and taxonomic classification in natural forests, as available datasets primarily focus on urban settings or on a limited number of species. To address this gap, we present SilvaScenes, a benchmark dataset for instance segmentation of tree species from under-canopy images in natural forests. Collected across five bioclimatic domains in Quebec, Canada, our dataset features 1421 trees from 28 species, with segmentation masks for pixel-precise tree trunk detection and fine-grained species annotations from forestry experts. We demonstrate the relevance and difficult nature of SilvaScenes by evaluating modern deep learning approaches, showing that while trunk segmentation is feasible, with a top mean average precision (mAP) of 69.9% and mean average recall (mAR) of 76.4%, species-aware segmentation remains a significant challenge with an mAP and an mAR of only 39.2% and 68.6%, respectively. Alongside additional experiments, we highlight key challenges, namely that species imbalance and tree occlusion figure among the most pressing issues for precise segmentation and identification. Meanwhile, higher image resolutions contribute to significant performance gains and will likely prove fundamental to these tasks moving forward. Our dataset, source code, and models will be made available at https://github.com/norlab-ulaval/SilvaScenes.