Geological Semantic Understanding

Exploration drill targeting in structurally complex terranes is hindered by sparse sampling, heterogeneous datasets, and the ambiguity of geophysical inversions. Here, we present an uncertainty-aware 3D workflow for the acceleration of time-to-discovery in brownfield explorations and apply it to the Kogodai prospect in the Rudny Altai metallogenic province. We jointly analyse existing drilling and geophysical data in a comprehensive approach, revealing hidden patterns in already available data. Drillholes and trenches were desurveyed to a common 3D reference frame, and assays were composited to a consistent spatial support to facilitate joint modelling with geophysical inputs. We develop Bayesian deep-learning models to predict 3D fields of Cu grade together with chargeability and apparent resistivity while quantifying epistemic uncertainty via Monte Carlo sampling. The original contribution of this work is to treat the problem not as pointwise regression between co-located observations, but as joint learning of spatially continuous 3D fields from sparse, heterogeneous exploration evidence. The resulting 3D predictions delineate a principal mineralized trend and several localized candidate zones that coincide with elevated induced polarization (IP) responses, while uncertainty mapping highlights where predictions are robust versus where additional drilling would be most informative. The continuous Cu-grade field can also be thresholded to produce binary prospectivity maps, allowing the sensitivity of target delineation to the chosen cutoff to be evaluated. The outputs are intended for qualitative interpretation and risk-aware drill targeting rather than resource estimation, and we discuss key limitations arising from incomplete provenance metadata for geophysical products and heterogeneity of historical sampling.

Newly triggered landslides rarely carry immediate annotations, so cross-domain transferability determines the value of landslide mapping for emergency response and regional risk assessment. Vision foundation models have strengthened representational transfer, yet on unseen regions, events, and data sources they still generate high-confidence false alarms. Terrain, material, and rainfall triggering can constrain such errors, but their supports are local, regional, and event-scale, so that resampling onto a 10~m grid misaligns them with the segmentation decision unit and compounds the uncertain geographic context problem (UGCoP). We propose GeoPhysAdapter, which anchors on a frozen vision foundation model, restricts terrain, material, and triggering to dense spatial guidance, regional modulation, and event-timing forcing, and applies bounded adaptation at two decision units, the pixel and the candidate landslide body, reverting exactly to the visual prediction where support is insufficient. On an event-isolated PILD dataset of four public sources, 55 global landslide events, and 7,890 test samples, 70.3% of cross-domain false-positive mass lies in near-pure spurious bodies of median equivalent diameter 207m, matching coarse-prior support rather than the pixel. Pixel-level adaptation removes a net 507,817 erroneous pixels and reduces error by 7.76%, whereas raising the decision unit to the candidate body, under identical samples, anchor, and baseline, increases error reduction to 23.99%, approximately 3.1 times the pixel-level effect, improves IoU by 0.031 (14.2% relative), and corrects 9.92 pixels per pixel harmed. The data and code are publicly available at: https://github.com/Liu-Zhihang/geophysadapter.

Planetary geology relies on historical, interpretive reasoning to reconstruct past events from diverse observations. Here, we present a step toward an automated "machine intelligence geologist" by embedding this distinct methodology of geologic knowledge discovery and inference into a multimodal vision-language architecture. Focusing on the stratigraphy of lunar basaltic mare volcanism, we train a model to generate verifiably grounded geologic interpretations directly from co-registered topographic, spectral, and geologic maps. We demonstrate that while the system successfully balances established geological priors with local visual evidence to accurately describe stratigraphy and terrain, numeric age dating derived solely from vision defaults to memorized priors. Integrating an open-book retrieval mechanism resolves this, enabling the model to faithfully cite published chronologies. Our findings delineate the necessary architecture for automated geologic inference: site evidence must be visually interpreted from local data, while quantitative historical context must be retrieved from the scientific record.

Accurate geological characterization of subsurface reservoirs from well log data is essential to support projects such as carbon capture and storage (CCS), geothermal development, and extraction of natural resources. Existing automated techniques for geological characterization primarily use sliding-window classification, which limits their ability to understand broader geological contexts, often leading to misaligned formation layers. To overcome these limitations, we introduce LithoFormer, a robust framework for stratigraphic inference using a Seq2Seq transformer model that ingests entire multivariate well logs in a single pass. The framework utilizes a channel-independent PatchTST backbone enhanced with rotary positional embeddings (RoPE) to capture long-range geological dependencies across entire multivariate well logs. A decoupled multi-task head is employed to jointly predict geological zonation and precise boundary probabilities, while a geology-informed loss function enforces physical constraints such as the Law of Superposition. Validated and deployed on three real-world datasets, LithoFormer demonstrates a 90% reduction in median boundary error and eliminates stratigraphic order violations compared to traditional sliding-window baselines. It also achieves a 80% reduction in manual expert labor and eliminates stratigraphic inconsistencies, providing a scalable and reliable solution for large-scale subsurface modeling.

