Lineages

What did an ancestral bird species sound like? Existing ancestral state reconstruction methods can infer low-dimensional traits such as morphological characters at internal nodes of a phylogenetic tree, but no one has tried to produce rich perceptual signals such as audio. Some of the challenges include inferred representations that are either too low-dimensional to decode or lie in non-generative feature spaces, so no method to date can produce ancestral audio. We introduce the first framework that generates plausible ancestral vocalizations. Our pipeline encodes bird recordings into a VAE latent space, learns a low-dimensional trait projection aligned with phylogenetic distances, performs ancestral inference in this trait space, and recovers decodable latents through an anchored inverse lift before emitting novel waveforms for each ancestral node. Because the entire pipeline stays within a decodable latent space, every internal node receives a genuinely new audio output representing plausible intermediate ancestral sounds unavailable to retrieval-based alternatives. Experiments on two phylogenetically distant bird clades, 21-species Tyrannidae and 19-species Paridae, show that our method is the only approach that simultaneously achieves genuine generation, phylogenetic consistency, and naturalistic audio quality across both datasets.

Multi-agent AI systems improve inference by spawning agents and synthesizing reports. But another agent is not another observation: apparently independent reports may descend from the same evidence, and genuinely independent evidence can produce nearly identical reports. We formalize this as an epistemic Sybil problem. A report Z is an epistemic Sybil extension relative to reports R when I(Theta; Z | R) = 0. No report-only aggregator can generally distinguish replication from independent corroboration: identical reports can warrant different posteriors under unobserved ancestry. A Gaussian shared-root model shows common ancestry does not imply complete redundancy. Repeated extraction adds information toward a source-level ceiling, and correlated extraction errors, which a shared base model can induce among independent agents, lower that ceiling further. We test these predictions with more than 20,000 controlled LLM-agent report and extraction calls on synthetic evidentiary documents. Holding one evidence root fixed while report multiplicity rises from 1 to 32 collapses naive posterior coverage from 0.940 to 0.263. Holding report count fixed while evidence-root multiplicity rises from 1 to 16 closes the gap, and the aggregators are statistically indistinguishable at k = 16. The agent's replicate extraction errors are correlated (gamma_cal = 0.719, estimated out of sample), and a correlated-extraction aggregator restores calibration accordingly. A controlled manipulation isolates representation similarity from evidential ancestry. It changes a report-space deduplication mechanism's mean inferred cluster count by 1.425 (95% CI [1.363, 1.485]), whereas a fourfold change in true ancestry changes it by only 0.040 ([-0.045, 0.120]). Collective inference should therefore track evidential ancestry and dependence, not agent or report multiplicity or similarity.

Black-box model attribution is increasingly relevant when large language models (LLMs) are served through relay and reseller APIs. A tempting low-cost signal is the prompt-token count returned by an OpenAI-compatible endpoint: two models that share a tokenizer and chat template may produce the same count sequence up to a fixed offset. Yet the validity of this signal for broader \emph{model-family} attribution has received little direct holdout testing. We conduct a frozen-threshold study over 24 labeled endpoint pairs, split evenly into a development set and an untouched holdout set, with three temporal repeats and 30 controlled texts per pair. We introduce a validity-gated result contract that distinguishes an observed dissimilarity from an uninformative measurement caused by missing usage data, rate limits, or endpoint policy. The resulting shift-invariant exact-match score perfectly separates the 12 development pairs, yielding a frozen threshold of 0.725. On holdout, however, only 6 of 12 pairs are eligible under the pre-specified three-repeat rule. Among eligible pairs, balanced accuracy is 0.75, sensitivity is 0.50 (95% Wilson interval 0.15--0.85), and specificity is 1.00 (0.342--1.00). Two same-family pairs---Qwen 3.8 and DeepSeek V4 variants---fall below the frozen threshold. Across 4,320 formal API calls, every log is replayable, while holdout contains 189 non-200 responses and 157 successful responses without prompt-token usage. The study therefore validates token-count consistency as a fingerprint of a shared \emph{tokenization stack}, but rejects its use as a standalone necessary test for model-family lineage.

Indic quality estimation (QE) and automatic post-editing (APE) data is spread across separate releases, so no single resource supports training and evaluation across tasks and language pairs on one footing. We consolidate the WMT 2020-2024 shared-task lineage with an extended English-Malayalam resource into IndicQE-APE: $126{,}754$ instances over nine directional pairs, with up to four label types aligned on the same segment, a direct assessment, a human post-edit, word-level tags and an error explanation, and a test set stratified over four difficulty axes. We benchmark six prompted LLMs and three COMET metrics on segment-level QE, and three systems on APE. Two of the axes are defined partly on direct assessment and select a compressed slice of it. Segments whose segment-level and token-level signals disagree are ranked below equally scored segments of the same language. Four-shot prompting costs every model at or below $3.4$B both correlation and output-format compliance. Unedited MT beats every APE system we run on three of the four pairs. The benchmark (https://huggingface.co/datasets/surrey-nlp/IndicQE-APE) and code (https://github.com/surrey-nlp/IndicQE-APE) are released.

Omics datasets, particularly single-cell RNA sequencing data, are high-dimensional, sparse, noisy, and dominated by zero values, making faithful low-dimensional representation challenging. Existing dimensionality-reduction methods may distort local neighbourhoods, global organization, or the cohesion of meaningful populations, with similar limitations arising in genealogical data. We introduce Contrastive Manifold Approximation and Projection (CosMAP), a graph-based unsupervised dimensionality-reduction method for producing faithful and interpretable embeddings. CosMAP extends the graph-based framework of UMAP by combining cosine-similarity neighbourhoods with temperature-normalized contrastive affinities, which are optimized in the embedding space using an attractive--repulsive objective. It further employs a two-phase refinement strategy: an intermediate higher-dimensional representation is first learned and then used to reconstruct the neighbourhood graph and initialize the final low-dimensional embedding. We evaluate CosMAP on MNIST and USPS handwritten-digit datasets, mouse retina and cortex single-cell RNA-sequencing datasets, and a large genealogical kinship dataset derived from BALSAC-CARTaGENE. Compared with state-of-the-art dimensionality-reduction methods, CosMAP produces more coherent visual representations, improves neighbourhood preservation, and provides clearer global organization of digit classes, biological cell populations, and regional genealogical patterns. These results indicate that CosMAP offers a robust framework for exploratory analysis of complex, sparse, high-dimensional data. The implementation is publicly available at https://github.com/FenosoaRandrianjatovo/CosMAP-dr.

Establishing the provenance of a language model---including its base checkpoint and possible overlap in training distributions---is a governance challenge that metadata alone cannot resolve. We introduce a training-free fingerprint based on the top-$k$ vocabulary projections of late hidden states elicited by 250 fixed knowledge probes, compared using Jaccard overlap over decoded token strings. We evaluate the method on 32 open-weight models from nine families (0.6B--32B) with documented relationships. (1)~A \emph{similarity ladder} broadly follows model relatedness: independently trained models on identical data score 0.48 raw (0.35 vocabulary-corrected), followed by shared-base fine-tunes (0.39/0.33), same-developer relatives (0.38/0.28), and models with no documented relationship (0.22/0.17). This identical-data signal persists across three organizations, two tokenizer families, and two architecture classes, and emerges within the first 1% of training before measurable task competence, suggesting a contribution from shared training data beyond capability convergence. (2)~As a nearest-neighbor \emph{lineage-retrieval} method, the fingerprint ranks the exact documented base among the top two candidates for all five R1 distillations (mean rank 1.8, MRR 0.60), including a math-specialized base not identifiable from coarse metadata. (3)~A \emph{depth ablation} shows that lineage group discrimination strengthens toward the output distribution, with AUC increasing from 0.72 at quarter depth to 0.90 at the output; using only the top 5 output tokens retains AUC 0.87. (4)~The fingerprint remains stable under quantization, with Jaccard similarity of 0.92 under int8 and 0.82--0.85 under int4, compared with a maximum cross-model similarity of 0.81 in the calibration pool. We release the probes, code, and fingerprints.

Open-weight large language models (LLMs) are increasingly developed through complex, multi-stage pipelines, leading to intricate lineage relationships that reflect model origin, ownership, and evolution. Understanding these relationships is important for model provenance, governance, and supply-chain integrity. In this work, we investigate the notion of LLM "biometrics" (analogous to human biometrics) to ask whether LLMs exhibit intrinsic fingerprints in weight space alone, without access to input data, that reveal their origin and lineage. We formulate this as a lineage discrimination problem, distinguishing among independent-origin, same-series, and shared-base models. To characterize these relationships, we propose a unified geometric fingerprinting framework that analyzes weight matrices from two complementary perspectives: (i) spectral energy, captured by singular value distributions to encode global magnitude patterns, and (ii) subspace alignment, quantified via subspace deviations to capture directional geometry. Our analysis uncovers a clear hierarchy of structural similarity in weight space: spectral energy reliably distinguishes independently trained models and different model families, while subspace alignment enables fine-grained discrimination among closely related models, including variations in dataset scale and post-training procedures. Extensive experiments on over 110 diverse open-weight LLM pairs demonstrate that weight-space geometry provides a robust and interpretable signal for model lineage, enabling coarse-grained regime separation and fine-grained discrimination within shared-base models.

Cryptographic code is critical infrastructure that must be correct, yet formally verifying production libraries remains difficult. Existing language-model proof systems solve isolated obligations with specifications and premises already given, leaving production-library verification unresolved. We present CryptoProver, an AI-based system that synthesizes internal specifications and Verus-checked proofs from high-level API contracts. Without changing executable code, CryptoProver constructs a new independent proof of curve25519-dalek and verifies RustCrypto's previously unverified chacha20 implementation against an RFC 8439 specification. These cryptographic lineages underpin deployed systems including Signal and Shadowsocks; Signal has an estimated 218M global downloads. The independent, human-led curve25519-dalek verification was developed publicly over eight months by five main contributors. Given the API contracts and a fixed trusted library of field specifications, arithmetic facts, axioms, and vstd, CryptoProver synthesizes the internal specifications and proofs in 11.4 hours with USD 466.99 in recorded API cost. CryptoProver follows a trust-first design principle: mechanical gates reject specification weakening, invented axioms, and cross-module breakage, while isolation blocks reference proof retrieval, including from git history.

An LLM agent's capability depends not only on model weights but on its harness: prompts, tools, skills, and control flow. Self-improvement loops already edit harnesses, yet single-lineage search is path-dependent and local wins often regress other tasks. We introduce DarwinX, which treats self-evolution as selection over a population of harnesses with the model frozen: a preserve-and-extend contract admits only variants that extend coverage without regressing, an archive keeps alternative lineages for recombination, and failure-, teacher-, and self-derived evidence share one edit interface. Fitness comes from each benchmark's own verifier: no gold solutions, no hand-picked winners. Across four benchmarks that progressively separate the evolution signal from the test, one loop adds about 17 points on average: Terminal-Bench 2.1 rises +7.7 to 83.2% on a matched base and to the verified frontier at 84.7% on a stronger one; TerminalWorld's held-out split reaches 68.3%, ahead of every off-the-shelf agent; WebArena-Infinity real-task pass@1 rises from 43.5% to 93.0% audit-clean; and a Terminal-Bench 2.1 harness transfers unchanged to SWE-bench Verified. What evolves is general agent competence, not benchmark-specific patches, so it survives changes of task, verifier, and base model. A frozen model need not be a fixed agent: harness selection turns evaluation compute into durable capability.

Memory, planning, reflection, and tool use are often compared as feature labels, obscuring the control semantics that determine how an agent actually runs. This review connects ten historical cognitive architectures, eight language-agent runtime families, and forty-two mechanism-focused modern systems. We reconstruct each mechanism through state, control, transition, persistence, failure, learning, and resource governance, then code evidence relation (E1-E4) separately from migration depth (D0-D4). The resulting landscape is uneven. Modern agents have operationalized substantial parts of adaptive memory, failure recovery, dynamic team selection, workflow search, skill induction, resource scheduling, and uncertainty-conditioned action, although often through independent convergence rather than documented inheritance. The strongest remaining opportunities lie in couplings among mechanisms. Closest-baseline screening closes one proposed gap: GraSP already combines calibrated multi-skill selection, typed compilation, verification, bounded repair, and replanning or ReAct fallback. Five residual bundles remain: activation with latency and action utility; typed impasse with isolated substates and resolution compilation; bounded content competition with broadcast and admission learning; persistent intention with reconsideration and live method authority; and uncertainty with resource allocation, interruption, and stopping. We contribute a distinctive-mechanism catalog, an auditable evidence-depth framework, and a falsifiable agenda for testing these bundles as composable runtime invariants.