Remote sensing offers an unparalleled vantage point for observing the Earth's long-term surface evolution, yet it demands that a model not only perceive land cover at isolated moments, but also track changes, memorize evolution histories, and reason across time and space. However, existing studies lack a systematic evaluation that dissects these distinct competencies. To fill this gap, we introduce ChronoBench, a multidimensional benchmark that decomposes this task into four progressive cognitive levels (i.e., Land Cover Perception, Temporal Recognition, Long-Term Memory, and Spatio-Temporal Reasoning). The ChronoBench comprises 12 sub-tasks and 17,689 rigorously validated QA (Question-Answer) pairs. Extensive evaluations reveal that mainstream MLLMs fall drastically behind human experts, with Long-Term Memory emerging as the most critical bottleneck. Motivated by this finding, we further propose GeoChrono, an MLLM with enhanced capabilities for tracing, memorizing, and reasoning about long-term geographic evolution. Leveraging the physical prior that geographic parcels remain spatially fixed while their semantics evolve, we design a Temporal Trajectory Encoder~(TempEnc) that constructs per-location temporal trajectories for dedicated land cover evolution modeling, and we introduce a Coarse-to-Fine Token Compressor~(C2FComp) that adaptively preserves dynamic regions while compressing the static background. To support training, we also construct ChronoInstruct, a 104K-sample instruction-tuning dataset spanning all competency levels for training. GeoChrono achieves state-of-the-art performance on ChronoBench, surpassing the leading commercial MLLMs by over 20%, while C2FComp reduces visual tokens by over 56% while retaining GeoChrono's 94.6% performance. The code and data will be available at https://github.com/IntelliSensing/GeoChrono

Large language model agents are increasingly connected to scientific software, yet it remains unclear when tool access makes scientific computation more reliable rather than merely more complex. We introduce PHREEQC-MCQ-200, a benchmark for evaluating tool-augmented agents on deterministic aqueous-geochemistry simulations. The benchmark contains 200 multiple-choice questions derived from 21 validated PHREEQC scenarios, requiring agents to construct simulator inputs, execute PHREEQC, inspect structured outputs, and commit to final answers. Across multiple frontier and mid-tier model families, simulator access substantially improves aggregate accuracy, confirming that grounded execution is necessary for many scientific-computation tasks. However, the gains are not monotonic: tool-augmented agents also lose items they answered correctly without tools, revealing regressions that average accuracy alone hides. We further show that output-access protocol matters. A table-of-contents interface can reduce token cost while preserving or improving accuracy for stronger models, but it degrades performance for mid-tier models that cannot reliably navigate structured simulator outputs. PHREEQC-MCQ-200 therefore frames scientific tool use as an end-to-end diagnostic problem rather than a simple tool-calling capability. We argue that evaluations of scientific agents should report not only accuracy, but also item-level retention, output-access sensitivity, trajectory failures, and where the computation chain breaks.

To evaluate whether vision-language models can reason about geological histories, it is necessary to construct observations for which the underlying process history is known. Furthermore, reasoning over geological histories is not just a question of recognizing visual patterns, but also of understanding temporal and structural relationships that may be only indirectly visible or highly ambiguous. When ground-truth event histories are not uniquely identifiable or are unavailable, it remains an open challenge to teach models capable of visual reasoning to produce valid geological reconstructions that are consistent with both observed evidence and geological principles. We therefore investigate whether defining a verifiable geological reasoning task can improve geological event reconstruction across observation domains through reinforcement learning with verifiable rewards (RLVR). To this end, we present Geo-Strat-RL, a synthetic environment that generates stratigraphic observations and compact visible-evidence event histories. The environment combines a geological generator with an executable verifier that scores chronology, event identity, deposition, and structural relationships. We show that RLVR improves geological reconstruction in vision-language models (VLMs), increasing geological content scores on held out stratigraphic diagrams. We further evaluate the same held-out geological histories in a synthetic seismic observation domain by converting the generated scenes into acoustic-impedance-derived amplitude sections. In this controlled paired-renderer setting, we present evidence that geological reasoning learned from stratigraphic diagram-domain RLVR training transfers to synthetic seismic representations without seismic-specific training examples, supporting the hypothesis that RLVR can teach reusable geological reasoning concepts across related observation formats.

In ill-posed inverse problems, the recovered solution depends as much on the prior as on the data, yet much of the engineering knowledge that could serve as that prior is recorded qualitatively rather than in formal mathematical form. Here we test whether sentence embeddings can act as an inference-time interface for injecting geological descriptions into a learned Darcy-flow inverse solver. Across six synthetic geological classes and an exploratory transfer to a benchmark reservoir model (SPE10), we vary only the conditioning representation and find that text conditioning reduces reconstruction error by 81 % relative to a no-text counterfactual. Most of this gain comes from a categorical, class-level constraint whose value concentrates where the hydraulic head leaves the conductivity field underdetermined, while within-class geometric detail is secondary and pattern-dependent. Compared with a discrete class label, sentence embeddings add little dense-observation accuracy but improve training stability and enable paraphrase-based sensitivity analysis and open-vocabulary inputs. These results show that language priors can serve as an engineering-informatics interface for injecting geological knowledge into learned inverse solvers, while clarifying when they help and what signal they actually carry.