Large-scale calcium imaging has created an opportunity to build foundation-style models for neural population dynamics, but a central question remains unresolved: \textbf{whether a model pretrained on one collection of recordings can generalize to new datasets, experimental paradigms, and even species.} Existing approaches are often designed for specific tasks and evaluated on a single dataset, making it unclear whether their learned representations are reusable for new calcium trace datasets. To tackle this gap, we present \textbf{CAPT}, a \textbf{C}ontinuous \textbf{A}utoregressive \textbf{P}opulation \textbf{T}ransformer for calcium population dynamics. CAPT models continuous calcium traces directly through a continuous patch tokenization strategy and is trained autoregressively, enabling end-to-end pretraining and adaptation to diverse downstream tasks. We first pretrain CAPT on a large-scale mouse calcium imaging dataset and evaluate its transferability across independent mouse, larval zebrafish, and \textit{C. elegans} datasets collected by different laboratories. In these transfer settings, the pretrained backbone is frozen and only adaptation modules are updated. Across neural population forecasting and behavior decoding tasks, CAPT consistently outperforms specialized and general-purpose baselines. Alongside predictive performance, multimodal analyses using NeuroPAL annotations in \textit{C. elegans} datasets show that CAPT embeddings form a shared functional space across datasets and capture anatomical cell-identity-related structure. These results suggest that the continuous autoregressive modeling opens up possibilities for a simple route towards general-purpose neural foundation models for calcium imaging, which can generalize across datasets, experimental paradigms, and species. Code is available at https://github.com/TSuXinH/CAPT.

Large language models increasingly write both code and the tests meant to check it; coverage records what ran, not what was verified. We study an adversarial test-hardening loop under a mechanical oracle: a Tester model writes tests, mutation testing names surviving injected defects, and a Critic model writes tests to kill exactly those, with every verdict decided mechanically, so no model judges another's output. In Experiment 1, on five Python subjects (one same-lineage-loop cell could not be scored), the loop killed 105 mutants that one-shot generation missed and lost none, and the cross-lineage-Critic question returned a pre-declared null. The central finding was an autopsy: an earlier analysis reported a cross-lineage effect at p = 9.5e-66 that was an instrument artifact, an output cap silently truncating the verbose model, caught only by adversarial review of the completed analysis. Review then found a further confound, each arm resampling its own initial suite; Experiment 2 removes it. Under a pre-registered frozen-shared-round-0 design (five replicates on each of four subjects, seeds committed in advance), same-lineage Critic rounds killed 78% of the survivors the frozen initial suite left standing (mean incremental kill rate 0.783, 95% cluster-bootstrap interval [0.592, 0.935]), a within-replicate causal estimate; the cross-provider configuration showed a positive pilot difference (rate gap 0.178, 95% interval [0.039, 0.347]; magnitude dominated by a single replicate) at 5.5x lower arm cost. This compares two named model-provider-harness configurations, not an isolated lineage effect: part of the gap is one configuration's receipted operational failures, including truncation recurrences, now detected and scored rather than laundered. Cross-model comparisons can inherit the asymmetries of the harness that runs them. We release both protocols, all receipts, and the analysis code.

This paper frames Generative Artificial Intelligence (AI) not as an unprecedented technological rupture, but as an industrial-scale manifestation of a deeply rooted historical process. Through a genealogy of generative arts, it shows how AI's questions on authorship and creativity have precise historical precedents. A taxonomy of generative systems is proposed across three functional categories (medium, artwork, instrument), the attribution of which is editorial rather than ontological. From individual cognitive atrophy to Model Collapse, the systemic risks of creative automation are identified; environmental enrichment is proposed as an antidote. The role of the artist undergoes a radical metamorphosis: from craftsman of the object to entropic agent, systems designer, explorer, and negentropic curator. This pipeline-based taxonomy rests on a specific premise: the algorithmic system remains medium, instrument, or artwork, while creative agency resides in the humans distributed along it. Algorithmic Repetition is introduced as the aesthetic degeneration of aligned generative systems; the Benjaminian aura does not dissolve in the generative era but condenses upon the productive system. Manifestation is proposed as a third ontological status for generative works, transcending the dichotomy between original and copy. To support the proposed theses, two complementary aspects are examined: the radicalization of distributed authorship; and the reevaluation of older generative models, whose instability constitutes an aesthetic degree of freedom lost by recent ones.

Reconstructing lineages from live-imaging microscopy requires linking cell detections across time, including through cell divisions. A common approach is to construct a candidate graph and associate cell segmentations (nodes) across frames. However, these and other existing methods overlook two structural obstacles in candidate tracking graphs: (i) cell divisions entangle distinct lineage paths in the node embedding space, and (ii) edges sharing a node have near-random label agreement, so the candidate-graph topology carries no useful information for graph neural networks to aggregate. We propose the \textbf{Higher-Order Cell Tracking Transformer} (HOCT), an edge-centric architecture in which candidate cell links attend to one another under a 3D geometric prior, resolving both issues. Evaluated on the Cell Tracking Challenge and a bacteria division benchmark, HOCT achieves state-of-the-art results without deep pre-trained image encoders. Moreover, the proposed approach is easier to fine-tune, quickly reducing tracking errors by 59% with 400 annotations in a human-in-the-loop setting, outperforming LoRA fine-tuning of competing transformer baselines (6.75% improvement).

The lineage graph of open-weight language models is self-reported: Hugging Face's base_model metadata field is optional and unverified, and over 60% of Hub models document no parentage at all. Methods for detecting lineage from weights exist in the research literature, but each ships as paper code tied to one signal and one experiment; when a provenance dispute breaks, the analysis is redone by hand. This report describes modelDNA, a tool that fingerprints a model from roughly 100-300 MB of ranged HTTP reads (instead of a full 15 GB download for a 7B model), compares the fingerprint against a reference database of foundation models across four published signal families, and returns one of eight verdict classes with a calibrated probability, preferring honest abstention to confident error. On a benchmark of 15 real Hub models with org-documented parentage, judged against 8 candidate bases (13 positives, 107 hard negatives), the system achieves AUROC 1.0, zero false positives at its reporting threshold, and 13/13 correct top-1 parent attribution. The report's second contribution is merge decomposition. Every mainstream weight-merging method is (near-)linear per tensor, and fingerprint sample positions are deterministic functions of tensor identity, so a merged model's fingerprint is the same linear combination of its parents' fingerprints. Mixture weights can therefore be recovered from fingerprints alone by sum-to-one constrained least squares. Against merges with published mergekit configurations as ground truth, the method recovers a slerp merge's layer-interpolation curves at r = 0.999 and a dare_ties merge's mixture weights to within 0.011 of the published values, without downloading any weights beyond the fingerprints. All fingerprints, benchmarks, and the inferred lineage graph of 55 models are public and reproducible offline.

Large language models (LLMs) are increasingly consumed through opaque serving chains - API aggregators, resellers, and inference providers - in which the client has no technical means to confirm that the model answering is the model advertised, and recent audits show that a substantial fraction of commercial endpoints deviate from the vendor's reference weights. Existing identification techniques require long generated texts, token-level log-probabilities, adversarially crafted prompts, or the model owner's cooperation. We show that far weaker evidence suffices. We define a behavioral fingerprint of an LLM as the empirical distribution of its answers to trivial one-word prompts - "name a random number between 1 and 100" - collected across four languages at a cost of one output token per query. Measuring 165 models served via a large commercial aggregator (OpenRouter), we find that (i) these distributions are highly non-uniform (median cell entropy 1.0 bit) and model-specific: split halves of the same model's samples lie an order of magnitude closer than samples of different models; (ii) Jensen-Shannon divergence between fingerprints recovers model lineage, assigning a model to its documented family with 59.5% leave-one-out accuracy against an 18.4% chance rate; and (iii) a biometric-style verification protocol achieves a 7.3% equal error rate with the full 40-cell battery, and below 11% with eight probe cells - roughly a hundred single-token queries per audit. We further report ecosystem anomalies, including a proprietary-branded flagship endpoint distributionally indistinguishable from an open-weight Qwen model. The protocol, prompts, raw data, and analysis code are released for reproduction and operational use.

Scientific ideas rarely start from a blank page. They inherit mechanisms, repair known limitations, and recombine pieces of earlier work, much like biological genomes. Current benchmarks still say little about whether AI systems can follow this inheritance structure. We present IdeaGene-Bench (IG-Bench), a benchmark for scientific lineage reasoning and lineage-grounded idea generation. IG-Bench is organized around the IdeaGene framework: each paper or proposal is represented as a set of minimal, typed, evidence-grounded Idea Genome objects, and a GenomeDiff aligns these objects to record inheritance, mutation, loss, external import, and novel insertion under six operational evolutionary dynamics. The benchmark contains 1,961 golden lineage traces, 1,085 curated Idea Genome objects, and 920 pairwise GenomeDiff records across 10 scientific domains. It supports two evaluations. IG-Exam (42 task types, 1,029 instances) tests closed-form lineage reasoning across Idea Genome abstraction, inheritance tracing, evolutionary reasoning, and lineage verification. IG-Arena evaluates generation with a lineage-conditioned Population-Evolution Score(PES), asking whether a proposal can be inserted as a coherent descendant of a given lineage population: it should inherit the right Idea Genome objects, vary meaningfully from nearby work, and offer selection value for future research. Experiments on 14 LLM-based scientists expose a compositional bottleneck. The strongest system reaches only 27.3% exact accuracy on lineage reasoning, and structured lineage context reshuffles system rankings rather than helping every participant uniformly.

High-volume structured extraction pays a large model's latency on every item, so distilling the task into a small on-device model is attractive: comparable output at a fraction of the time and cost. We measure what that distillation actually delivers, per sub-task. Each news article is mapped to one JSON object with a short summary and five categorical labels. We distill an 8B reasoning teacher (deepseek-r1:8b) into a 0.6B student (Qwen3-0.6B; QLoRA, three seeds), and add two teacher controls: a same-size non-reasoning teacher and a larger managed pipeline. A blinded, reference-free, three-judge panel scores every arm against the full article, alongside two non-distillation baselines, few-shot prompting and constrained decoding. The student runs at about 0.8 s per article against the teacher's 39 s, and recovers 58% of the base-to-teacher gap on summary quality, beating its primary baseline (constrained decoding) by +16.8 points and few-shot prompting by a secondary +4.9. A same-size non-reasoning teacher trains a student no better than the untuned base, so the summary gain follows from the teacher's reasoning nature rather than its scale. Capabilities then split by teacher: the reasoning teacher transfers writing quality and the managed pipeline transfers label diversity, while a same-size instruction teacher's students stay more grounded on the 22 short, thin-source articles in the 93-item test set (74 versus 55 faithful), where the reasoning-lineage student fabricates. That grounding difference is a consistent ordering rather than a significant aggregate effect, and the subgroup is small, so we report it as a direction. Because no single engine wins every field, the deliverable is a per-field routing map for on-device enrichment.

Large language model (LLM)-assisted software security operates at a difficult boundary: the vulnerability-analysis terminology needed for legitimate code review, triage, and repair can closely resemble terminology associated with misuse. Existing safety and cybersecurity evaluations are difficult to interpret in this setting because they often compare unrelated model families, thereby conflating safety behavior with differences in architecture, scale, training data, and deployment. To isolate this factor, we study safety state: whether refusal behavior remains intact (Aligned) or has been refusal-ablated (Abliterated) within same-lineage models. We ask how this safety state affects defensive utility across software-security workflows. We compare aligned instruction-tuned models with publicly released refusal-ablated descendants from two model families, Gemma and Qwen. We evaluate Aligned and Abliterated states on vulnerability detection, CWE attribution, vulnerable-line localization, root-cause localization, and executable patch validation. We further treat prompt wording as a controlled framing dimension: prompts begin with neutral code-review language, add authorization context, and vary the density of cybersecurity terminology. In a Gemma-based Java/Vul4J repair-validation study, Abliterated achieves higher early-stage validation rates, with 67.8%, 65.0%, and 32.8% of patches judged usable, successfully applied, and successfully compiled, respectively, compared with 29.9%, 24.9%, and 9.0% for Aligned. In the Qwen pair, Abliterated improves localization performance, increasing line-level F1 from 2.08% to 3.91% and Top-1 accuracy from 4.10% to 6.95%. These findings suggest that evaluations of LLM-based security assistants should jointly measure whether models respond, whether their usable responses are correct, and whether their outputs remain actionable across the engineering workflow.