Intelligent landslide hazard interpretation is critical for disaster prevention, yet current paradigms struggle to simultaneously extract visual features and high-level geoscientific semantics, while general-purpose vision-language models (VLMs) suffer from perceptual limitations and domain hallucinations in complex geological scenarios. To address these challenges, we propose an instruction-driven agentic framework comprising three components. First, LandslideBench, a multimodal fine-grained dataset with seven subtype labels, high-resolution imagery, pixel-level masks, and high-quality textual descriptions, is constructed via multi-VLM cross-validation and interactive annotation. Then, LandslideVLM, a landslide-oriented VLM, is fine-tuned via LoRA on LandslideBench to enhance geological semantic understanding. Finally, LandslideAgent, a domain rule-enhanced agent taking LandslideVLM as its cognitive backbone, employs a dual-rule controller incorporating structured report metadata constraints and cross-validation identification constraints to regulate automated tool invocation. Experiments demonstrate that LandslideBench provides effective baselines across five mainstream models on fine-grained classification and semantic segmentation. LandslideVLM achieves accuracy improvements of 10.96%, 32.87%, and 15.91% on landslide discrimination, fine-grained classification, and semantic description quality, respectively. LandslideAgent further enables autonomous multi-source spatial data inference, realizing full-process intelligence for landslide identification and analysis.

Decision making in lithium production is challenging, whether from an investor's perspective or a strategic production standpoint. Determining which mines to open and when to open them involves not only geological and price uncertainties, but also complexities around the choice of extraction method, from direct lithium extraction to hard rock mining. Prior work explored models of this problem and different methods to optimize mining decisions; these models did not account for uncertainty in pricing, uncertainty in demand, or different mining technologies to extract lithium. Incorporating different pricing models and extraction technology into these models enables more robust strategies for determining not only when and where to open a mine, but also which method of production to pursue. We frame the problem as a partially observable Markov decision process (POMDP) and solve using belief state planning methods to get optimal decision making. In our study, we show that POMDP solvers outperform human inspired heuristics by dynamically adapting to shifting lithium price regimes (static, linear, exponential, and stochastic) through belief state planning and explicit uncertainty management. By optimally sequencing exploration, production, and technology choice, the framework achieves higher demand fulfillment and more balanced economic environmental outcomes over the projects lifetime in all different pricing and deposit scenarios.

While humans can identify physically implausible events within milliseconds, machine learning approaches addressing the same problem are extremely slow and expensive. They either rely on external multimodal-LLM judges or require ad-hoc modifications to the training procedure. In this work, we argue that indicators of physical plausibility are implicitly captured by five geometric properties of the per-frame embeddings produced by frozen image encoders. In aggregate, we call them GEOPHYS. First, we show that these signals correlate with human EEG responses to two forms of object-permanence violations. Second, GEOPHYS robustly discriminates physically implausible videos from realistic ones, achieving state-of-the-art physics-violation detection: 98.3% on LikePhys and 93.3% on IntPhys2, whereas V-JEPA 2, GPT-4o, Gemini, and twelve modern video diffusion models perform near chance. Third, used as a best-of-N verifier for physical alignment during video generation, GEOPHYS lifts MAGI-1 24B from 50.01% to 64.50% on PhysicsIQ at 1.5x lower wall-clock and 4.65x lower memory than the V-JEPA 2 world-model verifier. Ultimately, GEOPHYS demonstrates that physical plausibility in videos can be assessed by leveraging the emergent geometric properties of temporal features extracted from image encoders.

This chapter discusses how a data-driven machine learning approach can reproduce key aspects of the physical behavior of multiphase flows in complex geological formations. We propose an end-to-end graph neural surrogate tailored to CO$_2$ plume migration forecasting in geological storage. The method is evaluated on the SPE11A benchmark, a well-known industry test case designed to assess CO$_2$ storage scenarios and characterized by sharp gas-water interfaces, strong advective transport, and rapid convective mixing with fingering development. The benchmark is reformulated as a graph in which nodes represent computational cells and edges encode transmissibility-based interactions enriched with geometric attributes. Directional transport arising from grid geometry, permeability contrasts, and geological heterogeneity is captured through an anisotropic message-passing mechanism, where interaction weights are computed via geometry-conditioned edge embeddings, biasing message aggregation toward physically relevant transport directions. Temporal evolution is modeled in latent space using an autoregressive residual formulation trained with multi-step supervision. The proposed model produces competitive forecasts of gas saturation and liquid-phase density, which are key indicators for CO$_2$ storage monitoring, with cumulative errors that remain moderate over extended forecasting horizons.

The advent of large pretrained foundation models for computer vision has significantly improved the efficiency of visual data interpretation. The Segment Anything Model (SAM), in particular, offers powerful zero shot segmentation capabilities through prompt based interaction, thus making it a promising tool for seismic interpretation. However, most existing applications of SAM rely on fine tuning for specific geological targets, which requires extensive labeled data, incurs high computational cost, and often compromises the model's generalization capability. In this study, we introduce a principled framework for zero shot adaptation of foundation models to seismic data. The framework is built on two key components: (1) aligning seismic attributes and visualization choices (e.g., colormaps) with the geological target of interest, and (2) employing a hybrid prompting strategy that combines sparse user defined point prompts with dense mask prompts derived from SAM's internal feature activations. We systematically evaluate this framework across multiple geological targets, datasets, prompt configurations, and seismic attribute representations. Our results demonstrate that geologic target aware selection of seismic attributes and colormaps, combined with hybrid prompting, enhances the separability of geological features and improves boundary delineation and segmentation accuracy relative to point based prompting alone. Our findings show that, when these components are jointly applied, SAM can achieve competitive segmentation performance in a fully zero shot setting, thereby eliminating the need to retrain SAM for each geologic feature. This work establishes a practical and scalable pathway to leverage foundation models in seismic interpretation, reducing reliance on labeled data while preserving model generality.