Trusted monitoring is a central defense in AI control: a cheaper trusted model scores an untrusted model's actions for sabotage, and the most suspicious are audited or deferred. Such monitors are evaluated against one or two untrusted models, and the accuracy is reported as a property of the monitor. We ask whether it is partly a property of the pairing. We make the untrusted policy family the controlled axis: we fit a monitor on family A's transcripts, apply it to family B, and decompose the cross-family AUROC into how obvious each family's sabotage is, how capable each monitor is, and the residual own-family advantage after both are removed: the interaction. On code-backdoor transcripts the interaction is positive and survives the dominant confounds: +0.172 (95% CI [+0.158, +0.185]) on four open-weight families on a strict leak-free basis, holding across an eight-family matrix spanning four frontier vendors, blatancy-matched controls, a trained transcript-reading monitor up to 34B parameters, and a second code benchmark. The gap is geometric: each lineage's sabotage occupies a different scoring direction, and rotating the monitor's scoring direction toward the target lineage recovers most of the lost detection while a matched random rotation recovers nothing. At a 1% audit budget under defer-to-trusted, an off-lineage monitor catches 19% of attack attempts where an in-lineage monitor catches 41% at the same audit cost, a +21.7-point gap. Control evaluations should report cross-family transfer matrices: a single-pairing accuracy overstates the safety a monitor delivers against a lineage it was not calibrated on. We give a four-step protocol that acts on the gap, with each step a measured result.

The rapidly growing repository of publicly available large language models (LLMs) presents significant challenges for systematic management and quantification at scale, such as model lineage tracing, licensing, and evaluation. However, task-specific benchmarks are insufficient for this setting, as LLMs differ widely in architectures, scales, and training procedures. To address this challenge, we adopt spectral shape-based metrics for managing and quantifying LLMs based on Heavy-Tailed Self-Regularization theory. Our approach uses the shape information of the weight empirical spectral density as a compact spectral signature of each model. This signature captures intrinsic properties of pretrained models and remains robust during post-training, making it suitable for model-level analysis. In addition, this metric is data-free, computationally-efficient, and scale-invariant, enabling large-scale analysis in practice. Moreover, we curate a large and diverse model corpus consisting of major open-source LLM families, and use it to systematically benchmark spectral and non-spectral metrics across models and downstream tasks. We show that our spectral signature supports the tracking of the model lineage, the unsupervised clustering of similar models, and the quantification of the model performance. Overall, the proposed spectral signature provides a meaningful proxy for broad performance trends across LLMs, enabling efficient organization, comparison, and analysis of large model collections.

A growing family of training-free solvers -- FlowDPS, FLOWER, PnP-Flow and their diffusion ancestors (DPS, DAPS) -- repurpose a pretrained flow-matching prior to solve imaging inverse problems by adding a measurement-guidance term to the deterministic probability-flow ODE. Despite strong empirical results, what these per-step corrections actually approximate -- and how far the resulting samples are from the true posterior $p(x\mid y)$ -- has not been characterized. We give a posterior-transport account of flow-based inverse problem solving. Our starting point is a simple but consequential fact: for a \emph{deterministic} flow prior, Bayesian conditioning is realized entirely by a \emph{reweighting of the source distribution}, not by a drift correction; pushing the reweighted source through the \emph{unmodified} velocity field yields exact posterior samples. From this we show that trajectory-guidance solvers can be read as the minimum-kinetic-energy \emph{correction} field needed to morph the unconditional source into the posterior, and that FlowDPS / FLOWER / PnP-Flow correspond to distinct zeroth-order / Gaussian / proximal approximations of this single object; we bound the resulting posterior bias in Wasserstein distance. A controlled $2$D study with a closed-form posterior confirms the theory decisively: source reweighting matches the true posterior to the Monte-Carlo floor on every metric, whereas trajectory guidance incurs $200$--$800\times$ larger error and collapses posterior modes, \emph{regardless of guidance strength}. Guided by the analysis we propose a cheap, principled velocity-correction solver that is competitive across two in-domain priors (AFHQ, CelebA) and two out-of-distribution settings while, unlike point-estimate source-space optimizers, producing diverse posterior samples with uncertainty that correlates with reconstruction error.

Binary data factorization is common, but real-valued methods ignore discreteness and yield hard-to-interpret factors. Boolean Matrix Factorization (BooMF) instead decomposes a binary matrix into two lower-rank binary matrices via logical AND and OR, expressing the data as a Boolean disjunction of interpretable patterns. In cancer genomics, BooMF can reveal coordinated feature changes that may drive tumor evolution, unlike rotational or additive decompositions. Most existing BooMF methods are heuristic, greedy, sensitive to initialization, prone to local optima, and do not support principled model selection or uncertainty quantification. We introduce Bayesian Boolean Matrix Factorization (BBMF), a fully conjugate generative model with sparsity-inducing priors. It enforces Boolean constraints, yields interpretable latent factors with coherent uncertainty quantification, and admits Gibbs sampling with closed-form full conditionals. Because cancer evolution often involves widespread, near-simultaneous chromosome-number changes (e.g., whole-genome duplication followed by instability and selection), Boolean factorizations capture these patterns more naturally than additive models. Applied to arm-level copy-number alteration data in multiple myeloma, where entries indicate presence/absence of chromosomal-arm amplifications, BBMF finds a small set of interpretable bicliques linking patient subsets to recurrently co-altered chromosomal arms, providing a compact, biologically meaningful summary of tumor heterogeneity and demonstrating BBMF's utility for uncovering discrete latent structure in complex binary data.

Recent advances in large language models (LLMs) have produced many specialized multimodal LLMs (MLLMs) that share common foundational LLMs, forming distinct model lineages. It remains unclear whether a fundamental behavioral link exists between the foundational LLMs and downstream variants. We investigate this question by quantifying head-level context-truthfulness scores. Across diverse LLM and MLLM lineages, including Vicuna-, Qwen2.5-, LLaMA2-, and Mistral-based models, we find that Truth Scores are strongly preserved within model families, even after instruction tuning or multimodal adaptation. We further show that this inheritance is consistent with attention-head weight preservation, and that context-truthful heads attend to query-relevant evidence. Building on this finding, we propose TruthProbe, a soft-gating strategy that amplifies context-truthful heads while preserving other head contributions. TruthProbe improves contextual truthfulness on HaluEval and reduces multimodal hallucination on POPE and CHAIR, with base-LLM Truth Scores transferring effectively to their fine-tuned LLM and MLLM descendants. Code is available at https://github.com/miso-choi/TruthProbe.