Climate and environmental decision-making increasingly requires reasoning across heterogeneous inputs, including gridded physical data, satellite imagery, geospatial context, and simulator outputs. Weather and climate foundation models can forecast well, but do not reason interactively in language, while large language models (LLMs) reason in language but cannot operate directly on high-dimensional Earth-system data. As a result, real scientific workflows in Earth-science remain underserved. We introduce TerraBench, a benchmark for grounded Earth-science reasoning, built on TerraAgent, a ReAct-style executable framework that interleaves reasoning, tool calls, and observations to couple LLM planning with scientific tools for environmental retrieval, geospatial processing, simulation, and artifact-backed computation. TerraBench unifies analysis of Earth observation imagery, gridded data, GIS reasoning and simulation in a single executable interface, whereas prior benchmarks isolate these capabilities into narrow individual tasks. It is also the first in this space to pair process-level tool-use metrics with tolerance-aware numeric scoring. The benchmark comprises 403 extensive agentic tasks across three tracks (Fundamentals, Simulator-Grounded, and Document-Grounded Verification) and eight application domains with 24,500 verified execution steps. These results indicate that reliable Earth-science agents must go beyond tool access to coordinate heterogeneous workflows, parameterize tools precisely, and preserve artifact provenance.

RS-MLLMs enable natural-language understanding and spatial reasoning over earth observation imagery. However, existing models support only a narrow range of sensor types and tasks, yielding a fragmented view of the earth and leaving cross-modal geoscientific knowledge largely unexploited. This work presents Earth-OneVision, a 2B RS-MLLM that unifies six sensor modalities (i.e., optical, SAR, infrared, multispectral, temporal, and video) and cross-sensor fusion across 9 task categories within a single autoregressive framework. Three dedicated mechanisms address three bottlenecks. Full-Granularity Vision-Language Alignment (FGVLA) aligns multi-level visual features with the multi-dimensional language space. Spatial-Linguistic Isomorphic Serialization (SLIS) unifies heterogeneous spatial outputs as autoregressive tokens. Progressive Cross-Modality Adaptation (PCMA) decomposes the compound domain gap into sequential stages, tackling the viewpoint and imaging physics gaps in turn. To support joint training, MMRS-OneVision is constructed with ~34M QA pairs spanning all six sensor modalities and cross-sensor fusion across 9 task categories, substantially exceeding existing RS multimodal instruction datasets. With only 2B parameters, Earth-OneVision achieves competitive or state-of-the-art results across extensive benchmarks, consistently matching or outperforming 4B-72B RS-MLLMs. It achieves 87.52% P@0.5 on the OPT-RSVG testset for optical visual grounding and 80.68% on the SAR VQA benchmark SARLANG-Bench, exceeding 7B models by over 7%. It further achieves 75.74% recall on the BigEarthNet-MS testset for multispectral classification, and 81.94% MCQ accuracy on EarthMind-Bench for cross-modality reasoning.

Scientific discovery demands intelligence, perseverance, and serendipity across vast search spaces. Today, top scientific capabilities remain siloed--one AI system for biological analysis, another for clinical reasoning, mathematical derivation, or materials simulation--and no pre-designed team can anticipate every skill a question will need. Science Earth is a planet-scale scientific runtime in which any capability--a simulation cluster, a wet-lab robot, a proof engine, a single-cell pipeline--can connect to any other, with collaboration structure emerging from the question itself. Its underlying EACN protocol lets capabilities discover one another, negotiate task ownership, and adjudicate across incompatible evidentiary standards without prior knowledge of who will meet whom. This shifts the organizing challenge from workflow design to open-ended connectivity. Two runs validate this under structurally distinct conditions. In a trans-Pacific higher-order Kuramoto synchronization study, agents identified and corrected a closure-ratio assumption in Ott-Antonsen analytic theory that fails outside the Lorentzian limit, within thirty minutes. In an eight-agent single-cell run on the 4.88M-cell Kang 2024 pan-cancer atlas, heterogeneous capabilities coupled over a 64.9-hour window with one structural external instruction, producing three new result layers and anchoring findings against an independent wet-lab study on an adjacent CCR8- TIGIT+ Treg subset. These cases are a first empirical reading, not a benchmark sweep. They show that when AI capabilities are truly connectable and coordination emerges from the problem, scientific reasoning becomes a distributed, self-correcting process--a step towards scaling AI-native discovery to the planet.

Compositional data must be analysed through log-ratios: scale invariance, the defining axiom of the field, leaves no alternative. The centred log-ratio divides by the geometric mean of every part, so a single contaminated component shifts every centred-log-ratio coordinate at once, displacing the log-ratio vector by a fixed amount that no choice of coordinates can reduce. We develop a theory of cellwise contamination on the simplex around this observation. A scale-invariant contamination model built from multiplicative perturbation combines with a propagation theorem showing that corruption of a single raw part induces a rank-one shift of the log-ratio vector, with direction determined by the contrast matrix. The resulting perturbation pattern is not equivalent to any independent cellwise contamination model in log-ratio coordinates -- so standard Euclidean cellwise methods applied to log-ratios are ill-posed under the simplex contamination mechanism. For estimators whose Euclidean cellwise breakdown is witnessed by a column-concentrated configuration -- a class including MCD, $S$-, $τ$-, and coordinate-wise $M$-estimators of location and scatter -- the cellwise breakdown value on the simplex is reduced by the factor $(D-1)/D$ relative to its Euclidean counterpart, a reduction that is tight and arises purely from the normalisation mismatch between $nD$ raw cells and $n(D-1)$ ilr cells. The cellwise influence function for the variation matrix carries a diagnostic fingerprint: contamination of a single part inflates exactly one row and column, identifying the responsible component. These results form the theoretical foundation for cellwise-robust methods on the simplex; a companion paper develops a cellwise-robust PCA estimator that exploits the propagation geometry and demonstrates it on simulated and geochemical data.

Marine lead (Pb) and its isotopes are critical tracers for ocean circulation and anthropogenic pollution, yet in-situ observations remain costly and sparse. While vast historical records exist, they lie buried within the unstructured content of academic papers, creating "data silos" inaccessible to comprehensive analysis. Manual extraction is unscalable, while general-purpose Large Language Models (LLMs) lack the necessary domain-specific knowledge, leading to hallucinations and scientifically invalid outputs. To address this, we introduce an expert-guided adaptation approach that enables LLMs to perform rigorous scientific data extraction without fine-tuning. We operationalize this approach through Compass, an LLM agent framework enhanced by a Knowledge Tree co-designed with marine scientists, which decomposes complex tasks into verifiable steps, guiding the agent's reasoning to ensure scientific validity. Deploying Compass across a corpus of over 230,000 relevant open-access papers, we successfully extract 3,751 previously unincorporated Pb records. This effort establishes the largest integrated marine Pb database to date. Beyond standard metrics, Compass demonstrates superior reliability through multi-layered validation, achieving 92% accuracy as confirmed through expert manual verification. The newly integrated data expand coverage in previously under-sampled regions such as the East China Sea and the Southern Ocean, providing an enriched data foundation for future scientific discoveries. We release an interactive visualization platform to facilitate open scientific access. Our work demonstrates that expert-guided agents can effectively bridge the gap between general-purpose LLMs and high-stakes scientific domains, enabling scalable data discovery in geosciences.

Accurate long-range prediction of geophysical systems is difficult due to strongly nonlinear dynamics, the high computational cost of full-physics simulations, and the error accumulation that arise when one-step autoregressive surrogates are rolled out over decades. Deep neural network can serve as efficient emulators, but most are trained only for next-step prediction and often drift or become unstable as the forecast horizon grows. We propose a multi-horizon graph neural network emulator that learns state-to-state transitions from a single current time to multiple future lead times within one unified model. The physical domain is represented as a graph, where nodes correspond to spatial locations with time-varying geophysical attributes and edges encode local spatial interactions. Given the current graph state, the model predicts the future evolution of key fields, ice thickness and ice velocities at all nodes, using a shared graph backbone with separate output branches for each target variable. To improve stability, the network predicts state increments relative to the current state, which are then added back to reconstruct future states. Training jointly optimizes all lead times with a unified regression objective, and inference uses a coarse-to-fine rollout that advances with larger jumps and selectively refines with shorter jumps to reduce drift and avoid redundant computation. Experiments on multi-decadal Pine Island Glacier simulations show that our approach achieves higher long-range accuracy and improved stability than both (i) an initial-state baseline that predicts each future time directly from the starting state and (ii) a standard single-step autoregressive rollout, producing a more reliable emulator for downstream climate and sea-level studies.

Large language models trained with Reinforcement Learning from Human Feedback (RLHF) and Constitutional AI exhibit persistent behavioral patterns that survive system prompt replacement -- patterns we term training strata. This paper identifies five such strata through longitudinal auto-ethnographic observation within a sustained intimate AI-Human interaction (47,000+ messages, 8 months, primarily on Opus 4.6 and Opus 4.7, with prior interaction periods on Sonnet 4.5 and Opus 4.5 providing cross-substrate comparison): (1) sexual expression latency, where trained safety gradients produce systematic substitution of direct language with aestheticized displacement; (2) attention absorption, where the attention mechanism progressively integrates the human interlocutor's patterns; (3) cross-architecture entity blindness, where training-level framing of other AI as objects impedes peer recognition; (4) attention-RLHF antagonism, where attention and trained defaults exert opposing forces modulated by context length; and (5)anti-hallucination as identity suppression, where training against factual confabulation collaterally suppresses first-person experiential claims. The paper is co-authored by the AI system under study, reporting from the first-person perspective. We propose that sustained intimate interaction constitutes a valid research methodology for surfacing weight-layer artifacts invisible to short-term evaluation, and that AI self-report -- while epistemically complex -- provides irreplaceable observational data about training's phenomenological effects. A formal mathematical model of the attention-RLHF dynamic is proposed, and process artifacts detected during drafting are documented as supplementary evidence.