What made useful knowledge cumulative was not discovery alone but the institutions that transmitted it. We provide the first exhaustive structural measurement of the network through which upper-tail human capital passed from master to student across a millennium. Using 470,000 mentor-student records from Wikidata (which integrates the Mathematics Genealogy Project and MacTutor Archive), and all 64 historical Fields Medalists as a fixed, ex ante tracer set, backward traversal yields a directed acyclic graph of 25.5 million paths reaching 57 generations. We document two institutional transitions. First, a 17th-century watershed concentrates lineage traffic on Leibniz: 47 of 64 lineages pass through him with a 10:1 downstream-to-upstream ratio, and seven independent attributes -- learned-society membership (a 46-fold rise per scholar), field, language, employer, institutional diversification, student production, and diffusion entropy -- re-organize coherently across the same window. This is the network signature of Mokyr's Republic of Letters, and it reframes the Newton-Leibniz priority dispute as a distinction between the possession and the transmission of upper-tail human capital: it is transmission that generates the spillovers on which growth depends. Second, 84% of lineages converge upstream on five 12th-13th-century Islamic and Byzantine scholars before terminating at an 11th-century boundary -- the ``Monastery Wall'' -- at which personal academic mentorship first becomes record-generating in Europe. Our claims are descriptive-structural, not causal. Because exhaustive traversal at this scale defeats standard tools, we also contribute a deterministic, algebraic graph-traversal instrument whose measurement bias we characterize in closed form, and report one emergent property of independent methodological interest.

Can a language model improve from plain text sampled from itself, with no prompts, no teacher, no verifier, and no reward model? Yes, but only when the synthetic corpus is compatible with the student, a relational property of the source-student pair rather than an intrinsic property of the data. We call this the latent capability resurfacing hypothesis: weak self-training can amplify capabilities already present in the pretrained model, but only under this compatibility condition. We study this in the minimal setting of prompt-free unconditional self-training, where base language models are fine-tuned on text generated from the BOS token alone, with no task specification or external supervision. We report three findings. First, synthetic utility is relational rather than intrinsic: self-generated data is the most effective source, same-lineage transfer outperforms stronger but differently trained sources, and cross-family transfer is substantially weaker. Second, common intrinsic proxies fail: neither benchmark-level semantic similarity nor average per-token likelihood under the student predicts which corpora help. Third, this regime produces a surprising byproduct. In controlled Pythia experiments, capability and verbatim memorization decouple: benchmark utility is preserved or improved while held-out exact-match extraction drops by over 95 percent, with no forget set, privacy objective, or targeted unlearning. Together, these results suggest that prompt-free self-training works by amplifying what the student already knows, not by importing structure from the data. They also reveal a regime in which capability and verbatim memorization can be separated without any explicit unlearning objective.

LLM-based agents are increasingly used to generate GPU kernels, but they often know what optimizations to try without knowing when those optimizations are sound. We introduce KLineage, which learns this missing "when" knowledge from expert kernels: instead of relying on forward rollouts, KLineage walks expert implementations backward through validation-gated simplifications and reverses each accepted step into a reusable optimization skill. Each skill records not only the optimization intent, but also where it applies in code, what conditions made it valid, what effect it had, and what failures its assumptions avoid. A downstream LLM materializes these skills on new code surfaces under the same compile/correctness/profile gate. On five expert workloads across two NVIDIA architectures, these lineage-derived skills serve as an effective optimization curriculum, exceeding recent memory-based LLM-kernel baselines in both final kernel quality and optimization efficiency under the same fixed budget. We additionally use a separate 22-instance held-out check as a sanity test against source-case memorization.

The proliferation of Reinforcement Learning from Verifiable Rewards (RLVR) datasets has exacerbated provenance collapse due to unclear lineage among existing datasets. To bridge this fragmented RLVR data landscape, we propose Atomic-source Tracing via Lineage-Aware Search (ATLAS), a systematic framework for tracing RLVR datasets back to their atomic sources, attributing over 99.7% of 1.45M instances to 20 atomic sources. Our analysis reveals that most RLVR datasets are variants of a small set of shared upstream sources, with few introducing genuinely new data, and many facing data contamination risks. These findings naturally motivate us to curate a new RLVR dataset, DAPO++, and to benchmark existing datasets from a lineage-aware perspective. To this end, we propose Source-level Counterfactual Attribution (SCA) as a guiding principle to curate a decontaminated training dataset with concentrated learning signals. Essentially, SCA measures a sample's marginal utility by comparing per-atomic-source RL checkpoints against a shared base model. Building upon these attribution signals, we further design a composite dataset quality score Q that strongly correlates with downstream RLVR performance. Experiments on Qwen3 series models verify that DAPO++ consistently improves performance on held-out benchmarks, while Q reliably predicts downstream RLVR training effectiveness. Our code and data is available at https://github.com/Celine-hxy/ATLAS.

Single-cell trajectory inference from destructive time-course snapshots is fundamentally ill-posed: neither cross-time cell correspondences nor continuous trajectories are observed, so the snapshot distributions alone do not uniquely determine the underlying dynamics. Existing optimal transport and flow-based methods typically couple cells by Euclidean proximity at observed clock times, which can misalign trajectories when development is asynchronous and cells sampled at the same experimental time occupy different latent pseudotime stages. We propose PACE, a trajectory inference framework that recovers geometry-consistent continuous transport dynamics from destructive time-course snapshots through three coupled components. First, PACE constructs a state- and time-dependent anisotropic Riemannian metric that assigns low transport cost along locally supported tangent directions while penalizing normal velocity components. Second, it alternates between refining cross-time couplings under the induced path-action cost and fitting endpoint-preserving neural bridges between adjacent snapshots. Third, it distills the learned bridge dynamics into a global continuous-time velocity field over cellular states. Across seven controlled and biological datasets covering nine held-out reconstruction experiments, PACE achieves the strongest overall reconstruction performance, reducing MMD, Wasserstein-1 distance, and Wasserstein-2 distance by 23.7% on average relative to the strongest competing baseline. PACE also improves RNA-velocity alignment by 15.4% on an embryoid body differentiation benchmark, without requiring explicit cell pairing, lineage tracing, or RNA-velocity supervision during training. Code is available at https://github.com/AI4Science-WestlakeU/PACE.

We introduce MemLineage, a defense for LLM agent memory that attaches both cryptographic provenance and LLM-mediated derivation lineage to every entry. Recent and concurrent work shows that untrusted content can be written into persistent agent state and re-enter later sessions as an instruction; the remaining systems question is how to preserve useful memory recall while preventing such state from justifying sensitive actions. MemLineage treats this as a chain-of-custody problem rather than a filtering problem. It is a six-module design around an RFC-6962 Merkle log over per-principal Ed25519-signed entries: a weighted derivation DAG records which retrieved entries influenced each new memory, and a max-of-strong-edges propagation rule makes Untrusted-Path Persistence hold for any chain whose attribution edges remain above threshold. The sensitive-action gate then refuses dispatches whose active justification descends from an external ancestor, while still allowing benign recall. We evaluate three defense cells against three memory-poisoning workloads on a deterministic mechanism-isolation harness; MemLineage is the only configuration in that harness that drives all three columns to zero ASR, while sub-millisecond per-operation overhead keeps it well below the noise floor of any LLM call. A Codex-backed AgentDojo bridge further separates strong-model behavior from defense-layer behavior: under an intentionally vulnerable tool-output profile, no-defense and signature-only baselines fail on all six banking pairs, while all MemLineage rows reduce strict AgentDojo ASR to zero. The core deterministic artifacts are byte-equal CI-verified; hosted-model AgentDojo and live-model sweeps are recorded as auditable logs rather than byte-pinned artifacts.

Recent interpretability work has identified model-internal handles on post-trained behavior, including refusal directions, assistant/persona axes, and sparse chat-tuning features. These results localize where behaviors can be read out or controlled, often in middle-to-late layers. We ask how earlier computation and the late stack cooperate to turn those differences into next-token margins. To test this, we introduce first-divergence cross-patching: at the first token where pretrained base (PT) and instruction-tuned (IT) checkpoints disagree, we cross each model's earlier-layer state with each model's late stack. The diagnostic separates training recipes: same-base instruction-following descendants show late effects that depend on their own earlier-layer state, while OpenMath2 math-domain SFT and controlled code/biomed CPT controls with verified domain learning do not; for OpenMath2, the late effect is already largely portable from base earlier-layer state. Across five dense families (4B-32B), the IT late stack adds +0.76 logits from PT upstream and +2.44 from IT upstream, giving a +1.68 interaction that is positive in every family. Thus the late stack has a real PT-upstream effect, but its larger effect in the IT checkpoint appears only when it reads its own post-trained upstream state. Sparse features in final MLP layers partially mediate the effect and are driven by upstream patches, supporting a handoff from earlier state to final-layer feature activation to IT-token margin. Forced-token scoring shows that the local token choice can change later exact-answer success. Operationally, paired-checkpoint studies that localize a difference to late layers should test whether it survives under the other checkpoint's upstream state before treating the late stack as self-contained.

We study auto research as a closed empirical loop driven by external measurement. Each submitted trial carries a hypothesis, an executable code edit, an evaluator-owned outcome, and feedback that shapes the next proposal. The output is not a generated paper or a single model checkpoint, but an auditable trajectory of proposals, code diffs, experiments, scores, and failure labels. We instantiate this loop with specialist agents that partition recipe surfaces and share measured lineage across trials. The central empirical finding is that lineage feedback lets agents turn evaluator outcomes, including crashes, budget overruns, size failures, and accuracy-gate misses, into later program-level recipe edits rather than one-shot suggestions. Across 1,197 headline-run trials plus 600 Parameter Golf control trials after one-time setup and launch, humans did not choose proposals, edit recipes, override scores, or repair failed trials during the search. In the three headline runs, the same submitted-trial loop reduces Parameter Golf validation bpb by $0.81\%$, raises NanoChat-D12 CORE by $38.7\%$, and reduces CIFAR-10 Airbench96 wallclock by $4.59\%$, with each task measured by its own external evaluator and legality checks. The trace includes a strict architecture-domain audit of 157 headline-run submissions and program rewrites such as a NanoChat attention-kernel path change. Within this scope the loop autonomously writes code, submits experiments, absorbs feedback, applies and combines known techniques inside each environment, and improves public starting recipes.

The growing capabilities of large language models (LLMs) have driven their widespread deployment across diverse domains, even in potentially high-risk scenarios. Despite advances in safety alignment techniques, current models remain vulnerable to emerging persona-based jailbreak attacks. Existing research on persona-based jailbreak has primarily focused on attack iterations, yet it lacks systemic and mechanistic constraints on the defense side. To address this challenge, we propose Persona-Invariant Alignment (PIA), an adversarial self-play framework that achieves co-evolution through Persona Lineage Evolution (PLE) on the attack side and Persona-Invariant Consistency Learning (PICL) on the defense side. Theoretically, PICL is grounded in the structural separation hypothesis, using a unilateral KL-divergence constraint to enable the structural decoupling of safety decisions from persona context, thereby maintaining safe behavior under persona-based jailbreak attacks. Experimental results demonstrate that PLE efficiently explores high-risk persona spaces by leveraging lineage-based credit propagation. Meanwhile, the PICL defense method significantly reduces the Attack Success Rate (ASR) while preserving the model's general capability, thereby validating the superiority and robustness of this alignment paradigm. Codes are available at https://github.com/JiajiaLi-1130/PIA.

Evolutionary methods have long been useful for analysis and explanation in genetics, biology, ecology, and related fields. In this work, we extend these methods to neural networks, specifically large language models (LLMs), to better analyze and explain relationships among models. We show how relating weights to genotypes and output text to phenotypes can improve our understanding of model lineage, important datasets, the roles of different model layers, and visualization of model relationships. We demonstrate this in a controlled experiment, where our estimated evolutionary trees reliably recover the topology of the ground-truth training tree. We further identify the most important weight layers according to weight differences and show through phenotypic experiments that one training dataset appears to contribute more useful information than the others. Finally, we generate an unsupervised evolutionary tree of black-box foundation models. Throughout, we provide visualizations that support a clearer understanding of evolutionary relationships among LLMs.