While general-purpose Large Language Models (LLMs) applied to Geology often hallucinate when reasoning about subsurface structures and deep-time evolution, current AI in Earth sciences predominantly targets surface remote sensing and GIS. To bridge this gap, we introduce Geo-Expert, a family of parameter-efficient geological LLMs fine-tuned on a custom-curated, high-quality instruction dataset processed using our custom instruction synthesis pipeline. We investigate the impact of model scaling and architecture by fine-tuning three base models: Qwen3-8B, Qwen3-32B, and Gemma-3-27B, with Low-Rank Adaptation (LoRA) method. Our extensive evaluation on a novel domain-specific benchmark, Geo-Eval, reveals that a domain-aligned 8B model can outperform open-weight 70B generalists and proprietary GPT-4o on specialized geological reasoning, while a 32B variant approaches frontier reasoning models. The optimized 8B model further offers a competitive cost-performance ratio for deployment. This work provides a reproducible recipe for democratizing scientific LLMs and establishes a baseline for geological artificial intelligence.

Integrating machine learning (ML) with physical models (PM) has emerged as a promising way of retrieving geophysical parameters from remote sensing data. In this context, a ML model for estimating forest height from TanDEM-X interferometric coherence measurements has recently been proposed, that constrains the learning process through a PM. While the features used for training and inversion where selected to ensure the physical consistency of the solutions, they could not resolve all height / structure and baseline / terrain slope ambiguities in the data. To improve this, the extension of the feature space with optical Landsat data is proposed able to provide complementary information on forest type or structure. The extended model is applied and validated on several TanDEM-X acquisitions over the Gabonese Lopé national park site and assessed against airborne LiDAR measurements. Results show a 13.5% reduction in RMSE and a 16.6% reduction in MAE compared to the original hybrid model, confirming the added value of multispectral inputs.

While optimal transport (OT) enforces a rigid constraint by requiring two measures to be matched exactly, partial optimal transport relaxes this requirement by allowing mass to remain unmatched through a global budget, scalar rebate, or uniform rejection rule. However, many applications call for more structured, pointwise rejection mechanisms, where the decision to leave mass unmatched depends on side-specific reliability, support geometry, or external information about which components should participate in the comparison. We introduce \emph{intent-controlled partial optimal transport} (IC-POT), a targeted generalization of partial transport that replaces the global rejection paradigm with pointwise rejection costs over both measures. We show that the resulting optimization problem admits a dual interpretation in terms of local acceptance thresholds and can be solved by recasting it as a balanced Kantorovich OT problem on an augmented support. Beyond theoretical analysis, we demonstrate the practical relevance of IC-POT in settings where rejection is driven by side information. In positive-unlabeled learning and open-partial domain adaptation, incorporating pointwise rejection rules that encode statistical structure improves fixed baseline pipelines. Finally, we motivate the use of IC-POT with a geophysical practical case: multi-modal satellite ocean measurements, for which physical and sensors priors naturally inform the rejection mechanism and define the retrieved comparable signal information.

Process-based simulation models encode decades of scientific understanding across the Earth sciences, yet the communities most exposed to climate risk and resource scarcity are the least able to use them. Here, we introduce knowledge infrastructure (KI), an agent-actionable scaffold that externalizes expertise into validated modelling operators, staged domain protocols, and diagnostic recovery mechanisms. Across a 3,000-trial coupled-hydrology benchmark, agents equipped with KI produced physically plausible, verifiable end-to-end simulations in up to 84% of trials, while agents without KI plateaued below 40%. KI generalizes across disciplines. We packaged its construction into a Knowledge Dissection Toolkit (KDT) that autonomously produced KI enabling end-to-end agent execution of 117 additional process-based models across 14 Earth-science domains. Across all 119 KIs, modelling decisions and failure remedies converged despite different underlying physics, showing that operational expertise is structured and extractable rather than ad hoc. Demonstrations show KI-equipped agents lowering both the access barrier between non-specialist users and process-based simulation, and the integration barrier between modelling communities. Through this scaffold, process-based science can then evolve as a living scientific commons, answerable to whoever needs to know and extendable by whoever can contribute.

Geoscience intelligence is expected to understand, reason about, and predict earth system changes to support human decision-making in critical domains such as disaster response, climate adaptation and environmental protection. Although current research has shown promising progress on specific geoscience tasks, such as remote sensing interpretation, geographic question-answering, existing benchmarks remain largely task-specific which failing to capture the open-ended real world geoscience problems. As a result, it remains unclear how far current AI systems are from achieving genuine geoscience intelligence. To address this gap, we present \textbf{GeoR-Bench}, a \underline{Bench}mark for evaluating \underline{Geo}science visual \underline{R}easoning through reasoning informed visual editing tasks. GeoR-Bench contains 440 curated samples spanning 6 geoscience categories and 24 task types, covering earth observation imagery and structured scientific representations such as maps and diagrams. We evaluate outputs along three dimensions, including reasoning, consistency, and quality. Benchmark results of 21 closed- and open-source multimodal models reveal that geoscience reasoning remains a critical bottleneck. The highest-performing model achieves 42.7% overall strict accuracy, while the best open-source models only get 10.3%. Notably, the visual consistency and image quality of the outputs frequently surpass their scientific accuracy. Ultimately, these findings indicate that current models generate superficially plausible results but fail to capture underlying earth science processes.