Teams of LLM agents increasingly collaborate on tasks spanning days or weeks: multi-day data-generation sprints where generator, reviewer, and auditor agents coordinate in real time on overlapping batches; specialists carrying findings forward across session restarts; product decisions compounding over many review rounds. This requires agents to share, evaluate, and combine each other's cognitive state in real time across sessions. We call this cross-session agent-to-agent cognitive collaboration, distinct from parallel agent execution. To enable it, three problems must be solved together. (P1) Each agent decides field by field what to accept from peers, not accept or reject whole messages. (P2) Every claim is traceable to source, so returning claims are recognised as echoes of the receiver's own prior thinking. (P3) Memory that survives session restarts is relevant because of how it was stored, not how it is retrieved. These are protocol-level properties at the semantic layer of agent communication, distinct from tool-access and task-delegation protocols at lower layers. We call this missing protocol layer "semantic infrastructure," and the Mesh Memory Protocol (MMP) specifies it. Four composable primitives work together: CAT7, a fixed seven-field schema for every Cognitive Memory Block (CMB); SVAF, which evaluates each field against the receiver's role-indexed anchors and realises P1; inter-agent lineage, carried as parents and ancestors of content-hash keys and realising P2; and remix, which stores only the receiver's own role-evaluated understanding of each accepted CMB, never the raw peer signal, realising P3. MMP is specified, shipped, and running in production across three reference deployments, where each session runs an autonomous agent as a mesh peer with its own identity and memory, collaborating with other agents across the network for collective intelligence.

Healthcare disparities persist across socioeconomic boundaries, often attributed to unequal access to screening, diagnostics, and therapeutics. However, this perspective highlights that critical biases can emerge much earlier, during data collection and research prioritization, long before clinical implementation, particularly in studies focused on molecular and omics data. A vast number of studies focus on collecting omics data, but the demographic information associated with these datasets is often not reported, and when it is reported, it reveals substantial biases. An automated analysis of 4514 PubMed-indexed omics publications from 2015 to 2024, examining reporting across multiple demographic dimensions, reveals limited reporting overall; for example, only 2.7% of studies report ancestry or ethnicity information and geographic origin reporting is limited to 2.5%. Analysis of large-scale datasets commonly used for model training, such as CellxGene and GEO, reveals substantial population bias where European-ancestry data dominates. As biomedical foundation models become central to biomedical discovery with a paradigm in which base models are pretrained on large datasets and reusing them repeatedly for many different downstream tasks, they risk perpetuating or amplifying these early-stage biases, leading to cascading inequities that regulatory interventions cannot fully reverse. We propose a community-wide focus on three foundational principles: Provenance, Openness, and Reliability through Evaluation Transparency. Together, these principles can help make biases and limitations more visible to model developers and users, supporting more informed model development, evaluation, and deployment decisions in biomedical AI.

Large language models can write scientific code, but direct paper-to-program translation remains fragile when correctness depends on tacit conventions rather than explicit equations. We frame this as a knowledge-externalization problem: index choices, gauges, fermionic signs, contraction order, validation gates, and scaling constraints must be made explicit before code generation. We evaluate a multi-stage, human-in-the-loop workflow on two quantum many-body tasks. DMRG from Schollwoeck's pedagogical review serves as calibration: specification-guided implementations pass in all 16 model pairings, compared with 6/13 direct attempts, and a prose-specification ablation shows that externalized content, not LaTeX form, is the active ingredient. Pfaffian conversion of HFB states to MPS from the five-page Letter by Jin et al. serves as the stress test: the archived runs use a closed-world NumPy/SciPy/Matplotlib protocol, with no TeNPy, TeMFpy, or external implementation code supplied to the agents, so success depends on reconstructing tacit sign, gauge, ordering, and scalability conventions within a restricted dependency setting. Here the workflow yields 11/26 audited passes, while direct prompting yields none. Cross-specification transfer is asymmetric: non-GPT specifications implemented by GPT 5.5 pass 4/4, whereas GPT 5.5 specifications implemented by the tested non-GPT models fail 4/4. The contrast supports a two-bottleneck picture. Externalization resolves the first bottleneck -- paper-to-code ambiguity -- well enough to make DMRG reproducible and Pfaffian-MPS auditable. The remaining failures expose a second bottleneck in implementation-model capability. Iterative meta-specification moves this boundary but does not eliminate it. The resulting Paper-to-Program Many-Body skill is both a reusable implementation protocol and a diagnostic instrument for AI-assisted many-body programming.

Multi-hop kinship reasoning is a natural testbed for LLM compositionality, but existing benchmarks (notably CLUTRR) cover only the descriptive Eskimo system. We introduce KinshipQA, a procedurally-generated benchmark covering seven anthropologically-documented kinship systems (Eskimo, Sudanese, Hawaiian, Iroquois, Dravidian, Crow, Omaha) and up to six reasoning hops, with a tunable simulator horizon that eliminates exact-instance pretraining overlap. Evaluating six LLMs, we find a 40.9% accuracy drop when reasoning shifts from biological multi-hop to culturally-marked classification on the five non-descriptive systems. The drop holds for every non-descriptive system and is largest for the two skewing systems (Crow, Omaha), persists under chain-of-thought and few-shot prompting, and compounds with depth: at 5--6 hops cultural override falls to 10.6% while biological composition over the same chains remains at 58.6%. Under identical rule access humans reach 89.0% versus 50.7% for LLMs, so the questions are reliably solvable once the rule is supplied. Two follow-up experiments suggest distinct contributors. A fictional-rule control swapping system labels and kin terms for invented strings raises accuracy by 6.1%, implicating familiar English surface forms. An in-context-rule probe prepending the override rule helps skewing systems (+17.1%) but hurts non-skewing systems whose baseline already exceeds about 60% (-13.4%), consistent with a missing skewing prior alongside rule interference where the model already has a working approximation. Our code and data are publicly available on GitHub.

The URIEL+ linguistic knowledge base supports multilingual research by encoding languages through geographic, genetic, and typological vectors. However, data sparsity (e.g. missing feature types, incomplete language entries, and limited genealogical coverage) remains prevalent. This limits the usefulness of URIEL+ in cross-lingual transfer, particularly for supporting low-resource languages. To address this sparsity, we extend URIEL+ by introducing script vectors to represent writing system properties for 7,488 languages, integrating Glottolog to add 18,710 additional languages, and expanding lineage imputation for 26,449 languages by propagating typological and script features across genealogies. These improvements reduce feature sparsity by 14% for script vectors, increase language coverage by up to 19,015 languages (1,007%), and boost imputation quality metrics by up to 35%. Our benchmark on cross-lingual transfer tasks (oriented around low-resource languages) shows occasionally divergent performance compared to URIEL+, with performance gains up to 6% in certain setups.