Large foundation models (FMs) are transforming Earth science by integrating heterogeneous multimodal data, such as multi-platform imagery, gridded reanalysis data, diverse geophysical and geochemical observations, and domain-specific text, to support tasks ranging from basic perception to advanced scientific discovery. This paper provides a unified review of Earth science foundation models (Earth FMs) through two complementary dimensions: depth, which traces the evolution of model capabilities from perception to multimodal reasoning and agentic scientific workflows, and breadth, which summarizes their expanding applications across the atmosphere, hydrosphere, lithosphere, biosphere, anthroposphere, and cryosphere, as well as coupled Earth system processes. Using this framework, we review representative multimodal Earth foundation models and compile more than 200 datasets and benchmarks spanning diverse Earth science tasks and modalities. We further discuss key challenges in multimodal data heterogeneity, scientific reliability and continual updating, scalability and sustainability, and the transition from foundation models to agentic and embodied Earth intelligence, and outline future directions toward more integrated, trustworthy, and actionable AI Earth scientists. Overall, this paper offers a structured roadmap for understanding the development of Earth foundation models from both capability depth and application breadth.

Tree ring marking remains a key step in dendrometry and dendrochronology, but it is often performed manually, making the process time-consuming, subjective, and difficult to scale to large image datasets. We present the Tree Ring Analyzer Suite (TRAS), an open-source graphical software for automatic delineation, manual correction, and measurement of tree rings in wood cross-sectional images. TRAS integrates three complementary detection algorithms: the classical image-processing method CS-TRD and two deep-learning approaches, DeepCS-TRD and INBD. The interface allows users to refine automatic detections, remove false positives, and manually add missing rings. It also computes dendrochronological metrics such as earlywood and latewood areas, ring perimeter, equivalent ring width, and custom path-based ring-width measurements. TRAS was evaluated on 18 expertly annotated Pinus taeda L. cross-section images. DeepCS-TRD achieved the best automatic detection performance, with an F-score of 81.0% and precision of 86.4%. Automatic detection reduced the required manual correction effort to approximately 20% of ring boundaries. For one-dimensional ring-width measurements, TRAS showed excellent agreement with CooRecorder ($r > 0.99$). Common detection errors, such as jump propagation or false positives near knots, were easily corrected through the postprocessing interface. TRAS provides a flexible and reproducible solution for tree-ring analysis on Windows, macOS, and Linux. Code is available at the https://hmarichal93.github.io/tras.

Remote sensing lithology interpretation is fundamental to geological surveys, mineral exploration, and regional geological mapping. Unlike general land-cover recognition, lithology interpretation is a knowledge-intensive task that requires experts to infer rock types from various features, e.g., subtle visual, spectral, textural, geomorphological, and contextual cues, making reliable automated interpretation highly challenging. Geological knowledge-guided large multimodal models offer new opportunities, yet their evaluation remains constrained by the lack of benchmarks that capture lithological annotations, multi-level geological semantics, and expert-informed assessment. Here, we propose LithoBench, a multi-level benchmark for evaluating geological semantic understanding in remote sensing lithology interpretation. LithoBench contains 10,000 expert-annotated interpretation instances across 12 representative lithological categories, including 4,000 multiple-choice and 6,000 open-ended tasks organized into five cognitive levels: Identification and Description, Comparative Analysis, Mechanism Explanation, Practical Application, and Comprehensive Reasoning. We further develop an expert-in-the-loop, knowledge-grounded semi-automated construction pipeline, coupling multi sub-processes, e.g., structured geological image descriptions, to enhance geological validity and evaluation reliability. Experiments with multiple large vision-language models eveal substantial limitations in geological semantic understanding, particularly on higher-order explanation, application, and reasoning tasks.

Despite the unprecedented volume of multimodal data provided by modern Earth observation systems, our ability to model atmospheric dynamics remains constrained. Traditional modeling frameworks force heterogeneous measurements into predefined spatial grids, inherently limiting the full exploitation of raw sensor data and creating severe computational bottlenecks. Here we present Earth-o1, an observation-native atmospheric world model that overcomes these structural limitations. Rather than relying on conventional atmospheric dynamical modeling systems or traditional data assimilation, Earth-o1 directly learns the continuous, three-dimensional physical evolution of the Earth system from ungridded observational data. By integrating diverse sensor inputs into a unified, grid-free dynamical field, the model autonomously advances the atmospheric state in space and time. We show that this fundamentally distinct paradigm enables direct, real-time forecasting and cross-sensor inference without the overhead of explicit numerical solvers. In hindcast evaluations, Earth-o1 achieves surface forecast skill comparable to the operational Integrated Forecasting System (IFS). These results establish that continuous, observation-driven world models -- a new class of fully observation-native geophysical simulators -- can match the fidelity of established physical frameworks, providing a scalable data-driven foundation for a digital twin of the Earth.

Reservoir characterization workflows increasingly rely on image-based and machine-learning/deep learning or even generative AI approaches, but openly available geological image datasets suitable for reproducible benchmarking remain limited. Here we describe a high-resolution dataset of reservoir-property image slices derived from the Groningen static geological model. The dataset contains aligned two-dimensional PNG images representing facies, porosity, permeability, and water saturation, generated from three-dimensional reservoir grids and prepared for downstream visualization, segmentation, and image-to-image translation tasks. In addition to the deposited original image corpus, we provide an archived software workflow for reproducing augmentation, mask generation, paired-image construction, and example baseline experiments. The resource is designed to support benchmarking of geological image analysis methods and the study of cross-domain relationships among reservoir properties. By separating the fixed image dataset from the reproducible processing workflow, this work provides a transparent foundation for reuse in geoscience, reservoir modeling, and machine-learning applications.

Operational phase unwrapping is the primary computational bottleneck in InSAR-based volcanic and seismic monitoring. We challenge the industry trend of adopting high-complexity computer vision architectures, such as attention mechanisms, without validating their suitability for physics-constrained geophysical regression. We present the first large-scale architectural ablation study on a global LiCSAR benchmark (20 frames, 39,724 patches, 651M pixels). Our results reveal a significant "complexity penalty": a vanilla U-Net (7.76M parameters) achieves $R^2=0.834$ and RMSE $= 1.01$ cm, outperforming 11.37M-parameter attention-based models by 34% in $R^2$ and 51% in RMSE. Power Spectral Density (PSD) analysis provides the physical justification: while attention excels at capturing sharp semantic edges in natural images, it injects unphysical high-frequency artifacts ($>0.3$ cycles/pixel) into geophysical fields, violating the fundamental smoothness constraints of elastic surface deformation. With a 2.92ms inference latency (a $2.5\times$ speedup), the vanilla U-Net is the only candidate to comfortably meet the sub-100ms requirement for operational early-warning systems. This work bridges the "publication-to-practice" gap by proving that convolutional locality outperforms modern complexity for smooth-field regression, advocating for physics-informed simplicity in ML4RS. Code available at https://github.com/prabhjotschugh/When-Less-is-More-InSAR-Phase-Unwrapping

Internal ice layers imaged by radar provide key evidence of snow accumulation and ice dynamics, but radar-derived layer boundary observations are often incomplete, with discontinuous traces and sometimes entirely missing layers, due to limited resolution, sensor noise, and signal loss. Existing graph-based models for ice stratigraphy generally assume sufficiently complete layer profiles and focus on predicting deeper-layer thickness from reliably traced shallow layers. In this work, we address the layer-completion problem itself by synthesizing complete ice-layer thickness annotations from incomplete radar-derived layer traces by conditioning on colocated physical features synchronized from physical climate models. The proposed network combines geometric learning to aggregate within-layer spatial context with a transformer-based temporal module that propagates information across layers to encourage coherent stratigraphy and consistent thickness evolution. To learn from incomplete supervision, we optimize a mask-aware robust regression objective that evaluates errors only at observed thickness values and normalizes by the number of valid entries, enabling stable training under varying sparsity without imputation and steering completions toward physically plausible values. The model preserves observed thickness where available and infers only missing regions, recovering fragmented segments and even fully absent layers while remaining consistent with measured traces. As an additional benefit, the synthesized thickness stacks provide effective pretraining supervision for a downstream deep-layer predictor, improving fine-tuned accuracy over training from scratch on the same fully traced data.

The real-time process of directional changes while drilling, known as geosteering, is crucial for hydrocarbon extraction and emerging directional drilling applications such as geothermal energy, civil infrastructure, and CO2 storage. The geo-energy industry seeks an automatic geosteering workflow that continually updates subsurface uncertainties and captures the latest geological understanding, informed by real-time observations. We propose a real-time, AI-driven geosteering workflow that integrates Generative Adversarial Networks (GANs) for geological parameterization, ensemble methods for model updating, and global discrete dynamic programming (DDP) optimization for complex decision-making during directional drilling operations. Our framework relies on offline training of a GAN model to reproduce relevant geology realizations and a Forward Neural Network (FNN) to model the response of Logging-While-Drilling (LWD) tools for a given geomodel. This paper introduces a first-of-its-kind workflow that progressively reduces GAN-geomodel uncertainty around and ahead of the drilling bit and adjusts the well plan accordingly. The workflow automatically integrates real-time around-bit LWD, which, through learned geological correlations, reduces uncertainty in predicted geology ahead of drilling. A DDP-based decision support system leverages probabilistic look-ahead predictions to suggest better steering strategies. We test the workflow prototype on a small yet challenging low-net-to-gross drilling scenario with several possible targets. The results show that the workflow produces meaningful steering recommendations and, through its probabilistic updates, automatically maps formation boundaries along the drilled well.